Wall clock time and date at job start Sun Mar 29 2020 21:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46907 * 110.99393 * 2 1 4 4 C 1.53002 * 109.47177 * 66.04792 * 3 2 1 5 5 C 1.50696 * 109.47142 * 179.97438 * 4 3 2 6 6 H 1.08003 * 120.00081 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00329 * 179.97438 * 5 4 3 8 8 N 1.31505 * 120.00323 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99699 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46923 * 89.99795 * 9 7 5 11 11 H 1.48497 * 109.47082 * 209.99848 * 9 7 5 12 12 H 1.48501 * 109.47153 * 329.99750 * 9 7 5 13 13 C 1.46894 * 111.00042 * 236.04869 * 2 1 3 14 14 C 1.50696 * 109.47041 * 293.94851 * 13 2 1 15 15 N 1.33251 * 125.52599 * 90.00333 * 14 13 2 16 16 C 1.30825 * 109.82850 * 179.97438 * 15 14 13 17 17 N 1.34434 * 108.08133 * 359.97438 * 16 15 14 18 18 H 0.96991 * 126.82624 * 179.73840 * 17 16 15 19 19 N 1.30709 * 125.53091 * 270.00094 * 14 13 2 20 20 H 1.09005 * 109.47122 * 183.95680 * 1 2 3 21 21 H 1.08999 * 109.47406 * 303.95043 * 1 2 3 22 22 H 1.08999 * 109.47633 * 63.95735 * 1 2 3 23 23 H 1.08999 * 109.46794 * 186.04534 * 3 2 1 24 24 H 1.08997 * 109.47236 * 306.04314 * 3 2 1 25 25 H 1.08999 * 109.47047 * 299.99586 * 4 3 2 26 26 H 1.08993 * 109.46965 * 59.99814 * 4 3 2 27 27 H 0.96997 * 120.00705 * 180.02562 * 8 7 5 28 28 H 1.08999 * 109.46916 * 173.94896 * 13 2 1 29 29 H 1.09001 * 109.47542 * 53.95232 * 13 2 1 30 30 H 1.08001 * 125.96388 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3716 0.0000 4 6 1.6313 2.0575 1.3183 5 6 2.1717 3.4642 1.3185 6 1 2.7197 3.8324 0.4637 7 6 1.9658 4.2817 2.4096 8 7 2.4370 5.5095 2.4096 9 14 1.0175 3.6453 3.8877 10 1 1.9606 3.0182 4.8483 11 1 0.3153 4.7744 4.5490 12 1 0.0227 2.6372 3.4411 13 6 1.9954 -0.7659 -1.1376 14 6 1.6370 -2.2203 -0.9728 15 7 0.5276 -2.8008 -1.4287 16 6 0.5303 -4.0709 -1.1151 17 7 1.6634 -4.3317 -0.4403 18 1 1.9399 -5.1874 -0.0769 19 7 2.3639 -3.1170 -0.3596 20 1 -0.3633 -1.0253 0.0709 21 1 -0.3634 0.5739 0.8524 22 1 -0.3634 0.4512 -0.9233 23 1 3.0796 1.3446 -0.1082 24 1 1.5610 1.9274 -0.8309 25 1 0.5470 2.0845 1.4265 26 1 2.0657 1.5017 2.1491 27 1 2.2925 6.0845 3.1772 28 1 3.0797 -0.6609 -1.1756 29 1 1.5611 -0.3872 -2.0628 30 1 -0.2428 -4.7854 -1.3562 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610433168.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:53 Heat of formation + Delta-G solvation = 65.328247 kcal Electronic energy + Delta-G solvation = -13439.114582 eV Core-core repulsion = 11077.405637 eV Total energy + Delta-G solvation = -2361.708945 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.01901 -38.72512 -35.21983 -33.73604 -32.60431 -31.76146 -28.63480 -27.50787 -24.54322 -23.45888 -21.64622 -21.09788 -19.20924 -18.99869 -16.95613 -16.54235 -16.38754 -15.86264 -15.54232 -15.42088 -14.63860 -14.50578 -13.75892 -13.39238 -13.07708 -12.91572 -12.68143 -12.60591 -11.96473 -11.79976 -11.63450 -11.32994 -11.05006 -11.02500 -10.74972 -10.68187 -9.29728 -8.28445 -6.32010 0.70509 1.37388 1.37853 1.50879 1.83429 1.90767 2.37450 3.05496 3.07263 3.38487 3.69964 4.19958 4.27753 4.38648 4.50285 4.54556 4.70890 4.78427 4.94336 5.05233 5.27080 5.31712 5.36271 5.47764 5.63316 6.07648 6.10784 6.30873 6.33316 6.75339 7.16199 7.32566 8.88185 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.060004 B = 0.006195 C = 0.005998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.522726 B = 4518.434853 C = 4667.172320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.549 5.549 3 C 0.084 3.916 4 C -0.001 4.001 5 C -0.531 4.531 6 H 0.037 0.963 7 C 0.009 3.991 8 N -0.950 5.950 9 Si 0.949 3.051 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.250 1.250 13 C 0.145 3.855 14 C 0.229 3.771 15 N -0.575 5.575 16 C 0.274 3.726 17 N -0.477 5.477 18 H 0.457 0.543 19 N -0.336 5.336 20 H 0.069 0.931 21 H 0.059 0.941 22 H 0.031 0.969 23 H 0.068 0.932 24 H 0.029 0.971 25 H 0.020 0.980 26 H 0.016 0.984 27 H 0.267 0.733 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.624 -22.247 -6.253 23.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.275 5.275 3 C -0.043 4.043 4 C -0.039 4.039 5 C -0.569 4.569 6 H 0.055 0.945 7 C -0.188 4.188 8 N -0.590 5.590 9 Si 0.773 3.227 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.174 1.174 13 C 0.015 3.985 14 C -0.054 4.054 15 N -0.305 5.305 16 C -0.023 4.023 17 N -0.197 5.197 18 H 0.306 0.694 19 N -0.166 5.166 20 H 0.088 0.912 21 H 0.078 0.922 22 H 0.050 0.950 23 H 0.087 0.913 24 H 0.047 0.953 25 H 0.039 0.961 26 H 0.035 0.965 27 H 0.076 0.924 28 H 0.116 0.884 29 H 0.085 0.915 30 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -5.024 -21.970 -5.601 23.223 hybrid contribution -0.339 0.024 0.162 0.377 sum -5.363 -21.946 -5.440 23.238 Atomic orbital electron populations 1.22325 0.86774 1.01768 1.00548 1.61928 1.08916 1.14497 1.42130 1.21861 0.99288 0.85630 0.97545 1.19450 0.96373 0.93279 0.94753 1.21401 1.35007 0.97708 1.02798 0.94491 1.25912 0.96401 0.94759 1.01733 1.70047 1.48084 1.08715 1.32179 0.85677 0.79681 0.78381 0.79011 1.19433 1.20728 1.17389 1.20261 1.01158 0.84057 0.93036 1.24008 0.89576 0.97081 0.94755 1.70405 1.23530 1.07644 1.28911 1.27068 0.90973 0.94096 0.90206 1.48086 1.16613 1.10745 1.44218 0.69382 1.77965 1.21694 0.92153 1.24820 0.91235 0.92205 0.95010 0.91338 0.95256 0.96142 0.96521 0.92433 0.88422 0.91453 0.70947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.14 9.17 127.69 1.17 2.31 16 2 N -0.55 -19.93 4.75 -927.05 -4.41 -24.33 16 3 C 0.08 3.48 4.90 86.30 0.42 3.90 16 4 C 0.00 -0.04 3.97 29.85 0.12 0.08 16 5 C -0.53 -31.34 9.66 25.60 0.25 -31.10 16 6 H 0.04 2.37 7.99 -2.91 -0.02 2.34 16 7 C 0.01 0.53 5.47 84.66 0.46 1.00 16 8 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 9 Si 0.95 45.80 27.47 68.60 1.88 47.68 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 13 C 0.14 4.47 5.59 85.56 0.48 4.95 16 14 C 0.23 6.70 6.76 138.63 0.94 7.64 16 15 N -0.58 -14.36 10.45 -191.80 -2.01 -16.37 16 16 C 0.27 4.03 13.13 180.36 2.37 6.40 16 17 N -0.48 -7.85 7.45 -60.49 -0.45 -8.30 16 18 H 0.46 3.63 8.96 -213.11 -1.91 1.72 16 19 N -0.34 -9.40 12.80 -51.33 -0.66 -10.05 16 20 H 0.07 2.21 6.72 -2.38 -0.02 2.19 16 21 H 0.06 2.14 6.30 -2.39 -0.02 2.13 16 22 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.07 2.82 7.93 -2.39 -0.02 2.80 16 24 H 0.03 1.21 8.12 -2.39 -0.02 1.19 16 25 H 0.02 0.99 5.53 -2.39 -0.01 0.98 16 26 H 0.02 0.82 7.57 -2.39 -0.02 0.81 16 27 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 28 H 0.10 2.90 7.93 -2.39 -0.02 2.88 16 29 H 0.07 1.95 8.12 -2.39 -0.02 1.93 16 30 H 0.28 0.47 8.06 -2.91 -0.02 0.44 16 Total: -1.00 -76.04 255.96 0.05 -75.99 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -0.82 Total: 0.35 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 6.21 Total: -4.81 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -7.22 Total: -119.22 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.88 Total: 47.68 kcal Total: -76.04 0.05 -75.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610433168.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.320 kcal (2) G-P(sol) polarization free energy of solvation -76.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds