Wall clock time and date at job start Sun Mar 29 2020 21:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35452 * 126.77391 * 2 1 4 4 C 1.41384 * 103.98360 * 180.09975 * 3 2 1 5 5 C 1.50694 * 126.80263 * 179.88894 * 4 3 2 6 6 N 1.46905 * 109.47033 * 94.70833 * 5 4 3 7 7 C 1.46900 * 110.99850 * 293.95020 * 6 5 4 8 8 C 1.46906 * 111.00051 * 170.00053 * 6 5 4 9 9 C 1.50699 * 109.47140 * 189.99841 * 8 6 5 10 10 H 1.08003 * 119.99962 * 359.97438 * 9 8 6 11 11 C 1.37873 * 119.99861 * 180.02562 * 9 8 6 12 12 N 1.31522 * 120.00244 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99980 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47229 * 89.99965 * 13 11 9 15 15 H 1.48500 * 109.46876 * 209.99805 * 13 11 9 16 16 H 1.48499 * 109.47161 * 329.99530 * 13 11 9 17 17 N 1.30181 * 106.39437 * 359.62205 * 4 3 2 18 18 O 1.20917 * 111.60225 * 0.24576 * 17 4 3 19 19 H 1.08996 * 109.47124 * 180.30079 * 1 2 3 20 20 H 1.08999 * 109.47185 * 300.30100 * 1 2 3 21 21 H 1.08998 * 109.46957 * 60.30002 * 1 2 3 22 22 H 1.07996 * 128.01276 * 359.96121 * 3 2 1 23 23 H 1.08997 * 109.47644 * 334.70954 * 5 4 3 24 24 H 1.09000 * 109.47199 * 214.70231 * 5 4 3 25 25 H 1.08996 * 109.47030 * 296.04770 * 7 6 5 26 26 H 1.08999 * 109.46702 * 56.04909 * 7 6 5 27 27 H 1.08996 * 109.46890 * 176.04778 * 7 6 5 28 28 H 1.09004 * 109.47040 * 309.99779 * 8 6 5 29 29 H 1.09000 * 109.47033 * 69.99731 * 8 6 5 30 30 H 0.96992 * 120.00038 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5373 -0.0024 5 6 4.9210 1.3000 -0.0057 6 7 5.4038 1.4509 1.3735 7 6 4.5002 2.3036 2.1572 8 6 6.7755 1.9763 1.3966 9 6 7.3239 1.8874 2.7975 10 1 6.7143 1.4817 3.5913 11 6 8.6035 2.3251 3.0659 12 7 9.3457 2.8197 2.0993 13 14 9.2835 2.2143 4.8022 14 1 9.9594 0.9050 4.9865 15 1 10.2605 3.3109 5.0220 16 1 8.1714 2.3391 5.7783 17 7 3.4764 -0.7564 0.0047 18 8 2.3095 -1.0736 0.0061 19 1 -0.3633 -1.0276 0.0054 20 1 -0.3633 0.5185 0.8873 21 1 -0.3633 0.5092 -0.8926 22 1 2.0345 2.1271 -0.0006 23 1 4.7633 2.2850 -0.4451 24 1 5.6608 0.7549 -0.5920 25 1 4.4962 3.3100 1.7386 26 1 3.4916 1.8918 2.1233 27 1 4.8425 2.3417 3.1913 28 1 7.4008 1.3893 0.7237 29 1 6.7714 3.0172 1.0734 30 1 10.2457 3.1279 2.2882 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610656458.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:21 Heat of formation + Delta-G solvation = 38.724880 kcal Electronic energy + Delta-G solvation = -13550.540453 eV Core-core repulsion = 11155.385148 eV Total energy + Delta-G solvation = -2395.155305 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.89300 -38.61131 -35.34852 -34.48137 -33.96099 -29.71201 -28.64943 -28.53311 -26.00762 -24.00348 -22.70534 -20.66890 -18.65987 -18.56616 -18.07399 -16.85103 -16.16881 -15.84469 -15.73878 -14.82539 -14.53090 -14.02357 -13.90237 -13.66332 -13.41368 -13.11337 -13.04803 -12.74540 -12.62106 -12.35808 -12.07802 -11.80011 -11.42356 -11.06297 -10.64074 -10.18420 -9.12850 -8.23591 -6.34134 0.61383 1.25498 1.39790 1.41858 1.52827 2.34648 2.39060 3.08935 3.19621 3.35137 3.67098 4.17365 4.26864 4.31006 4.50944 4.55585 4.64148 4.70251 4.80721 4.95592 5.01032 5.03495 5.10707 5.22163 5.32543 5.59870 5.98016 6.23451 6.50033 6.80325 7.35458 7.44298 8.87689 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.065651 B = 0.006177 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.393584 B = 4531.638424 C = 4608.292460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.030 4.030 3 C -0.237 4.237 4 C 0.019 3.981 5 C 0.130 3.870 6 N -0.550 5.550 7 C 0.044 3.956 8 C 0.209 3.791 9 C -0.527 4.527 10 H 0.060 0.940 11 C 0.003 3.997 12 N -0.933 5.933 13 Si 0.972 3.028 14 H -0.275 1.275 15 H -0.278 1.278 16 H -0.264 1.264 17 N -0.392 5.392 18 O 0.091 5.909 19 H 0.093 0.907 20 H 0.106 0.894 21 H 0.111 0.889 22 H 0.192 0.808 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.023 0.977 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.003 0.997 29 H -0.026 1.026 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.397 -1.794 -3.724 18.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.093 4.093 3 C -0.259 4.259 4 C -0.140 4.140 5 C 0.001 3.999 6 N -0.276 5.276 7 C -0.104 4.104 8 C 0.083 3.917 9 C -0.565 4.565 10 H 0.078 0.922 11 C -0.195 4.195 12 N -0.573 5.573 13 Si 0.796 3.204 14 H -0.201 1.201 15 H -0.203 1.203 16 H -0.188 1.188 17 N -0.097 5.097 18 O 0.024 5.976 19 H 0.112 0.888 20 H 0.125 0.875 21 H 0.129 0.871 22 H 0.210 0.790 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.041 0.959 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.021 0.979 29 H -0.008 1.008 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.359 -3.214 -3.546 18.006 hybrid contribution 0.726 1.548 0.217 1.724 sum -16.632 -1.666 -3.329 17.044 Atomic orbital electron populations 1.20574 0.80279 1.05938 1.05766 1.25354 0.98121 0.85047 1.00810 1.22674 0.89959 1.02428 1.10819 1.23530 0.97709 0.89982 1.02752 1.20266 0.90776 0.97501 0.91348 1.61962 1.03638 1.51462 1.10507 1.22190 0.95810 0.93913 0.98454 1.19417 0.84019 0.91474 0.96828 1.21420 0.99400 1.40833 0.94875 0.92178 1.25911 0.97023 0.94589 1.01954 1.70077 1.10128 1.42900 1.34236 0.85350 0.78207 0.77882 0.78973 1.20056 1.20344 1.18827 1.73848 0.97726 1.17518 1.20603 1.84785 1.11094 1.34336 1.67340 0.88797 0.87514 0.87097 0.79041 0.91812 0.91304 0.95893 0.91095 0.92436 0.97928 1.00837 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.45 71.24 0.74 0.06 16 2 C -0.03 -0.66 7.49 25.04 0.19 -0.47 16 3 C -0.24 -6.05 10.00 22.40 0.22 -5.82 16 4 C 0.02 0.65 6.02 43.58 0.26 0.91 16 5 C 0.13 5.12 5.55 85.55 0.48 5.59 16 6 N -0.55 -25.60 4.74 -931.65 -4.42 -30.02 16 7 C 0.04 1.78 9.18 127.69 1.17 2.95 16 8 C 0.21 11.55 4.72 85.56 0.40 11.96 16 9 C -0.53 -30.90 8.52 25.60 0.22 -30.68 16 10 H 0.06 3.49 7.10 -2.91 -0.02 3.47 16 11 C 0.00 0.20 5.46 84.65 0.46 0.66 16 12 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 13 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 14 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 15 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 16 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 17 N -0.39 -14.61 12.07 -49.56 -0.60 -15.21 16 18 O 0.09 2.76 11.20 71.67 0.80 3.56 16 19 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 20 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 21 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 22 H 0.19 3.71 8.06 -2.91 -0.02 3.69 16 23 H 0.06 2.26 8.12 -2.39 -0.02 2.24 16 24 H 0.07 2.87 7.93 -2.39 -0.02 2.86 16 25 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 2.43 6.34 -2.39 -0.02 2.42 16 27 H 0.06 2.47 6.86 -2.39 -0.02 2.46 16 28 H 0.00 0.16 7.93 -2.38 -0.02 0.14 16 29 H -0.03 -1.51 8.12 -2.39 -0.02 -1.53 16 30 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -70.88 260.88 3.36 -67.51 By element: Atomic # 1 Polarization: -2.63 SS G_CDS: 1.12 Total: -1.51 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 4.15 Total: -14.84 kcal Atomic # 7 Polarization: -97.14 SS G_CDS: -4.73 Total: -101.87 kcal Atomic # 8 Polarization: 2.76 SS G_CDS: 0.80 Total: 3.56 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -70.88 3.36 -67.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610656458.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.237 kcal (2) G-P(sol) polarization free energy of solvation -70.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds