Wall clock time and date at job start Sun Mar 29 2020 21:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47425 * 2 1 4 4 C 1.36933 * 120.00369 * 84.69868 * 3 2 1 5 5 H 1.08002 * 120.00133 * 321.50869 * 4 3 2 6 6 C 1.38817 * 119.99897 * 141.50890 * 4 3 2 7 7 N 1.31614 * 120.00275 * 338.83309 * 6 4 3 8 8 Si 1.86803 * 119.99691 * 158.83658 * 6 4 3 9 9 H 1.48496 * 109.47604 * 90.00045 * 8 6 4 10 10 H 1.48506 * 109.46884 * 210.00083 * 8 6 4 11 11 H 1.48505 * 109.47166 * 329.99378 * 8 6 4 12 12 C 1.46504 * 119.99923 * 264.69847 * 3 2 1 13 13 C 1.50706 * 109.46954 * 89.99695 * 12 3 2 14 14 C 1.41382 * 126.79740 * 94.71658 * 13 12 3 15 15 C 1.35456 * 103.98086 * 179.88887 * 14 13 12 16 16 C 1.50703 * 126.77212 * 180.09595 * 15 14 13 17 17 O 1.34040 * 106.44610 * 0.36457 * 15 14 13 18 18 N 1.20914 * 111.56762 * 359.75418 * 17 15 14 19 19 H 1.09004 * 109.46751 * 300.00134 * 1 2 3 20 20 H 1.08995 * 109.46942 * 59.99886 * 1 2 3 21 21 H 1.08994 * 109.47683 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46751 * 239.99866 * 2 1 3 23 23 H 1.08995 * 109.46942 * 120.00114 * 2 1 3 24 24 H 0.97001 * 120.00186 * 180.02562 * 7 6 4 25 25 H 1.08999 * 109.47407 * 210.00040 * 12 3 2 26 26 H 1.09004 * 109.47132 * 330.00135 * 12 3 2 27 27 H 1.07998 * 128.00861 * 0.02562 * 14 13 12 28 28 H 1.08996 * 109.46757 * 180.29927 * 16 15 14 29 29 H 1.09003 * 109.46987 * 300.29868 * 16 15 14 30 30 H 1.09001 * 109.47223 * 60.29585 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1434 2.0632 1.1808 5 1 1.4029 1.9390 1.9571 6 6 3.2218 2.9143 1.3798 7 7 4.3150 2.7706 0.6613 8 14 3.1213 4.2636 2.6678 9 1 3.6106 3.7429 3.9696 10 1 3.9620 5.4132 2.2470 11 1 1.7114 4.7077 2.8106 12 6 2.3731 2.0326 -1.2633 13 6 1.1609 2.7276 -1.8278 14 6 0.8066 4.0855 -1.6561 15 6 -0.3481 4.2131 -2.3527 16 6 -1.1716 5.4651 -2.5127 17 8 -0.6167 3.0046 -2.8666 18 7 0.2296 2.1954 -2.5654 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 5.0687 3.3651 0.8007 25 1 3.1616 2.7640 -1.0862 26 1 2.7253 1.2832 -1.9723 27 1 1.3355 4.8456 -1.1003 28 1 -2.0469 5.2484 -3.1250 29 1 -1.4923 5.8168 -1.5320 30 1 -0.5713 6.2355 -2.9965 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604541156.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:39 Heat of formation + Delta-G solvation = 55.983480 kcal Electronic energy + Delta-G solvation = -14206.359016 eV Core-core repulsion = 11811.952101 eV Total energy + Delta-G solvation = -2394.406916 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -45.67619 -38.06196 -34.89917 -34.08468 -33.77633 -30.91623 -28.49058 -28.16664 -25.58605 -23.83563 -22.39000 -20.89317 -18.73666 -18.27472 -18.01766 -16.88439 -15.77099 -15.64273 -15.41937 -14.54937 -14.29119 -14.19237 -13.90849 -13.51232 -13.22316 -13.15986 -12.85686 -12.66967 -12.44642 -12.37538 -12.00619 -11.72528 -11.65269 -10.77796 -10.57341 -10.05488 -8.66733 -7.91270 -5.54213 0.71193 1.42046 1.47130 1.50614 1.57687 2.44372 2.49076 3.17257 3.59030 3.71145 3.82713 4.32665 4.37087 4.47031 4.61382 4.72377 4.76303 4.77066 4.88723 4.98283 5.02898 5.15655 5.19086 5.36143 5.45886 5.51235 5.65076 6.41465 7.08032 7.57180 7.73299 8.31498 9.08502 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.025817 B = 0.013018 C = 0.010078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.311163 B = 2150.417970 C = 2777.629248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.139 3.861 3 N -0.588 5.588 4 C -0.274 4.274 5 H 0.049 0.951 6 C -0.024 4.024 7 N -0.914 5.914 8 Si 0.958 3.042 9 H -0.283 1.283 10 H -0.283 1.283 11 H -0.272 1.272 12 C 0.220 3.780 13 C 0.013 3.987 14 C -0.244 4.244 15 C -0.037 4.037 16 C -0.064 4.064 17 O 0.082 5.918 18 N -0.397 5.397 19 H 0.033 0.967 20 H 0.041 0.959 21 H 0.067 0.933 22 H 0.042 0.958 23 H 0.041 0.959 24 H 0.257 0.743 25 H 0.090 0.910 26 H 0.037 0.963 27 H 0.163 0.837 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.538 5.215 -4.898 11.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.014 3.986 3 N -0.310 5.310 4 C -0.404 4.404 5 H 0.067 0.933 6 C -0.222 4.222 7 N -0.557 5.557 8 Si 0.785 3.215 9 H -0.209 1.209 10 H -0.208 1.208 11 H -0.197 1.197 12 C 0.092 3.908 13 C -0.148 4.148 14 C -0.266 4.266 15 C -0.101 4.101 16 C -0.121 4.121 17 O 0.019 5.981 18 N -0.106 5.106 19 H 0.052 0.948 20 H 0.060 0.940 21 H 0.086 0.914 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.108 0.892 26 H 0.056 0.944 27 H 0.181 0.819 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.586 4.043 -5.377 10.907 hybrid contribution 0.658 1.096 1.144 1.715 sum -7.928 5.139 -4.233 10.352 Atomic orbital electron populations 1.22148 0.98179 1.00718 1.00289 1.20974 0.93160 0.85622 0.98864 1.43849 1.76219 1.09265 1.01634 1.19083 1.03864 1.22998 0.94418 0.93303 1.25859 0.93594 1.02746 1.00017 1.70093 1.03235 1.38385 1.43964 0.85462 0.77771 0.79282 0.79031 1.20927 1.20833 1.19742 1.19191 0.90041 0.95981 0.85609 1.25090 0.99647 0.93705 0.96329 1.22530 0.99740 0.97466 1.06841 1.25182 0.97408 0.90116 0.97377 1.20502 0.98875 0.87625 1.05125 1.84691 1.40038 1.15936 1.57441 1.73698 1.01762 1.15796 1.19346 0.94816 0.94036 0.91423 0.93996 0.94037 0.93369 0.89229 0.94435 0.81950 0.88265 0.88320 0.87506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.27 10.21 71.98 0.73 -5.54 16 2 C 0.14 6.35 6.44 86.38 0.56 6.91 16 3 N -0.59 -30.65 2.41 -706.33 -1.70 -32.36 16 4 C -0.27 -15.16 9.44 84.04 0.79 -14.37 16 5 H 0.05 2.75 7.91 -2.91 -0.02 2.73 16 6 C -0.02 -1.30 4.95 84.86 0.42 -0.88 16 7 N -0.91 -52.03 11.52 21.65 0.25 -51.78 16 8 Si 0.96 43.24 29.60 68.60 2.03 45.27 16 9 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 C 0.22 11.01 5.92 85.63 0.51 11.51 16 13 C 0.01 0.57 6.81 43.58 0.30 0.87 16 14 C -0.24 -9.54 11.06 22.40 0.25 -9.29 16 15 C -0.04 -1.17 7.49 25.04 0.19 -0.98 16 16 C -0.06 -1.18 10.45 71.24 0.74 -0.43 16 17 O 0.08 3.00 11.20 71.65 0.80 3.81 16 18 N -0.40 -17.02 10.83 -49.56 -0.54 -17.56 16 19 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 20 H 0.04 1.77 6.75 -2.39 -0.02 1.75 16 21 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 22 H 0.04 1.82 7.83 -2.38 -0.02 1.81 16 23 H 0.04 1.90 8.08 -2.39 -0.02 1.88 16 24 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 25 H 0.09 4.90 5.58 -2.39 -0.01 4.88 16 26 H 0.04 1.85 7.86 -2.38 -0.02 1.83 16 27 H 0.16 6.15 8.06 -2.91 -0.02 6.12 16 28 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -63.89 260.75 6.45 -57.44 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 1.12 Total: 7.36 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 4.49 Total: -12.19 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -1.99 Total: -101.69 kcal Atomic # 8 Polarization: 3.00 SS G_CDS: 0.80 Total: 3.81 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -63.89 6.45 -57.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604541156.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.425 kcal (2) G-P(sol) polarization free energy of solvation -63.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds