Wall clock time and date at job start Sun Mar 29 2020 21:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35452 * 126.77391 * 2 1 4 4 C 1.41384 * 103.98360 * 180.09975 * 3 2 1 5 5 C 1.50694 * 126.80263 * 179.88894 * 4 3 2 6 6 N 1.46905 * 109.47033 * 94.70833 * 5 4 3 7 7 C 1.46900 * 110.99850 * 293.95020 * 6 5 4 8 8 C 1.46906 * 111.00051 * 170.00053 * 6 5 4 9 9 C 1.50699 * 109.47140 * 189.99841 * 8 6 5 10 10 H 1.08003 * 119.99962 * 359.97438 * 9 8 6 11 11 C 1.37873 * 119.99861 * 180.02562 * 9 8 6 12 12 N 1.31522 * 120.00244 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99980 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47229 * 89.99965 * 13 11 9 15 15 H 1.48500 * 109.46876 * 209.99805 * 13 11 9 16 16 H 1.48499 * 109.47161 * 329.99530 * 13 11 9 17 17 N 1.30181 * 106.39437 * 359.62205 * 4 3 2 18 18 O 1.20917 * 111.60225 * 0.24576 * 17 4 3 19 19 H 1.08996 * 109.47124 * 180.30079 * 1 2 3 20 20 H 1.08999 * 109.47185 * 300.30100 * 1 2 3 21 21 H 1.08998 * 109.46957 * 60.30002 * 1 2 3 22 22 H 1.07996 * 128.01276 * 359.96121 * 3 2 1 23 23 H 1.08997 * 109.47644 * 334.70954 * 5 4 3 24 24 H 1.09000 * 109.47199 * 214.70231 * 5 4 3 25 25 H 1.08996 * 109.47030 * 296.04770 * 7 6 5 26 26 H 1.08999 * 109.46702 * 56.04909 * 7 6 5 27 27 H 1.08996 * 109.46890 * 176.04778 * 7 6 5 28 28 H 1.09004 * 109.47040 * 309.99779 * 8 6 5 29 29 H 1.09000 * 109.47033 * 69.99731 * 8 6 5 30 30 H 0.96992 * 120.00038 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5373 -0.0024 5 6 4.9210 1.3000 -0.0057 6 7 5.4038 1.4509 1.3735 7 6 4.5002 2.3036 2.1572 8 6 6.7755 1.9763 1.3966 9 6 7.3239 1.8874 2.7975 10 1 6.7143 1.4817 3.5913 11 6 8.6035 2.3251 3.0659 12 7 9.3457 2.8197 2.0993 13 14 9.2835 2.2143 4.8022 14 1 9.9594 0.9050 4.9865 15 1 10.2605 3.3109 5.0220 16 1 8.1714 2.3391 5.7783 17 7 3.4764 -0.7564 0.0047 18 8 2.3095 -1.0736 0.0061 19 1 -0.3633 -1.0276 0.0054 20 1 -0.3633 0.5185 0.8873 21 1 -0.3633 0.5092 -0.8926 22 1 2.0345 2.1271 -0.0006 23 1 4.7633 2.2850 -0.4451 24 1 5.6608 0.7549 -0.5920 25 1 4.4962 3.3100 1.7386 26 1 3.4916 1.8918 2.1233 27 1 4.8425 2.3417 3.1913 28 1 7.4008 1.3893 0.7237 29 1 6.7714 3.0172 1.0734 30 1 10.2457 3.1279 2.2882 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610656458.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:21 Heat of formation + Delta-G solvation = 61.289748 kcal Electronic energy + Delta-G solvation = -13549.561967 eV Core-core repulsion = 11155.385148 eV Total energy + Delta-G solvation = -2394.176819 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.65775 -36.88051 -33.88610 -33.14992 -32.24803 -27.86511 -27.65300 -26.90380 -24.10523 -22.74812 -20.87021 -19.36171 -17.39252 -16.98766 -16.31481 -14.94458 -14.60203 -14.24829 -14.00729 -13.58783 -13.35647 -13.33961 -12.48408 -12.14326 -11.94487 -11.59628 -11.22777 -10.93322 -10.80657 -10.59286 -10.51647 -9.94887 -9.75571 -9.26207 -9.09595 -8.43375 -7.30350 -6.02876 -4.04158 1.68080 2.51273 3.31003 3.33295 3.38867 3.42722 4.42334 4.52920 4.60614 5.07437 5.16724 5.25691 5.32235 5.34914 5.44491 5.66628 5.79097 6.00343 6.07790 6.14782 6.30425 6.34196 6.71507 7.23922 7.28965 7.77742 8.04518 8.15735 8.50626 8.60807 9.02903 9.59926 11.08152 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.065651 B = 0.006177 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.393584 B = 4531.638424 C = 4608.292460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.049 4.049 3 C -0.230 4.230 4 C 0.042 3.958 5 C 0.127 3.873 6 N -0.534 5.534 7 C 0.038 3.962 8 C 0.193 3.807 9 C -0.507 4.507 10 H 0.063 0.937 11 C 0.055 3.945 12 N -0.899 5.899 13 Si 0.900 3.100 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.274 1.274 17 N -0.352 5.352 18 O 0.095 5.905 19 H 0.079 0.921 20 H 0.086 0.914 21 H 0.086 0.914 22 H 0.166 0.834 23 H 0.047 0.953 24 H 0.086 0.914 25 H 0.014 0.986 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.032 0.968 29 H -0.006 1.006 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.259 -1.986 -4.530 16.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.112 4.112 3 C -0.252 4.252 4 C -0.118 4.118 5 C -0.002 4.002 6 N -0.260 5.260 7 C -0.111 4.111 8 C 0.069 3.931 9 C -0.545 4.545 10 H 0.081 0.919 11 C -0.146 4.146 12 N -0.539 5.539 13 Si 0.727 3.273 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.199 1.199 17 N -0.056 5.056 18 O 0.028 5.972 19 H 0.098 0.902 20 H 0.105 0.895 21 H 0.104 0.896 22 H 0.183 0.817 23 H 0.065 0.935 24 H 0.104 0.896 25 H 0.032 0.968 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.050 0.950 29 H 0.012 0.988 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.199 -3.403 -4.344 16.170 hybrid contribution 0.176 1.638 0.540 1.734 sum -15.023 -1.765 -3.804 15.597 Atomic orbital electron populations 1.20259 0.84476 1.04276 1.03715 1.24410 0.96181 0.86630 1.03997 1.22410 0.91752 1.00718 1.10291 1.23635 0.97212 0.89784 1.01174 1.20365 0.89972 0.96497 0.93415 1.62100 1.04857 1.51056 1.07984 1.22240 0.95305 0.93611 0.99948 1.19779 0.81883 0.93198 0.98289 1.21136 0.98786 1.40472 0.94151 0.91853 1.24984 0.96840 0.95322 0.97439 1.69958 1.09668 1.42345 1.31912 0.86471 0.78754 0.77652 0.84379 1.20576 1.21288 1.19869 1.73857 0.96012 1.16736 1.18957 1.84838 1.11570 1.33168 1.67643 0.90176 0.89499 0.89570 0.81665 0.93507 0.89600 0.96771 0.93742 0.90702 0.95010 0.98814 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.45 36.01 0.38 -0.13 16 2 C -0.05 -0.61 7.49 -35.30 -0.26 -0.87 16 3 C -0.23 -3.22 10.00 -39.38 -0.39 -3.61 16 4 C 0.04 0.74 6.02 -82.10 -0.49 0.25 16 5 C 0.13 2.46 5.55 -4.98 -0.03 2.43 16 6 N -0.53 -12.22 4.74 -245.82 -1.17 -13.39 16 7 C 0.04 0.76 9.18 60.06 0.55 1.31 16 8 C 0.19 5.16 4.72 -4.97 -0.02 5.14 16 9 C -0.51 -14.58 8.52 -34.44 -0.29 -14.88 16 10 H 0.06 1.82 7.10 -52.48 -0.37 1.44 16 11 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 12 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 13 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 N -0.35 -6.57 12.07 33.42 0.40 -6.16 16 18 O 0.09 1.49 11.20 17.19 0.19 1.68 16 19 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 20 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.17 1.90 8.06 -52.49 -0.42 1.47 16 23 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 24 H 0.09 1.70 7.93 -51.93 -0.41 1.29 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.04 0.80 6.34 -51.93 -0.33 0.47 16 27 H 0.07 1.62 6.86 -51.93 -0.36 1.26 16 28 H 0.03 0.90 7.93 -51.93 -0.41 0.49 16 29 H -0.01 -0.17 8.12 -51.93 -0.42 -0.59 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 LS Contribution 260.88 15.07 3.93 3.93 Total: -1.00 -32.21 260.88 -5.56 -37.77 By element: Atomic # 1 Polarization: -1.70 SS G_CDS: -3.97 Total: -5.67 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -0.67 Total: -8.86 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -0.03 Total: -45.81 kcal Atomic # 8 Polarization: 1.49 SS G_CDS: 0.19 Total: 1.68 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.21 -5.56 -37.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610656458.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.062 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds