Wall clock time and date at job start Sun Mar 29 2020 21:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47148 * 2 1 4 4 N 1.46494 * 109.47251 * 180.02562 * 3 2 1 5 5 C 1.35317 * 125.87155 * 125.32590 * 4 3 2 6 6 C 1.35352 * 106.17693 * 180.11507 * 5 4 3 7 7 C 1.50700 * 126.75361 * 179.84844 * 6 5 4 8 8 N 1.46498 * 109.46769 * 94.71485 * 7 6 5 9 9 C 1.36943 * 119.99752 * 179.72432 * 8 7 6 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47159 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47290 * 120.00044 * 13 11 9 16 16 H 1.48503 * 109.47163 * 240.00049 * 13 11 9 17 17 N 1.33772 * 106.49634 * 359.59642 * 6 5 4 18 18 N 1.28636 * 108.88627 * 0.25926 * 17 6 5 19 19 H 1.08996 * 109.47163 * 299.99796 * 1 2 3 20 20 H 1.09000 * 109.46953 * 60.00009 * 1 2 3 21 21 H 1.08999 * 109.47225 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.47270 * 240.00237 * 2 1 3 23 23 H 1.08997 * 109.47293 * 120.00386 * 2 1 3 24 24 H 1.08998 * 109.47402 * 60.00253 * 3 2 1 25 25 H 1.09000 * 109.47186 * 299.99848 * 3 2 1 26 26 H 1.08002 * 126.91295 * 359.96910 * 5 4 3 27 27 H 1.09004 * 109.47210 * 334.71843 * 7 6 5 28 28 H 1.08994 * 109.47121 * 214.71813 * 7 6 5 29 29 H 0.97001 * 120.00384 * 0.02562 * 8 7 6 30 30 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.2975 2.0767 -0.8955 6 6 5.5720 1.8108 -0.5254 7 6 6.8276 2.2890 -1.2079 8 7 7.3009 3.5132 -0.5572 9 6 8.4379 4.1311 -1.0054 10 1 8.9831 3.7184 -1.8413 11 6 8.8897 5.2879 -0.3852 12 7 8.2254 5.7906 0.6339 13 14 10.4401 6.1312 -0.9969 14 1 10.9955 5.3726 -2.1464 15 1 10.1141 7.5143 -1.4283 16 1 11.4431 6.1773 0.0972 17 7 5.4978 1.0445 0.5686 18 7 4.2595 0.8444 0.8537 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.6767 1.9563 0.8900 25 1 1.6767 1.9563 -0.8900 26 1 3.9774 2.6729 -1.7372 27 1 6.6152 2.4941 -2.2572 28 1 7.5958 1.5191 -1.1364 29 1 6.8115 3.8838 0.1938 30 1 8.5409 6.5991 1.0671 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603164203.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:10 Heat of formation + Delta-G solvation = 101.626385 kcal Electronic energy + Delta-G solvation = -13237.845964 eV Core-core repulsion = 10877.711024 eV Total energy + Delta-G solvation = -2360.134940 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.86791 -36.17489 -34.67997 -32.51377 -31.72055 -29.82713 -27.17903 -25.71070 -22.92997 -22.55661 -21.40644 -20.26374 -17.39880 -16.85800 -16.25895 -15.22403 -14.64331 -14.53281 -13.75482 -13.72844 -13.15751 -12.81613 -12.58179 -12.42745 -11.86914 -11.74193 -11.26449 -11.10629 -10.83969 -10.79581 -10.36661 -10.02938 -9.81261 -9.64961 -8.85399 -8.77059 -6.88009 -5.70888 -3.00378 1.92400 2.54644 2.98324 3.47748 3.53143 3.55710 4.28545 4.47759 4.65446 4.75814 4.79845 5.00428 5.08519 5.28215 5.36350 5.53081 5.61716 5.66836 5.68851 5.84280 5.98583 6.21968 6.47407 6.71635 6.81674 6.88606 7.74641 8.46509 8.92280 9.58239 10.14552 10.50576 11.52086 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.083873 B = 0.005401 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 333.758389 B = 5182.588204 C = 5247.900334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C 0.117 3.883 4 N -0.299 5.299 5 C -0.045 4.045 6 C -0.007 4.007 7 C 0.233 3.767 8 N -0.726 5.726 9 C -0.239 4.239 10 H 0.074 0.926 11 C -0.014 4.014 12 N -0.932 5.932 13 Si 0.909 3.091 14 H -0.279 1.279 15 H -0.292 1.292 16 H -0.291 1.291 17 N -0.257 5.257 18 N -0.097 5.097 19 H 0.060 0.940 20 H 0.058 0.942 21 H 0.063 0.937 22 H 0.070 0.930 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.102 0.898 26 H 0.188 0.812 27 H 0.037 0.963 28 H 0.039 0.961 29 H 0.385 0.615 30 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.973 -9.005 -4.173 18.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C -0.004 4.004 4 N -0.094 5.094 5 C -0.196 4.196 6 C -0.146 4.146 7 C 0.104 3.896 8 N -0.371 5.371 9 C -0.370 4.370 10 H 0.092 0.908 11 C -0.210 4.210 12 N -0.581 5.581 13 Si 0.740 3.260 14 H -0.205 1.205 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.124 5.124 18 N -0.076 5.076 19 H 0.079 0.921 20 H 0.077 0.923 21 H 0.082 0.918 22 H 0.089 0.911 23 H 0.100 0.900 24 H 0.114 0.886 25 H 0.121 0.879 26 H 0.205 0.795 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.219 0.781 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.808 -9.858 -3.012 18.871 hybrid contribution 0.442 1.433 -0.949 1.774 sum -15.366 -8.425 -3.961 17.966 Atomic orbital electron populations 1.21700 0.94100 1.02617 1.02277 1.21814 0.96706 0.94837 1.04183 1.22107 0.73470 0.99794 1.05033 1.47330 1.08670 1.34044 1.19318 1.23425 0.91081 1.04910 1.00193 1.22473 0.95976 1.00237 0.95875 1.18938 0.87526 0.89781 0.93370 1.42333 1.30145 1.25630 1.39012 1.19295 1.00946 1.04863 1.11879 0.90816 1.24761 0.99334 0.98577 0.98307 1.69700 1.40676 1.23353 1.24375 0.86083 0.82863 0.79213 0.77823 1.20455 1.21934 1.21857 1.75089 1.08787 1.15274 1.13228 1.78203 0.96671 1.17959 1.14769 0.92121 0.92313 0.91815 0.91135 0.90012 0.88592 0.87931 0.79516 0.94504 0.94367 0.78114 0.93586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.48 16 2 C -0.14 -1.11 6.06 -26.73 -0.16 -1.28 16 3 C 0.12 1.08 6.46 -4.05 -0.03 1.05 16 4 N -0.30 -4.40 3.44 -61.27 -0.21 -4.62 16 5 C -0.05 -0.72 11.50 -17.04 -0.20 -0.91 16 6 C -0.01 -0.15 6.61 -82.78 -0.55 -0.70 16 7 C 0.23 5.06 6.82 -5.19 -0.04 5.02 16 8 N -0.73 -19.51 5.59 -61.09 -0.34 -19.86 16 9 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 10 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 11 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 12 N -0.93 -29.17 13.06 55.49 0.72 -28.45 16 13 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 17 N -0.26 -5.46 12.41 33.29 0.41 -5.05 16 18 N -0.10 -1.79 12.91 60.35 0.78 -1.01 16 19 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 20 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 21 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 22 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 24 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.10 0.66 8.07 -51.93 -0.42 0.24 16 26 H 0.19 2.27 8.06 -52.49 -0.42 1.85 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.39 11.16 7.66 -40.82 -0.31 10.85 16 30 H 0.25 7.63 8.31 -40.82 -0.34 7.30 16 LS Contribution 266.18 15.07 4.01 4.01 Total: -1.00 -34.45 266.18 -4.57 -39.02 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -4.08 Total: 3.00 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -0.85 Total: -4.81 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 1.36 Total: -58.98 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -34.45 -4.57 -39.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603164203.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.646 kcal (2) G-P(sol) polarization free energy of solvation -34.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds