Wall clock time and date at job start Sun Mar 29 2020 21:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47305 * 2 1 4 4 C 1.36938 * 120.00116 * 94.58110 * 3 2 1 5 5 H 1.08000 * 119.99579 * 37.96572 * 4 3 2 6 6 C 1.38814 * 119.99928 * 217.68802 * 4 3 2 7 7 N 1.31623 * 119.99613 * 211.89233 * 6 4 3 8 8 Si 1.86799 * 120.00163 * 31.89811 * 6 4 3 9 9 H 1.48493 * 109.47126 * 85.98618 * 8 6 4 10 10 H 1.48501 * 109.46944 * 205.99100 * 8 6 4 11 11 H 1.48499 * 109.46908 * 325.98611 * 8 6 4 12 12 C 1.46502 * 120.00179 * 274.58938 * 3 2 1 13 13 C 1.50703 * 109.47178 * 275.34154 * 12 3 2 14 14 N 1.30256 * 125.62206 * 89.68580 * 13 12 3 15 15 C 1.34474 * 108.70154 * 179.84436 * 14 13 12 16 16 C 1.34330 * 107.66691 * 0.42198 * 15 14 13 17 17 C 1.50704 * 126.44150 * 179.76704 * 16 15 14 18 18 O 1.33969 * 125.61668 * 269.99908 * 13 12 3 19 19 H 1.09004 * 109.46760 * 304.92237 * 1 2 3 20 20 H 1.08992 * 109.47538 * 64.92498 * 1 2 3 21 21 H 1.09002 * 109.47238 * 184.92550 * 1 2 3 22 22 H 1.09001 * 109.47323 * 240.00502 * 2 1 3 23 23 H 1.08998 * 109.47481 * 120.00232 * 2 1 3 24 24 H 0.97003 * 119.99504 * 180.02562 * 7 6 4 25 25 H 1.09006 * 109.47234 * 35.33795 * 12 3 2 26 26 H 1.08999 * 109.47339 * 155.33781 * 12 3 2 27 27 H 1.07996 * 126.16913 * 180.17208 * 15 14 13 28 28 H 1.09003 * 109.47052 * 180.02562 * 17 16 15 29 29 H 1.08993 * 109.47177 * 300.00209 * 17 16 15 30 30 H 1.09005 * 109.47088 * 60.00438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3359 1.9952 1.1821 5 1 2.8167 1.4341 1.9698 6 6 2.0449 3.3400 1.3658 7 7 2.8236 4.0844 2.1221 8 14 0.5483 4.0932 0.5398 9 1 -0.6467 3.8855 1.3964 10 1 0.7707 5.5484 0.3445 11 1 0.3314 3.4443 -0.7782 12 6 2.1668 2.1057 -1.2647 13 6 3.5040 1.7778 -1.8774 14 7 3.7416 0.7953 -2.6990 15 6 5.0435 0.8196 -3.0351 16 6 5.6130 1.8484 -2.3858 17 6 7.0617 2.2583 -2.4539 18 8 4.6455 2.4452 -1.6623 19 1 -0.3633 0.5883 0.8427 20 1 -0.3634 0.4355 -0.9307 21 1 -0.3634 -1.0239 0.0882 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 2.6201 5.0241 2.2507 25 1 1.3714 1.8096 -1.9486 26 1 2.1055 3.1779 -1.0785 27 1 5.5421 0.1331 -3.7032 28 1 7.2233 3.1288 -1.8181 29 1 7.6885 1.4359 -2.1095 30 1 7.3210 2.5065 -3.4832 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610368147.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:45 Heat of formation + Delta-G solvation = 42.356469 kcal Electronic energy + Delta-G solvation = -14124.680935 eV Core-core repulsion = 11729.683108 eV Total energy + Delta-G solvation = -2394.997827 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.54111 -36.34437 -33.93671 -32.19295 -32.01271 -30.00028 -27.64730 -24.86828 -23.82043 -21.60990 -20.77952 -19.95179 -17.21470 -16.27420 -15.88042 -15.00886 -14.45682 -13.99237 -13.80957 -13.28709 -13.00106 -12.82985 -12.48235 -12.20411 -11.93795 -11.79002 -11.35888 -10.77468 -10.70380 -10.59552 -10.28260 -10.04395 -9.85355 -9.61827 -8.58089 -8.03306 -7.05459 -6.17348 -3.50398 2.11539 3.24470 3.34012 3.41026 3.44309 3.47409 4.44144 4.78431 5.01171 5.21768 5.26256 5.44767 5.59301 5.63147 5.86195 5.93931 6.14446 6.19840 6.28667 6.43854 6.49091 6.56305 6.72209 6.78081 6.99630 7.05179 7.89011 8.29034 8.49289 8.83614 9.57612 9.98705 10.97588 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.029496 B = 0.012417 C = 0.010070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.065527 B = 2254.397445 C = 2779.888511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.140 3.860 3 N -0.582 5.582 4 C -0.287 4.287 5 H 0.078 0.922 6 C 0.049 3.951 7 N -0.872 5.872 8 Si 0.852 3.148 9 H -0.283 1.283 10 H -0.292 1.292 11 H -0.260 1.260 12 C 0.228 3.772 13 C 0.203 3.797 14 N -0.507 5.507 15 C -0.051 4.051 16 C -0.076 4.076 17 C -0.062 4.062 18 O -0.187 6.187 19 H 0.056 0.944 20 H 0.042 0.958 21 H 0.043 0.957 22 H 0.046 0.954 23 H 0.055 0.945 24 H 0.266 0.734 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.171 0.829 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.630 -3.640 -8.501 9.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.303 5.303 4 C -0.415 4.415 5 H 0.095 0.905 6 C -0.154 4.154 7 N -0.510 5.510 8 Si 0.679 3.321 9 H -0.210 1.210 10 H -0.219 1.219 11 H -0.185 1.185 12 C 0.098 3.902 13 C -0.007 4.007 14 N -0.237 5.237 15 C -0.190 4.190 16 C -0.131 4.131 17 C -0.119 4.119 18 O -0.073 6.073 19 H 0.075 0.925 20 H 0.061 0.939 21 H 0.062 0.938 22 H 0.065 0.935 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.188 0.812 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.213 -3.864 -8.530 9.622 hybrid contribution -0.154 0.904 -0.122 0.925 sum 2.059 -2.960 -8.652 9.373 Atomic orbital electron populations 1.22296 0.99177 0.99866 1.01445 1.20979 0.91934 0.85767 0.99859 1.44154 1.73271 1.11754 1.01131 1.18699 1.35765 0.93987 0.93065 0.90467 1.25485 0.97196 0.96318 0.96414 1.70047 1.34293 1.06474 1.40189 0.87376 0.86313 0.77847 0.80589 1.20981 1.21879 1.18516 1.20275 0.83960 0.98217 0.87708 1.28859 0.90281 0.88263 0.93266 1.70423 1.15928 1.21559 1.15765 1.22874 0.91065 1.00362 1.04714 1.23347 0.92796 0.98211 0.98704 1.20131 0.86121 1.02703 1.02963 1.84554 1.17803 1.50075 1.54868 0.92453 0.93865 0.93802 0.93540 0.92669 0.92411 0.89920 0.89858 0.81154 0.90640 0.90143 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 10.24 37.15 0.38 -2.68 16 2 C 0.14 2.88 6.41 -4.05 -0.03 2.85 16 3 N -0.58 -14.00 2.03 -174.61 -0.35 -14.35 16 4 C -0.29 -7.95 9.78 -15.06 -0.15 -8.10 16 5 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 6 C 0.05 1.38 5.04 -17.43 -0.09 1.30 16 7 N -0.87 -25.92 13.97 55.49 0.78 -25.15 16 8 Si 0.85 20.75 26.49 -169.99 -4.50 16.25 16 9 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.26 -5.88 5.49 56.52 0.31 -5.57 16 12 C 0.23 5.16 4.48 -5.19 -0.02 5.14 16 13 C 0.20 4.58 7.92 -12.95 -0.10 4.48 16 14 N -0.51 -10.72 11.29 -11.10 -0.13 -10.85 16 15 C -0.05 -0.93 11.80 -17.77 -0.21 -1.14 16 16 C -0.08 -1.39 7.39 -35.69 -0.26 -1.66 16 17 C -0.06 -0.79 10.43 36.01 0.38 -0.41 16 18 O -0.19 -4.27 10.78 5.37 0.06 -4.21 16 19 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 20 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 21 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.93 8.11 -51.93 -0.42 0.51 16 23 H 0.05 1.14 8.00 -51.93 -0.42 0.72 16 24 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.08 1.69 8.09 -51.93 -0.42 1.27 16 26 H 0.08 1.97 4.45 -51.93 -0.23 1.74 16 27 H 0.17 2.40 8.06 -52.49 -0.42 1.97 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 259.68 15.07 3.91 3.91 Total: -1.00 -31.19 259.68 -4.44 -35.63 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -4.10 Total: -1.03 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -0.10 Total: -0.21 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.30 Total: -50.35 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: 0.06 Total: -4.21 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.50 Total: 16.25 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.19 -4.44 -35.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610368147.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.987 kcal (2) G-P(sol) polarization free energy of solvation -31.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds