Wall clock time and date at job start Sun Mar 29 2020 21:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47305 * 2 1 4 4 C 1.36938 * 120.00116 * 94.58110 * 3 2 1 5 5 H 1.08000 * 119.99579 * 37.96572 * 4 3 2 6 6 C 1.38814 * 119.99928 * 217.68802 * 4 3 2 7 7 N 1.31623 * 119.99613 * 211.89233 * 6 4 3 8 8 Si 1.86799 * 120.00163 * 31.89811 * 6 4 3 9 9 H 1.48493 * 109.47126 * 85.98618 * 8 6 4 10 10 H 1.48501 * 109.46944 * 205.99100 * 8 6 4 11 11 H 1.48499 * 109.46908 * 325.98611 * 8 6 4 12 12 C 1.46502 * 120.00179 * 274.58938 * 3 2 1 13 13 C 1.50703 * 109.47178 * 275.34154 * 12 3 2 14 14 N 1.30256 * 125.62206 * 89.68580 * 13 12 3 15 15 C 1.34474 * 108.70154 * 179.84436 * 14 13 12 16 16 C 1.34330 * 107.66691 * 0.42198 * 15 14 13 17 17 C 1.50704 * 126.44150 * 179.76704 * 16 15 14 18 18 O 1.33969 * 125.61668 * 269.99908 * 13 12 3 19 19 H 1.09004 * 109.46760 * 304.92237 * 1 2 3 20 20 H 1.08992 * 109.47538 * 64.92498 * 1 2 3 21 21 H 1.09002 * 109.47238 * 184.92550 * 1 2 3 22 22 H 1.09001 * 109.47323 * 240.00502 * 2 1 3 23 23 H 1.08998 * 109.47481 * 120.00232 * 2 1 3 24 24 H 0.97003 * 119.99504 * 180.02562 * 7 6 4 25 25 H 1.09006 * 109.47234 * 35.33795 * 12 3 2 26 26 H 1.08999 * 109.47339 * 155.33781 * 12 3 2 27 27 H 1.07996 * 126.16913 * 180.17208 * 15 14 13 28 28 H 1.09003 * 109.47052 * 180.02562 * 17 16 15 29 29 H 1.08993 * 109.47177 * 300.00209 * 17 16 15 30 30 H 1.09005 * 109.47088 * 60.00438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3359 1.9952 1.1821 5 1 2.8167 1.4341 1.9698 6 6 2.0449 3.3400 1.3658 7 7 2.8236 4.0844 2.1221 8 14 0.5483 4.0932 0.5398 9 1 -0.6467 3.8855 1.3964 10 1 0.7707 5.5484 0.3445 11 1 0.3314 3.4443 -0.7782 12 6 2.1668 2.1057 -1.2647 13 6 3.5040 1.7778 -1.8774 14 7 3.7416 0.7953 -2.6990 15 6 5.0435 0.8196 -3.0351 16 6 5.6130 1.8484 -2.3858 17 6 7.0617 2.2583 -2.4539 18 8 4.6455 2.4452 -1.6623 19 1 -0.3633 0.5883 0.8427 20 1 -0.3634 0.4355 -0.9307 21 1 -0.3634 -1.0239 0.0882 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 2.6201 5.0241 2.2507 25 1 1.3714 1.8096 -1.9486 26 1 2.1055 3.1779 -1.0785 27 1 5.5421 0.1331 -3.7032 28 1 7.2233 3.1288 -1.8181 29 1 7.6885 1.4359 -2.1095 30 1 7.3210 2.5065 -3.4832 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610368147.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:45 Heat of formation + Delta-G solvation = 19.850064 kcal Electronic energy + Delta-G solvation = -14125.656886 eV Core-core repulsion = 11729.683108 eV Total energy + Delta-G solvation = -2395.973778 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.11690 -38.16313 -35.54756 -34.11726 -33.50066 -31.58021 -29.33129 -26.43395 -25.60716 -23.18375 -22.38975 -21.67110 -19.18000 -17.92368 -17.51766 -16.89544 -16.16317 -15.57248 -15.40488 -15.04461 -14.54425 -14.13783 -13.99920 -13.73256 -13.42338 -13.19110 -13.01425 -12.67035 -12.37719 -12.30751 -12.18180 -11.64862 -11.53397 -11.42510 -10.67383 -9.49739 -8.99904 -8.32080 -5.64438 0.58296 1.34797 1.44702 1.51128 1.77320 1.98110 2.40134 2.92140 3.33243 3.38441 3.94302 4.18249 4.25791 4.38169 4.51370 4.62128 4.70293 4.75476 4.78703 4.80823 5.07044 5.14887 5.22032 5.32011 5.47960 5.52723 5.84395 6.12660 6.83797 6.91568 7.50268 7.94931 8.87246 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.029496 B = 0.012417 C = 0.010070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.065527 B = 2254.397445 C = 2779.888511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.138 3.862 3 N -0.593 5.593 4 C -0.284 4.284 5 H 0.034 0.966 6 C 0.000 4.000 7 N -0.923 5.923 8 Si 0.918 3.082 9 H -0.283 1.283 10 H -0.295 1.295 11 H -0.231 1.231 12 C 0.229 3.771 13 C 0.170 3.830 14 N -0.508 5.508 15 C -0.060 4.060 16 C -0.077 4.077 17 C -0.061 4.061 18 O -0.222 6.222 19 H 0.039 0.961 20 H 0.052 0.948 21 H 0.075 0.925 22 H 0.055 0.945 23 H 0.044 0.956 24 H 0.267 0.733 25 H 0.107 0.893 26 H 0.068 0.932 27 H 0.213 0.787 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.447 -4.439 -10.819 11.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.014 3.986 3 N -0.315 5.315 4 C -0.413 4.413 5 H 0.052 0.948 6 C -0.200 4.200 7 N -0.564 5.564 8 Si 0.742 3.258 9 H -0.210 1.210 10 H -0.221 1.221 11 H -0.154 1.154 12 C 0.100 3.900 13 C -0.039 4.039 14 N -0.239 5.239 15 C -0.199 4.199 16 C -0.130 4.130 17 C -0.118 4.118 18 O -0.108 6.108 19 H 0.058 0.942 20 H 0.071 0.929 21 H 0.094 0.906 22 H 0.073 0.927 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.125 0.875 26 H 0.086 0.914 27 H 0.229 0.771 28 H 0.088 0.912 29 H 0.123 0.877 30 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.020 -4.691 -10.879 12.018 hybrid contribution 0.103 1.049 0.546 1.187 sum 2.123 -3.642 -10.333 11.159 Atomic orbital electron populations 1.22173 0.96713 1.01732 1.01157 1.21070 0.93849 0.83945 0.99750 1.44209 1.74135 1.12734 1.00468 1.18481 1.34987 0.93962 0.93838 0.94824 1.26068 0.99375 0.96783 0.97772 1.70146 1.36161 1.06905 1.43172 0.86330 0.81744 0.76786 0.80926 1.20968 1.22147 1.15438 1.20176 0.85150 0.97232 0.87420 1.28554 0.90466 0.89601 0.95273 1.70377 1.17723 1.20658 1.15103 1.23542 0.90006 1.01074 1.05239 1.24450 0.94081 0.97552 0.96916 1.20430 0.82796 1.03344 1.05200 1.84529 1.18904 1.51298 1.56086 0.94186 0.92872 0.90600 0.92676 0.93712 0.92392 0.87507 0.91368 0.77070 0.91230 0.87723 0.86735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.38 10.24 71.98 0.74 -4.65 16 2 C 0.14 5.57 6.41 86.38 0.55 6.12 16 3 N -0.59 -28.51 2.03 -706.34 -1.43 -29.95 16 4 C -0.28 -16.19 9.78 84.03 0.82 -15.37 16 5 H 0.03 2.16 8.06 -2.91 -0.02 2.14 16 6 C 0.00 -0.02 5.04 84.86 0.43 0.41 16 7 N -0.92 -56.87 13.97 21.65 0.30 -56.57 16 8 Si 0.92 43.26 26.49 68.60 1.82 45.08 16 9 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 10 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 11 H -0.23 -9.70 5.49 99.48 0.55 -9.15 16 12 C 0.23 10.17 4.48 85.63 0.38 10.55 16 13 C 0.17 7.56 7.92 88.34 0.70 8.26 16 14 N -0.51 -20.56 11.29 -303.83 -3.43 -23.99 16 15 C -0.06 -2.02 11.80 83.39 0.98 -1.03 16 16 C -0.08 -2.65 7.39 24.79 0.18 -2.47 16 17 C -0.06 -1.37 10.43 71.24 0.74 -0.62 16 18 O -0.22 -10.06 10.78 -3.71 -0.04 -10.10 16 19 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 20 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 21 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 22 H 0.05 2.11 8.11 -2.39 -0.02 2.09 16 23 H 0.04 1.86 8.00 -2.39 -0.02 1.84 16 24 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 25 H 0.11 4.13 8.09 -2.38 -0.02 4.11 16 26 H 0.07 3.19 4.45 -2.39 -0.01 3.18 16 27 H 0.21 5.03 8.06 -2.91 -0.02 5.01 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 29 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -69.42 259.68 3.71 -65.72 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 0.96 Total: 8.59 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 5.53 Total: 1.21 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -4.56 Total: -110.50 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.04 Total: -10.10 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.82 Total: 45.08 kcal Total: -69.42 3.71 -65.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610368147.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.570 kcal (2) G-P(sol) polarization free energy of solvation -69.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds