Wall clock time and date at job start Sun Mar 29 2020 21:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47425 * 2 1 4 4 C 1.36933 * 120.00369 * 84.69868 * 3 2 1 5 5 H 1.08002 * 120.00133 * 321.50869 * 4 3 2 6 6 C 1.38817 * 119.99897 * 141.50890 * 4 3 2 7 7 N 1.31614 * 120.00275 * 338.83309 * 6 4 3 8 8 Si 1.86803 * 119.99691 * 158.83658 * 6 4 3 9 9 H 1.48496 * 109.47604 * 90.00045 * 8 6 4 10 10 H 1.48506 * 109.46884 * 210.00083 * 8 6 4 11 11 H 1.48505 * 109.47166 * 329.99378 * 8 6 4 12 12 C 1.46504 * 119.99923 * 264.69847 * 3 2 1 13 13 C 1.50706 * 109.46954 * 89.99695 * 12 3 2 14 14 C 1.41382 * 126.79740 * 94.71658 * 13 12 3 15 15 C 1.35456 * 103.98086 * 179.88887 * 14 13 12 16 16 C 1.50703 * 126.77212 * 180.09595 * 15 14 13 17 17 O 1.34040 * 106.44610 * 0.36457 * 15 14 13 18 18 N 1.20914 * 111.56762 * 359.75418 * 17 15 14 19 19 H 1.09004 * 109.46751 * 300.00134 * 1 2 3 20 20 H 1.08995 * 109.46942 * 59.99886 * 1 2 3 21 21 H 1.08994 * 109.47683 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46751 * 239.99866 * 2 1 3 23 23 H 1.08995 * 109.46942 * 120.00114 * 2 1 3 24 24 H 0.97001 * 120.00186 * 180.02562 * 7 6 4 25 25 H 1.08999 * 109.47407 * 210.00040 * 12 3 2 26 26 H 1.09004 * 109.47132 * 330.00135 * 12 3 2 27 27 H 1.07998 * 128.00861 * 0.02562 * 14 13 12 28 28 H 1.08996 * 109.46757 * 180.29927 * 16 15 14 29 29 H 1.09003 * 109.46987 * 300.29868 * 16 15 14 30 30 H 1.09001 * 109.47223 * 60.29585 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1434 2.0632 1.1808 5 1 1.4029 1.9390 1.9571 6 6 3.2218 2.9143 1.3798 7 7 4.3150 2.7706 0.6613 8 14 3.1213 4.2636 2.6678 9 1 3.6106 3.7429 3.9696 10 1 3.9620 5.4132 2.2470 11 1 1.7114 4.7077 2.8106 12 6 2.3731 2.0326 -1.2633 13 6 1.1609 2.7276 -1.8278 14 6 0.8066 4.0855 -1.6561 15 6 -0.3481 4.2131 -2.3527 16 6 -1.1716 5.4651 -2.5127 17 8 -0.6167 3.0046 -2.8666 18 7 0.2296 2.1954 -2.5654 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 5.0687 3.3651 0.8007 25 1 3.1616 2.7640 -1.0862 26 1 2.7253 1.2832 -1.9723 27 1 1.3355 4.8456 -1.1003 28 1 -2.0469 5.2484 -3.1250 29 1 -1.4923 5.8168 -1.5320 30 1 -0.5713 6.2355 -2.9965 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604541156.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:39 Heat of formation + Delta-G solvation = 73.178346 kcal Electronic energy + Delta-G solvation = -14205.613391 eV Core-core repulsion = 11811.952101 eV Total energy + Delta-G solvation = -2393.661290 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.08130 -36.16609 -33.34985 -32.56960 -31.86071 -29.06932 -27.26279 -26.24912 -23.68031 -22.23004 -20.55195 -19.26109 -16.99036 -16.57160 -16.35951 -14.90990 -14.03148 -13.76850 -13.68990 -13.27204 -13.02166 -12.66022 -12.38558 -11.98692 -11.73600 -11.27765 -11.12710 -10.82959 -10.66857 -10.45206 -10.15725 -9.92848 -9.88265 -9.10898 -8.59539 -8.53420 -6.64952 -5.87563 -3.44712 2.16019 3.12798 3.31418 3.38706 3.42708 3.78859 4.43718 5.09042 5.14532 5.34616 5.55175 5.57283 5.60290 5.83122 5.96918 6.13595 6.23569 6.35908 6.45333 6.50495 6.72605 6.81037 6.93295 6.97383 7.23504 7.45630 7.78163 8.46456 9.11348 9.12064 9.73334 10.33948 11.14527 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.025817 B = 0.013018 C = 0.010078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.311163 B = 2150.417970 C = 2777.629248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.144 3.856 3 N -0.573 5.573 4 C -0.259 4.259 5 H 0.059 0.941 6 C 0.016 3.984 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.284 1.284 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.212 3.788 13 C 0.035 3.965 14 C -0.212 4.212 15 C -0.067 4.067 16 C -0.065 4.065 17 O 0.076 5.924 18 N -0.381 5.381 19 H 0.044 0.956 20 H 0.052 0.948 21 H 0.035 0.965 22 H 0.035 0.965 23 H 0.046 0.954 24 H 0.257 0.743 25 H 0.113 0.887 26 H 0.043 0.957 27 H 0.161 0.839 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.960 3.928 -4.772 9.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.018 3.982 3 N -0.293 5.293 4 C -0.389 4.389 5 H 0.076 0.924 6 C -0.185 4.185 7 N -0.528 5.528 8 Si 0.723 3.277 9 H -0.211 1.211 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.084 3.916 13 C -0.126 4.126 14 C -0.234 4.234 15 C -0.131 4.131 16 C -0.122 4.122 17 O 0.015 5.985 18 N -0.090 5.090 19 H 0.064 0.936 20 H 0.071 0.929 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.130 0.870 26 H 0.062 0.938 27 H 0.178 0.822 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.000 2.774 -5.244 9.176 hybrid contribution 0.215 1.504 1.170 1.918 sum -6.785 4.279 -4.074 8.997 Atomic orbital electron populations 1.22331 0.99981 0.99058 1.01533 1.20868 0.91788 0.86712 0.98835 1.43671 1.75727 1.08235 1.01697 1.18970 1.03945 1.22111 0.93844 0.92352 1.25193 0.94116 1.01138 0.98025 1.69984 1.02715 1.37669 1.42468 0.86439 0.77726 0.81981 0.81532 1.21061 1.21299 1.20253 1.19500 0.89471 0.96668 0.85939 1.25399 0.99817 0.92396 0.95030 1.22434 0.97921 0.98308 1.04720 1.24298 0.98464 0.89687 1.00619 1.20168 0.98477 0.90226 1.03368 1.84731 1.40884 1.15140 1.57766 1.73733 1.01501 1.14833 1.18982 0.93649 0.92920 0.94574 0.94620 0.93562 0.93329 0.86973 0.93844 0.82171 0.90702 0.89938 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.52 10.21 37.16 0.38 -3.14 16 2 C 0.14 3.27 6.44 -4.05 -0.03 3.24 16 3 N -0.57 -14.67 2.41 -174.61 -0.42 -15.09 16 4 C -0.26 -7.08 9.44 -15.06 -0.14 -7.22 16 5 H 0.06 1.62 7.91 -52.49 -0.42 1.20 16 6 C 0.02 0.43 4.95 -17.43 -0.09 0.34 16 7 N -0.89 -24.84 11.52 55.49 0.64 -24.20 16 8 Si 0.89 21.02 29.60 -169.99 -5.03 15.99 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 C 0.21 5.18 5.92 -5.19 -0.03 5.15 16 13 C 0.04 0.78 6.81 -82.10 -0.56 0.23 16 14 C -0.21 -4.23 11.06 -39.38 -0.44 -4.66 16 15 C -0.07 -1.14 7.49 -35.30 -0.26 -1.41 16 16 C -0.06 -0.73 10.45 36.01 0.38 -0.36 16 17 O 0.08 1.47 11.20 17.18 0.19 1.67 16 18 N -0.38 -8.25 10.83 33.42 0.36 -7.89 16 19 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 20 H 0.05 1.15 6.75 -51.93 -0.35 0.80 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.04 0.77 7.83 -51.93 -0.41 0.36 16 23 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 24 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 25 H 0.11 2.95 5.58 -51.93 -0.29 2.67 16 26 H 0.04 1.03 7.86 -51.93 -0.41 0.62 16 27 H 0.16 3.06 8.06 -52.49 -0.42 2.64 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 260.75 15.07 3.93 3.93 Total: -1.00 -29.67 260.75 -5.08 -34.75 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -3.96 Total: -1.33 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -0.79 Total: -7.83 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.58 Total: -47.18 kcal Atomic # 8 Polarization: 1.47 SS G_CDS: 0.19 Total: 1.67 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.67 -5.08 -34.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604541156.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.932 kcal (2) G-P(sol) polarization free energy of solvation -29.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds