Wall clock time and date at job start Sun Mar 29 2020 21:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46896 * 110.99868 * 2 1 4 4 C 1.52997 * 109.47530 * 293.95661 * 3 2 1 5 5 C 1.50703 * 109.47329 * 180.02562 * 4 3 2 6 6 H 1.07997 * 119.99736 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99882 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00197 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99646 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46982 * 90.00456 * 9 7 5 11 11 H 1.48503 * 109.46829 * 209.99682 * 9 7 5 12 12 H 1.48499 * 109.47294 * 330.00115 * 9 7 5 13 13 C 1.46893 * 110.99891 * 123.95805 * 2 1 3 14 14 C 1.50702 * 109.47516 * 66.04524 * 13 2 1 15 15 C 1.41379 * 126.80093 * 94.70494 * 14 13 2 16 16 C 1.35446 * 103.98652 * 180.26598 * 15 14 13 17 17 O 1.34044 * 106.44743 * 0.02562 * 16 15 14 18 18 N 1.20918 * 111.56370 * 359.97438 * 17 16 15 19 19 H 1.08992 * 109.47126 * 296.04353 * 1 2 3 20 20 H 1.08996 * 109.47188 * 56.04588 * 1 2 3 21 21 H 1.09007 * 109.46947 * 176.04396 * 1 2 3 22 22 H 1.09006 * 109.46996 * 53.95835 * 3 2 1 23 23 H 1.08999 * 109.47071 * 173.95311 * 3 2 1 24 24 H 1.09002 * 109.46671 * 299.99944 * 4 3 2 25 25 H 1.08999 * 109.47229 * 59.99747 * 4 3 2 26 26 H 0.97008 * 119.99760 * 180.02562 * 8 7 5 27 27 H 1.08995 * 109.47476 * 306.04332 * 13 2 1 28 28 H 1.09006 * 109.46874 * 186.04579 * 13 2 1 29 29 H 1.08001 * 128.00721 * 0.25149 * 15 14 13 30 30 H 1.08004 * 126.77907 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1720 3.4642 -1.3184 6 1 2.7200 3.8322 -0.4636 7 6 1.9670 4.2813 -2.4098 8 7 1.2992 3.8334 -3.4504 9 14 2.6365 6.0253 -2.4097 10 1 4.0087 6.0288 -2.9776 11 1 1.7575 6.8930 -3.2341 12 1 2.6756 6.5405 -1.0174 13 6 1.9954 -0.7660 1.1375 14 6 1.6369 -2.2205 0.9727 15 6 2.4411 -3.2311 0.3977 16 6 1.6752 -4.3452 0.4795 17 8 0.5256 -3.9736 1.0602 18 7 0.5230 -2.7940 1.3261 19 1 -0.3633 0.4512 0.9232 20 1 -0.3633 0.5740 -0.8524 21 1 -0.3633 -1.0253 -0.0709 22 1 1.5611 1.9273 0.8310 23 1 3.0797 1.3444 0.1083 24 1 2.0658 1.5016 -2.1491 25 1 0.5472 2.0845 -1.4264 26 1 1.1553 4.4082 -4.2185 27 1 1.5612 -0.3874 2.0627 28 1 3.0798 -0.6611 1.1755 29 1 3.4358 -3.1366 -0.0123 30 1 1.9383 -5.3370 0.1426 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610079911.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:17 Heat of formation + Delta-G solvation = 40.270959 kcal Electronic energy + Delta-G solvation = -13435.662917 eV Core-core repulsion = 11040.574655 eV Total energy + Delta-G solvation = -2395.088262 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.84723 -38.92195 -35.58193 -34.62347 -32.59627 -31.58475 -28.89045 -27.36918 -24.88748 -23.85128 -21.95373 -21.54312 -18.71076 -18.61010 -18.41617 -16.61350 -16.48140 -16.20916 -16.04074 -14.99055 -14.54585 -14.22876 -14.09104 -13.48961 -13.32858 -12.95780 -12.85735 -12.65271 -12.42585 -12.14493 -11.85119 -11.49316 -11.29589 -11.01394 -10.54187 -10.48944 -9.33683 -8.19900 -6.31560 0.68259 1.31237 1.41406 1.42994 1.53969 2.40911 2.54494 3.05922 3.13878 3.36057 3.66169 4.20081 4.25091 4.35597 4.41055 4.47731 4.62425 4.67328 4.70317 4.89169 4.95746 5.06067 5.20959 5.44595 5.61617 5.75579 6.00684 6.11959 6.28058 6.85637 7.37842 7.41920 8.92511 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.078924 B = 0.005487 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.687753 B = 5101.994019 C = 5142.812718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.547 5.547 3 C 0.080 3.920 4 C 0.035 3.965 5 C -0.544 4.544 6 H 0.063 0.937 7 C 0.001 3.999 8 N -0.933 5.933 9 Si 0.968 3.032 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.263 1.263 13 C 0.130 3.870 14 C 0.009 3.991 15 C -0.232 4.232 16 C -0.045 4.045 17 O 0.090 5.910 18 N -0.397 5.397 19 H 0.024 0.976 20 H 0.055 0.945 21 H 0.064 0.936 22 H 0.024 0.976 23 H 0.076 0.924 24 H -0.006 1.006 25 H -0.008 1.008 26 H 0.264 0.736 27 H 0.045 0.955 28 H 0.113 0.887 29 H 0.190 0.810 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.145 -14.599 8.386 17.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.272 5.272 3 C -0.047 4.047 4 C -0.003 4.003 5 C -0.582 4.582 6 H 0.081 0.919 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.792 3.208 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.187 1.187 13 C 0.002 3.998 14 C -0.149 4.149 15 C -0.254 4.254 16 C -0.126 4.126 17 O 0.024 5.976 18 N -0.103 5.103 19 H 0.042 0.958 20 H 0.074 0.926 21 H 0.083 0.917 22 H 0.042 0.958 23 H 0.095 0.905 24 H 0.012 0.988 25 H 0.010 0.990 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.131 0.869 29 H 0.207 0.793 30 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 2.114 -14.339 8.397 16.751 hybrid contribution 0.535 1.262 -0.061 1.373 sum 2.650 -13.077 8.336 15.732 Atomic orbital electron populations 1.22266 0.87762 1.01240 1.00061 1.61973 1.08108 1.14956 1.42185 1.22039 0.99369 0.85586 0.97729 1.18942 0.94991 0.93872 0.92478 1.21622 1.35362 0.98809 1.02445 0.91855 1.25979 0.95362 1.03340 0.95015 1.70121 1.41992 1.38398 1.06840 0.85406 0.78294 0.78556 0.78516 1.19569 1.20886 1.18668 1.20427 1.01705 0.85687 0.92020 1.23691 0.91381 0.98890 1.00986 1.23061 1.04469 0.91395 1.06497 1.26867 0.84440 1.03172 0.98141 1.84768 1.36306 1.18747 1.57780 1.73840 1.22608 0.92289 1.21538 0.95754 0.92616 0.91737 0.95805 0.90538 0.98771 0.98976 0.92764 0.93670 0.86915 0.79250 0.71911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.35 9.16 127.69 1.17 2.52 16 2 N -0.55 -20.94 4.75 -927.07 -4.41 -25.34 16 3 C 0.08 3.41 4.90 86.30 0.42 3.83 16 4 C 0.03 1.88 4.90 29.85 0.15 2.03 16 5 C -0.54 -31.19 9.11 25.60 0.23 -30.96 16 6 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.00 0.05 5.46 84.65 0.46 0.52 16 8 N -0.93 -57.64 13.29 21.44 0.28 -57.36 16 9 Si 0.97 44.34 29.54 68.60 2.03 46.36 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 13 C 0.13 3.97 5.55 85.56 0.48 4.44 16 14 C 0.01 0.25 6.06 43.58 0.26 0.51 16 15 C -0.23 -4.93 11.12 22.40 0.25 -4.68 16 16 C -0.05 -0.74 12.30 67.17 0.83 0.09 16 17 O 0.09 2.17 11.20 71.60 0.80 2.97 16 18 N -0.40 -11.93 11.08 -49.55 -0.55 -12.48 16 19 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 20 H 0.06 2.38 6.30 -2.39 -0.02 2.37 16 21 H 0.06 2.37 6.55 -2.38 -0.02 2.36 16 22 H 0.02 1.01 8.12 -2.38 -0.02 0.99 16 23 H 0.08 3.05 7.93 -2.39 -0.02 3.03 16 24 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 25 H -0.01 -0.47 6.47 -2.39 -0.02 -0.49 16 26 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 27 H 0.05 1.38 8.12 -2.39 -0.02 1.36 16 28 H 0.11 2.95 7.93 -2.38 -0.02 2.93 16 29 H 0.19 3.13 8.06 -2.91 -0.02 3.11 16 30 H 0.27 1.18 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -69.85 259.62 3.52 -66.33 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: 1.12 Total: 1.23 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: 4.25 Total: -21.70 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -4.67 Total: -95.18 kcal Atomic # 8 Polarization: 2.17 SS G_CDS: 0.80 Total: 2.97 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -69.85 3.52 -66.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610079911.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.598 kcal (2) G-P(sol) polarization free energy of solvation -69.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds