Wall clock time and date at job start Sun Mar 29 2020 21:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46907 * 110.99393 * 2 1 4 4 C 1.53002 * 109.47177 * 66.04792 * 3 2 1 5 5 C 1.50696 * 109.47142 * 179.97438 * 4 3 2 6 6 H 1.08003 * 120.00081 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00329 * 179.97438 * 5 4 3 8 8 N 1.31505 * 120.00323 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99699 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46923 * 89.99795 * 9 7 5 11 11 H 1.48497 * 109.47082 * 209.99848 * 9 7 5 12 12 H 1.48501 * 109.47153 * 329.99750 * 9 7 5 13 13 C 1.46894 * 111.00042 * 236.04869 * 2 1 3 14 14 C 1.50696 * 109.47041 * 293.94851 * 13 2 1 15 15 N 1.33251 * 125.52599 * 90.00333 * 14 13 2 16 16 C 1.30825 * 109.82850 * 179.97438 * 15 14 13 17 17 N 1.34434 * 108.08133 * 359.97438 * 16 15 14 18 18 H 0.96991 * 126.82624 * 179.73840 * 17 16 15 19 19 N 1.30709 * 125.53091 * 270.00094 * 14 13 2 20 20 H 1.09005 * 109.47122 * 183.95680 * 1 2 3 21 21 H 1.08999 * 109.47406 * 303.95043 * 1 2 3 22 22 H 1.08999 * 109.47633 * 63.95735 * 1 2 3 23 23 H 1.08999 * 109.46794 * 186.04534 * 3 2 1 24 24 H 1.08997 * 109.47236 * 306.04314 * 3 2 1 25 25 H 1.08999 * 109.47047 * 299.99586 * 4 3 2 26 26 H 1.08993 * 109.46965 * 59.99814 * 4 3 2 27 27 H 0.96997 * 120.00705 * 180.02562 * 8 7 5 28 28 H 1.08999 * 109.46916 * 173.94896 * 13 2 1 29 29 H 1.09001 * 109.47542 * 53.95232 * 13 2 1 30 30 H 1.08001 * 125.96388 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3716 0.0000 4 6 1.6313 2.0575 1.3183 5 6 2.1717 3.4642 1.3185 6 1 2.7197 3.8324 0.4637 7 6 1.9658 4.2817 2.4096 8 7 2.4370 5.5095 2.4096 9 14 1.0175 3.6453 3.8877 10 1 1.9606 3.0182 4.8483 11 1 0.3153 4.7744 4.5490 12 1 0.0227 2.6372 3.4411 13 6 1.9954 -0.7659 -1.1376 14 6 1.6370 -2.2203 -0.9728 15 7 0.5276 -2.8008 -1.4287 16 6 0.5303 -4.0709 -1.1151 17 7 1.6634 -4.3317 -0.4403 18 1 1.9399 -5.1874 -0.0769 19 7 2.3639 -3.1170 -0.3596 20 1 -0.3633 -1.0253 0.0709 21 1 -0.3634 0.5739 0.8524 22 1 -0.3634 0.4512 -0.9233 23 1 3.0796 1.3446 -0.1082 24 1 1.5610 1.9274 -0.8309 25 1 0.5470 2.0845 1.4265 26 1 2.0657 1.5017 2.1491 27 1 2.2925 6.0845 3.1772 28 1 3.0797 -0.6609 -1.1756 29 1 1.5611 -0.3872 -2.0628 30 1 -0.2428 -4.7854 -1.3562 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610433168.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:54 Heat of formation + Delta-G solvation = 91.236254 kcal Electronic energy + Delta-G solvation = -13437.991127 eV Core-core repulsion = 11077.405637 eV Total energy + Delta-G solvation = -2360.585490 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.11664 -37.25557 -33.29923 -32.46284 -31.48878 -30.04349 -27.36224 -25.75189 -23.06508 -22.38171 -20.06396 -19.81425 -18.38147 -16.85496 -15.72796 -15.43152 -14.61162 -14.55304 -14.30184 -13.78958 -12.89218 -12.57483 -12.39395 -12.15686 -11.63510 -11.24904 -11.18174 -10.88688 -10.19310 -10.13459 -10.04695 -9.90228 -9.70138 -9.56712 -9.14908 -8.48193 -7.84783 -6.00027 -3.97749 1.56892 2.60447 2.83178 3.36801 3.43282 3.48894 4.05223 4.50740 4.60007 4.65327 4.93738 5.34755 5.60790 5.64198 5.83764 5.97896 6.17793 6.24223 6.34609 6.37874 6.45387 6.80900 6.93736 7.18344 7.33673 7.60130 7.64711 7.89015 8.05958 8.57536 9.04313 9.62795 11.13370 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.060004 B = 0.006195 C = 0.005998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.522726 B = 4518.434853 C = 4667.172320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.541 5.541 3 C 0.072 3.928 4 C -0.008 4.008 5 C -0.520 4.520 6 H 0.072 0.928 7 C 0.068 3.932 8 N -0.905 5.905 9 Si 0.881 3.119 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.143 3.857 14 C 0.245 3.755 15 N -0.540 5.540 16 C 0.254 3.746 17 N -0.490 5.490 18 H 0.439 0.561 19 N -0.299 5.299 20 H 0.060 0.940 21 H 0.072 0.928 22 H 0.025 0.975 23 H 0.069 0.931 24 H 0.031 0.969 25 H 0.017 0.983 26 H 0.020 0.980 27 H 0.263 0.737 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.209 -19.626 -6.571 21.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.266 5.266 3 C -0.054 4.054 4 C -0.045 4.045 5 C -0.558 4.558 6 H 0.090 0.910 7 C -0.133 4.133 8 N -0.544 5.544 9 Si 0.708 3.292 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.013 3.987 14 C -0.038 4.038 15 N -0.269 5.269 16 C -0.045 4.045 17 N -0.208 5.208 18 H 0.284 0.716 19 N -0.128 5.128 20 H 0.078 0.922 21 H 0.091 0.909 22 H 0.044 0.956 23 H 0.088 0.912 24 H 0.049 0.951 25 H 0.035 0.965 26 H 0.039 0.961 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.078 0.922 30 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -3.615 -19.297 -5.912 20.503 hybrid contribution -0.804 -0.702 0.345 1.121 sum -4.418 -19.998 -5.567 21.224 Atomic orbital electron populations 1.22395 0.87439 1.01407 1.00878 1.62040 1.08255 1.16077 1.40234 1.22166 0.99246 0.84261 0.99765 1.19581 0.96645 0.95547 0.92764 1.21084 1.35431 0.95487 1.03832 0.91027 1.24977 0.95308 0.94668 0.98359 1.69908 1.46396 1.07191 1.30880 0.86761 0.80809 0.78516 0.83106 1.20271 1.21520 1.18989 1.20314 1.01084 0.83412 0.93910 1.24251 0.88547 0.97400 0.93644 1.70446 1.23541 1.05523 1.27384 1.26051 0.90949 0.94683 0.92864 1.48180 1.16853 1.11215 1.44583 0.71584 1.78089 1.20179 0.90499 1.24043 0.92166 0.90896 0.95627 0.91222 0.95091 0.96486 0.96136 0.92762 0.88578 0.92172 0.76416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.17 60.06 0.55 1.03 16 2 N -0.54 -10.05 4.75 -244.37 -1.16 -11.21 16 3 C 0.07 1.50 4.90 -3.82 -0.02 1.48 16 4 C -0.01 -0.19 3.97 -27.88 -0.11 -0.30 16 5 C -0.52 -15.07 9.66 -34.44 -0.33 -15.41 16 6 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 7 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 8 N -0.90 -28.29 13.96 55.43 0.77 -27.52 16 9 Si 0.88 22.35 27.47 -169.99 -4.67 17.68 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 12 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 13 C 0.14 2.27 5.59 -4.98 -0.03 2.24 16 14 C 0.24 3.76 6.76 -156.85 -1.06 2.70 16 15 N -0.54 -7.41 10.45 -11.98 -0.13 -7.54 16 16 C 0.25 2.34 13.13 -90.65 -1.19 1.15 16 17 N -0.49 -4.76 7.45 29.53 0.22 -4.54 16 18 H 0.44 2.45 8.96 -182.34 -1.63 0.81 16 19 N -0.30 -4.43 12.80 32.42 0.41 -4.01 16 20 H 0.06 1.01 6.72 -51.93 -0.35 0.66 16 21 H 0.07 1.36 6.30 -51.93 -0.33 1.03 16 22 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.07 1.42 7.93 -51.93 -0.41 1.01 16 24 H 0.03 0.64 8.12 -51.93 -0.42 0.21 16 25 H 0.02 0.42 5.53 -51.93 -0.29 0.13 16 26 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 27 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 28 H 0.10 1.44 7.93 -51.93 -0.41 1.02 16 29 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 30 H 0.22 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 255.96 15.07 3.86 3.86 Total: -1.00 -34.93 255.96 -8.07 -42.99 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -5.09 Total: -4.52 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -2.29 Total: -5.19 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.12 Total: -54.82 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.67 Total: 17.68 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -34.93 -8.07 -42.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610433168.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.230 kcal (2) G-P(sol) polarization free energy of solvation -34.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds