Wall clock time and date at job start Sun Mar 29 2020 21:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47148 * 2 1 4 4 N 1.46494 * 109.47251 * 180.02562 * 3 2 1 5 5 C 1.35317 * 125.87155 * 125.32590 * 4 3 2 6 6 C 1.35352 * 106.17693 * 180.11507 * 5 4 3 7 7 C 1.50700 * 126.75361 * 179.84844 * 6 5 4 8 8 N 1.46498 * 109.46769 * 94.71485 * 7 6 5 9 9 C 1.36943 * 119.99752 * 179.72432 * 8 7 6 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47159 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47290 * 120.00044 * 13 11 9 16 16 H 1.48503 * 109.47163 * 240.00049 * 13 11 9 17 17 N 1.33772 * 106.49634 * 359.59642 * 6 5 4 18 18 N 1.28636 * 108.88627 * 0.25926 * 17 6 5 19 19 H 1.08996 * 109.47163 * 299.99796 * 1 2 3 20 20 H 1.09000 * 109.46953 * 60.00009 * 1 2 3 21 21 H 1.08999 * 109.47225 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.47270 * 240.00237 * 2 1 3 23 23 H 1.08997 * 109.47293 * 120.00386 * 2 1 3 24 24 H 1.08998 * 109.47402 * 60.00253 * 3 2 1 25 25 H 1.09000 * 109.47186 * 299.99848 * 3 2 1 26 26 H 1.08002 * 126.91295 * 359.96910 * 5 4 3 27 27 H 1.09004 * 109.47210 * 334.71843 * 7 6 5 28 28 H 1.08994 * 109.47121 * 214.71813 * 7 6 5 29 29 H 0.97001 * 120.00384 * 0.02562 * 8 7 6 30 30 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.2975 2.0767 -0.8955 6 6 5.5720 1.8108 -0.5254 7 6 6.8276 2.2890 -1.2079 8 7 7.3009 3.5132 -0.5572 9 6 8.4379 4.1311 -1.0054 10 1 8.9831 3.7184 -1.8413 11 6 8.8897 5.2879 -0.3852 12 7 8.2254 5.7906 0.6339 13 14 10.4401 6.1312 -0.9969 14 1 10.9955 5.3726 -2.1464 15 1 10.1141 7.5143 -1.4283 16 1 11.4431 6.1773 0.0972 17 7 5.4978 1.0445 0.5686 18 7 4.2595 0.8444 0.8537 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.6767 1.9563 0.8900 25 1 1.6767 1.9563 -0.8900 26 1 3.9774 2.6729 -1.7372 27 1 6.6152 2.4941 -2.2572 28 1 7.5958 1.5191 -1.1364 29 1 6.8115 3.8838 0.1938 30 1 8.5409 6.5991 1.0671 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603164203.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:10 Heat of formation + Delta-G solvation = 76.556513 kcal Electronic energy + Delta-G solvation = -13238.933075 eV Core-core repulsion = 10877.711024 eV Total energy + Delta-G solvation = -2361.222051 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.19368 -37.27135 -36.41226 -33.86892 -33.25967 -31.57438 -28.10779 -27.46799 -24.79237 -23.54667 -22.67790 -21.49514 -19.32844 -18.18500 -17.41356 -16.58790 -16.08369 -15.82938 -15.53214 -15.10735 -14.46511 -14.22504 -13.79764 -13.39284 -13.09960 -12.86824 -12.77123 -12.56038 -12.31977 -12.03023 -11.92245 -11.82560 -11.66108 -10.97755 -10.94260 -10.18921 -9.02044 -7.93216 -5.23933 0.66250 1.45616 1.51408 1.52464 1.54267 1.62982 2.60189 3.38013 3.42587 3.63198 3.83558 4.01530 4.19276 4.22268 4.26682 4.35364 4.47632 4.63727 4.80071 4.89364 5.10032 5.11760 5.16824 5.25343 5.36840 5.51506 5.74479 6.26702 7.33262 7.54516 8.04410 8.30663 9.31188 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.083873 B = 0.005401 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 333.758389 B = 5182.588204 C = 5247.900334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C 0.104 3.896 4 N -0.284 5.284 5 C -0.021 4.021 6 C -0.042 4.042 7 C 0.236 3.764 8 N -0.740 5.740 9 C -0.244 4.244 10 H 0.085 0.915 11 C -0.078 4.078 12 N -0.974 5.974 13 Si 0.980 3.020 14 H -0.261 1.261 15 H -0.291 1.291 16 H -0.297 1.297 17 N -0.304 5.304 18 N -0.115 5.115 19 H 0.065 0.935 20 H 0.074 0.926 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.060 0.940 24 H 0.108 0.892 25 H 0.141 0.859 26 H 0.229 0.771 27 H 0.064 0.936 28 H 0.027 0.973 29 H 0.370 0.630 30 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.301 -8.830 -5.844 20.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C -0.015 4.015 4 N -0.078 5.078 5 C -0.173 4.173 6 C -0.181 4.181 7 C 0.108 3.892 8 N -0.383 5.383 9 C -0.376 4.376 10 H 0.103 0.897 11 C -0.270 4.270 12 N -0.625 5.625 13 Si 0.809 3.191 14 H -0.185 1.185 15 H -0.218 1.218 16 H -0.224 1.224 17 N -0.171 5.171 18 N -0.094 5.094 19 H 0.084 0.916 20 H 0.093 0.907 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.126 0.874 25 H 0.159 0.841 26 H 0.246 0.754 27 H 0.082 0.918 28 H 0.045 0.955 29 H 0.201 0.799 30 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -17.166 -9.740 -4.703 20.289 hybrid contribution 0.714 1.297 -0.450 1.547 sum -16.452 -8.443 -5.153 19.196 Atomic orbital electron populations 1.21671 0.91843 1.03229 1.03332 1.21768 0.98478 0.93843 1.02932 1.22712 0.70165 1.01077 1.07542 1.47783 1.10441 1.31940 1.17680 1.23906 0.89708 1.03371 1.00356 1.22339 0.96900 1.02126 0.96747 1.18965 0.88317 0.87497 0.94399 1.42547 1.29789 1.27089 1.38861 1.19769 1.01365 1.04743 1.11683 0.89674 1.25659 1.02814 0.99675 0.98817 1.69872 1.42668 1.23883 1.26097 0.84972 0.78661 0.77991 0.77497 1.18489 1.21760 1.22416 1.75014 1.10512 1.16940 1.14596 1.78096 0.96276 1.19070 1.15936 0.91579 0.90720 0.91500 0.91605 0.92144 0.87430 0.84094 0.75409 0.91813 0.95469 0.79881 0.94059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.91 71.98 0.71 -0.50 16 2 C -0.13 -1.87 6.06 30.59 0.19 -1.69 16 3 C 0.10 1.60 6.46 86.38 0.56 2.15 16 4 N -0.28 -7.82 3.44 -347.75 -1.20 -9.02 16 5 C -0.02 -0.62 11.50 83.49 0.96 0.34 16 6 C -0.04 -1.66 6.61 41.60 0.28 -1.38 16 7 C 0.24 10.17 6.82 85.63 0.58 10.75 16 8 N -0.74 -39.96 5.59 -347.18 -1.94 -41.90 16 9 C -0.24 -13.98 9.99 84.03 0.84 -13.14 16 10 H 0.09 4.57 7.83 -2.91 -0.02 4.54 16 11 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 12 N -0.97 -61.85 13.06 21.65 0.28 -61.57 16 13 Si 0.98 46.81 29.55 68.60 2.03 48.84 16 14 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 15 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 16 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 17 N -0.30 -13.14 12.41 -48.60 -0.60 -13.74 16 18 N -0.11 -4.21 12.91 37.02 0.48 -3.73 16 19 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 20 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 21 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 22 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 23 H 0.06 1.12 8.12 -2.39 -0.02 1.10 16 24 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.14 1.14 8.07 -2.39 -0.02 1.12 16 26 H 0.23 4.54 8.06 -2.91 -0.02 4.52 16 27 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 28 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.37 21.87 7.66 -92.71 -0.71 21.16 16 30 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -75.71 266.18 4.05 -71.66 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.42 Total: 17.05 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 4.58 Total: -7.59 kcal Atomic # 7 Polarization: -126.98 SS G_CDS: -2.98 Total: -129.96 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -75.71 4.05 -71.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603164203.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.214 kcal (2) G-P(sol) polarization free energy of solvation -75.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds