Wall clock time and date at job start Sun Mar 29 2020 21:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46509 * 109.47581 * 2 1 4 4 C 1.36926 * 120.00042 * 276.00558 * 3 2 1 5 5 H 1.07998 * 120.00290 * 33.72731 * 4 3 2 6 6 C 1.38816 * 119.99934 * 213.73435 * 4 3 2 7 7 N 1.31624 * 119.99742 * 23.28599 * 6 4 3 8 8 Si 1.86795 * 120.00050 * 203.28939 * 6 4 3 9 9 H 1.48506 * 109.47343 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47235 * 119.99813 * 8 6 4 11 11 H 1.48504 * 109.47168 * 239.99640 * 8 6 4 12 12 C 1.46503 * 119.99643 * 95.99595 * 3 2 1 13 13 C 1.50702 * 109.47349 * 270.00686 * 12 3 2 14 14 N 1.30522 * 126.34128 * 269.96386 * 13 12 3 15 15 N 1.28600 * 109.66882 * 180.02562 * 14 13 12 16 16 C 1.30516 * 109.67411 * 359.71834 * 15 14 13 17 17 N 1.35493 * 126.34768 * 90.00131 * 13 12 3 18 18 C 1.46492 * 126.98104 * 359.96289 * 17 13 12 19 19 H 1.08998 * 109.47522 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47392 * 300.00267 * 1 2 3 21 21 H 1.09000 * 109.47150 * 59.99801 * 1 2 3 22 22 H 1.08998 * 109.47630 * 240.00216 * 2 1 3 23 23 H 1.09000 * 109.47150 * 120.00199 * 2 1 3 24 24 H 0.97005 * 119.99596 * 180.02562 * 7 6 4 25 25 H 1.09002 * 109.46671 * 150.00884 * 12 3 2 26 26 H 1.08996 * 109.47194 * 30.00717 * 12 3 2 27 27 H 1.08000 * 126.35148 * 180.29653 * 16 15 14 28 28 H 1.09009 * 109.47018 * 90.00113 * 18 17 13 29 29 H 1.08997 * 109.47182 * 330.00633 * 18 17 13 30 30 H 1.08997 * 109.47411 * 209.99785 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1297 2.0681 -1.1793 5 1 1.4237 1.8896 -1.9769 6 6 3.1501 2.9937 -1.3498 7 7 4.2466 2.9049 -0.6272 8 14 2.9668 4.3653 -2.6046 9 1 1.6509 4.2440 -3.2820 10 1 3.0512 5.6791 -1.9177 11 1 4.0530 4.2628 -3.6121 12 6 2.3875 2.0276 1.2619 13 6 1.1819 2.7202 1.8431 14 7 0.8152 3.9527 1.6192 15 7 -0.2585 4.2113 2.2780 16 6 -0.6288 3.1538 2.9473 17 7 0.2782 2.1792 2.6954 18 6 0.2781 0.8155 3.2305 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 4.9595 3.5520 -0.7461 25 1 3.1739 2.7598 1.0785 26 1 2.7478 1.2754 1.9636 27 1 -1.4960 3.0715 3.5859 28 1 0.8438 0.7906 4.1620 29 1 0.7382 0.1416 2.5079 30 1 -0.7478 0.4996 3.4200 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685969190.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:20 Heat of formation + Delta-G solvation = 103.130638 kcal Electronic energy + Delta-G solvation = -14484.713971 eV Core-core repulsion = 12124.644261 eV Total energy + Delta-G solvation = -2360.069710 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.27560 -36.20251 -34.32492 -31.93500 -30.83185 -28.78203 -27.10989 -25.95231 -23.71522 -21.57177 -20.89247 -19.80884 -17.06449 -16.35657 -15.58389 -15.06960 -14.48571 -13.95658 -13.70904 -13.43390 -13.20036 -12.71561 -12.14290 -11.96378 -11.37996 -11.18046 -10.77960 -10.68127 -10.56514 -10.29119 -10.07668 -9.93939 -9.52532 -9.50053 -8.53388 -8.36878 -6.78831 -5.86493 -3.39289 2.54894 3.14172 3.45192 3.55977 3.58068 3.72741 4.52959 4.89280 5.06727 5.22683 5.26248 5.44411 5.48455 5.54787 5.81906 5.89325 6.18198 6.19007 6.37031 6.43725 6.64961 6.73115 6.93633 6.99211 7.42387 7.61299 7.80973 8.41420 9.07696 9.59390 9.73576 10.23569 11.17153 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.031018 B = 0.013295 C = 0.010957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.476699 B = 2105.542778 C = 2554.887357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.139 3.861 3 N -0.569 5.569 4 C -0.262 4.262 5 H 0.062 0.938 6 C 0.023 3.977 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.292 1.292 12 C 0.212 3.788 13 C 0.198 3.802 14 N -0.296 5.296 15 N -0.308 5.308 16 C 0.111 3.889 17 N -0.483 5.483 18 C 0.074 3.926 19 H 0.039 0.961 20 H 0.042 0.958 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.035 0.965 24 H 0.258 0.742 25 H 0.134 0.866 26 H 0.044 0.956 27 H 0.203 0.797 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.068 -6.839 7.691 11.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.013 3.987 3 N -0.288 5.288 4 C -0.391 4.391 5 H 0.080 0.920 6 C -0.178 4.178 7 N -0.528 5.528 8 Si 0.731 3.269 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.219 1.219 12 C 0.082 3.918 13 C -0.072 4.072 14 N -0.135 5.135 15 N -0.148 5.148 16 C -0.176 4.176 17 N -0.176 5.176 18 C -0.070 4.070 19 H 0.058 0.942 20 H 0.061 0.939 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.151 0.849 26 H 0.063 0.937 27 H 0.220 0.780 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.891 -5.360 7.108 10.675 hybrid contribution -0.504 -0.607 0.084 0.794 sum -6.395 -5.967 7.192 11.324 Atomic orbital electron populations 1.22452 1.00109 0.99100 1.01631 1.20945 0.91688 0.86880 0.99222 1.43772 1.75130 1.07877 1.02069 1.18959 1.08125 1.19184 0.92813 0.91990 1.25014 0.93839 1.00600 0.98301 1.69897 1.04575 1.35608 1.42745 0.86258 0.77460 0.82786 0.80379 1.20174 1.20814 1.21861 1.19766 0.89572 0.96939 0.85561 1.27426 0.96854 0.91780 0.91166 1.74307 1.07391 1.12733 1.19110 1.74169 1.08690 1.23174 1.08747 1.26111 0.98801 0.86711 1.06000 1.46360 1.21767 1.12653 1.36847 1.22045 1.03670 0.80978 1.00280 0.94202 0.93903 0.92971 0.92905 0.94656 0.93225 0.84875 0.93746 0.77995 0.90818 0.88834 0.90004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 9.78 37.15 0.36 -2.66 16 2 C 0.14 2.71 5.91 -4.04 -0.02 2.68 16 3 N -0.57 -13.67 2.45 -174.61 -0.43 -14.10 16 4 C -0.26 -7.16 9.48 -15.06 -0.14 -7.30 16 5 H 0.06 1.73 7.93 -52.49 -0.42 1.31 16 6 C 0.02 0.64 4.95 -17.43 -0.09 0.56 16 7 N -0.89 -25.13 11.32 55.49 0.63 -24.51 16 8 Si 0.90 22.72 29.61 -169.99 -5.03 17.68 16 9 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 C 0.21 4.88 5.50 -5.19 -0.03 4.85 16 13 C 0.20 4.37 7.48 -154.98 -1.16 3.21 16 14 N -0.30 -7.44 12.21 32.80 0.40 -7.04 16 15 N -0.31 -6.89 12.21 29.69 0.36 -6.52 16 16 C 0.11 1.93 12.74 -89.95 -1.15 0.78 16 17 N -0.48 -8.33 2.68 -122.69 -0.33 -8.66 16 18 C 0.07 0.87 9.65 59.84 0.58 1.45 16 19 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 20 H 0.04 0.73 5.35 -51.93 -0.28 0.45 16 21 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 22 H 0.05 1.06 8.09 -51.93 -0.42 0.64 16 23 H 0.04 0.60 6.97 -51.93 -0.36 0.24 16 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.13 3.58 5.31 -51.93 -0.28 3.30 16 26 H 0.04 0.90 7.57 -51.93 -0.39 0.50 16 27 H 0.20 2.41 8.06 -52.49 -0.42 1.98 16 28 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 29 H 0.09 1.17 5.11 -51.93 -0.27 0.90 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 252.56 15.07 3.81 3.81 Total: -1.00 -32.72 252.56 -5.90 -38.61 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -3.66 Total: -2.85 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -1.65 Total: 3.57 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: 0.63 Total: -60.83 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.03 Total: 17.68 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -32.72 -5.90 -38.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685969190.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.743 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds