Wall clock time and date at job start Sun Mar 29 2020 21:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47158 * 2 1 4 4 C 1.34332 * 126.44591 * 89.99740 * 3 2 1 5 5 N 1.34474 * 107.67118 * 180.02562 * 4 3 2 6 6 C 1.30254 * 108.70030 * 0.02562 * 5 4 3 7 7 C 1.50699 * 125.61606 * 180.26243 * 6 5 4 8 8 N 1.46496 * 109.47169 * 89.69433 * 7 6 5 9 9 C 1.46511 * 119.99924 * 269.99582 * 8 7 6 10 10 C 1.36936 * 120.00631 * 89.99792 * 8 7 6 11 11 H 1.08006 * 119.99720 * 22.34489 * 10 8 7 12 12 C 1.38807 * 120.00360 * 202.34724 * 10 8 7 13 13 N 1.31611 * 120.00092 * 11.34327 * 12 10 8 14 14 Si 1.86799 * 119.99982 * 191.34406 * 12 10 8 15 15 H 1.48500 * 109.47529 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47233 * 119.99942 * 14 12 10 17 17 H 1.48500 * 109.47257 * 239.99907 * 14 12 10 18 18 O 1.33969 * 108.76228 * 359.97438 * 6 5 4 19 19 H 1.08994 * 109.47371 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.47367 * 300.00113 * 1 2 3 21 21 H 1.09004 * 109.47030 * 60.00086 * 1 2 3 22 22 H 1.09003 * 109.47367 * 239.99887 * 2 1 3 23 23 H 1.09004 * 109.47030 * 119.99914 * 2 1 3 24 24 H 1.08001 * 126.16113 * 0.02562 * 4 3 2 25 25 H 1.09007 * 109.46975 * 209.68827 * 7 6 5 26 26 H 1.09002 * 109.47423 * 329.68840 * 7 6 5 27 27 H 1.08997 * 109.46883 * 94.21309 * 9 8 7 28 28 H 1.08995 * 109.47146 * 214.21350 * 9 8 7 29 29 H 1.09002 * 109.46781 * 334.21630 * 9 8 7 30 30 H 0.97003 * 120.00561 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2983 2.1732 1.0806 5 7 2.7222 3.3737 0.6478 6 6 2.7208 3.3724 -0.6548 7 6 3.1333 4.5248 -1.5339 8 7 4.5686 4.4361 -1.8137 9 6 5.5303 5.0908 -0.9232 10 6 5.0114 3.7415 -2.9076 11 1 4.3489 3.5706 -3.7433 12 6 6.3117 3.2570 -2.9424 13 7 7.0465 3.2650 -1.8505 14 14 7.0188 2.5936 -4.5391 15 1 5.9976 2.6944 -5.6124 16 1 8.2157 3.3869 -4.9178 17 1 7.4052 1.1714 -4.3562 18 8 2.2983 2.1758 -1.0840 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.1910 1.8687 2.1112 25 1 2.5774 4.4842 -2.4707 26 1 2.9197 5.4647 -1.0251 27 1 5.8831 4.3753 -0.1805 28 1 6.3757 5.4555 -1.5065 29 1 5.0475 5.9286 -0.4200 30 1 7.9553 2.9268 -1.8748 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610370189.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:28 Heat of formation + Delta-G solvation = 14.190770 kcal Electronic energy + Delta-G solvation = -13893.045756 eV Core-core repulsion = 11496.826573 eV Total energy + Delta-G solvation = -2396.219184 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.06011 -37.67253 -35.49974 -35.12598 -33.51624 -30.54303 -28.13654 -27.64420 -24.63415 -23.69834 -22.59228 -21.59715 -18.88125 -17.90556 -17.49505 -16.82183 -15.85182 -15.68071 -15.44985 -15.11847 -14.80160 -14.03685 -13.78288 -13.41353 -13.13996 -12.87788 -12.67881 -12.55870 -12.33553 -12.17227 -12.09284 -12.06491 -11.90603 -11.31023 -10.76805 -9.51818 -9.03028 -7.93390 -5.45933 0.64458 1.43989 1.44691 1.56440 1.84514 1.98603 2.45938 3.20266 3.45185 3.65369 3.85633 4.11559 4.19761 4.34596 4.57451 4.59568 4.70611 4.81520 4.90943 4.97406 5.09877 5.25302 5.30534 5.36329 5.50219 5.57315 5.65675 6.19691 6.95688 7.03658 7.67663 8.12165 9.09794 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.034104 B = 0.009457 C = 0.008242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.819633 B = 2960.188685 C = 3396.407570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.034 4.034 3 C -0.071 4.071 4 C -0.064 4.064 5 N -0.522 5.522 6 C 0.176 3.824 7 C 0.228 3.772 8 N -0.594 5.594 9 C 0.178 3.822 10 C -0.275 4.275 11 H 0.082 0.918 12 C -0.050 4.050 13 N -0.936 5.936 14 Si 0.976 3.024 15 H -0.260 1.260 16 H -0.285 1.285 17 H -0.294 1.294 18 O -0.219 6.219 19 H 0.091 0.909 20 H 0.062 0.938 21 H 0.044 0.956 22 H 0.077 0.923 23 H 0.115 0.885 24 H 0.202 0.798 25 H 0.091 0.909 26 H 0.109 0.891 27 H -0.005 1.005 28 H 0.030 0.970 29 H 0.037 0.963 30 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.257 -4.256 2.504 12.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.072 4.072 3 C -0.124 4.124 4 C -0.202 4.202 5 N -0.252 5.252 6 C -0.034 4.034 7 C 0.099 3.901 8 N -0.316 5.316 9 C 0.034 3.966 10 C -0.405 4.405 11 H 0.099 0.901 12 C -0.245 4.245 13 N -0.581 5.581 14 Si 0.803 3.197 15 H -0.184 1.184 16 H -0.211 1.211 17 H -0.222 1.222 18 O -0.106 6.106 19 H 0.110 0.890 20 H 0.082 0.918 21 H 0.063 0.937 22 H 0.096 0.904 23 H 0.133 0.867 24 H 0.219 0.781 25 H 0.109 0.891 26 H 0.127 0.873 27 H 0.013 0.987 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.892 -3.760 2.819 11.863 hybrid contribution 0.744 -1.056 -0.731 1.484 sum -10.149 -4.815 2.088 11.426 Atomic orbital electron populations 1.21748 0.92246 1.03637 1.02124 1.20216 0.97539 0.84400 1.05017 1.24245 1.05989 0.97735 0.84473 1.23451 1.05288 0.90155 1.01312 1.70353 1.20352 1.24292 1.10211 1.29062 0.95574 0.87411 0.91369 1.19979 0.84955 0.89621 0.95569 1.44457 1.00755 1.58658 1.27684 1.20611 0.91151 0.92817 0.92060 1.19731 0.97209 1.29311 0.94241 0.90073 1.25978 0.98730 0.99411 1.00403 1.70288 1.09487 1.50553 1.27771 0.85076 0.78343 0.76993 0.79262 1.18424 1.21140 1.22154 1.84432 1.63850 1.24517 1.37753 0.89021 0.91843 0.93660 0.90400 0.86684 0.78110 0.89100 0.87273 0.98680 0.95114 0.94443 0.94026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.89 71.98 0.71 -1.95 16 2 C -0.03 -0.83 6.49 29.85 0.19 -0.64 16 3 C -0.07 -2.55 6.64 24.79 0.16 -2.38 16 4 C -0.06 -2.38 11.80 83.40 0.98 -1.39 16 5 N -0.52 -23.04 11.29 -303.83 -3.43 -26.48 16 6 C 0.18 7.89 7.93 88.34 0.70 8.59 16 7 C 0.23 9.68 6.33 85.63 0.54 10.22 16 8 N -0.59 -30.65 2.91 -731.29 -2.13 -32.78 16 9 C 0.18 9.20 9.01 127.77 1.15 10.35 16 10 C -0.28 -15.24 9.67 84.03 0.81 -14.43 16 11 H 0.08 4.30 7.84 -2.91 -0.02 4.27 16 12 C -0.05 -2.81 5.13 84.86 0.44 -2.37 16 13 N -0.94 -56.57 10.58 21.65 0.23 -56.34 16 14 Si 0.98 45.17 29.57 68.60 2.03 47.20 16 15 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 16 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 17 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 18 O -0.22 -9.60 10.78 -3.74 -0.04 -9.64 16 19 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 20 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 21 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.08 1.92 8.14 -2.39 -0.02 1.91 16 23 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.20 5.75 8.06 -2.91 -0.02 5.73 16 25 H 0.09 3.48 8.03 -2.38 -0.02 3.46 16 26 H 0.11 4.02 7.86 -2.39 -0.02 4.00 16 27 H -0.01 -0.31 7.42 -2.39 -0.02 -0.33 16 28 H 0.03 1.66 7.19 -2.39 -0.02 1.64 16 29 H 0.04 1.64 7.84 -2.39 -0.02 1.62 16 30 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -69.80 262.61 3.47 -66.33 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: 1.12 Total: 5.71 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 5.70 Total: 6.00 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -5.33 Total: -115.60 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.04 Total: -9.64 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -69.80 3.47 -66.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610370189.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.520 kcal (2) G-P(sol) polarization free energy of solvation -69.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds