Wall clock time and date at job start Sun Mar 29 2020 21:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46509 * 109.47581 * 2 1 4 4 C 1.36926 * 120.00042 * 276.00558 * 3 2 1 5 5 H 1.07998 * 120.00290 * 33.72731 * 4 3 2 6 6 C 1.38816 * 119.99934 * 213.73435 * 4 3 2 7 7 N 1.31624 * 119.99742 * 23.28599 * 6 4 3 8 8 Si 1.86795 * 120.00050 * 203.28939 * 6 4 3 9 9 H 1.48506 * 109.47343 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47235 * 119.99813 * 8 6 4 11 11 H 1.48504 * 109.47168 * 239.99640 * 8 6 4 12 12 C 1.46503 * 119.99643 * 95.99595 * 3 2 1 13 13 C 1.50702 * 109.47349 * 270.00686 * 12 3 2 14 14 N 1.30522 * 126.34128 * 269.96386 * 13 12 3 15 15 N 1.28600 * 109.66882 * 180.02562 * 14 13 12 16 16 C 1.30516 * 109.67411 * 359.71834 * 15 14 13 17 17 N 1.35493 * 126.34768 * 90.00131 * 13 12 3 18 18 C 1.46492 * 126.98104 * 359.96289 * 17 13 12 19 19 H 1.08998 * 109.47522 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47392 * 300.00267 * 1 2 3 21 21 H 1.09000 * 109.47150 * 59.99801 * 1 2 3 22 22 H 1.08998 * 109.47630 * 240.00216 * 2 1 3 23 23 H 1.09000 * 109.47150 * 120.00199 * 2 1 3 24 24 H 0.97005 * 119.99596 * 180.02562 * 7 6 4 25 25 H 1.09002 * 109.46671 * 150.00884 * 12 3 2 26 26 H 1.08996 * 109.47194 * 30.00717 * 12 3 2 27 27 H 1.08000 * 126.35148 * 180.29653 * 16 15 14 28 28 H 1.09009 * 109.47018 * 90.00113 * 18 17 13 29 29 H 1.08997 * 109.47182 * 330.00633 * 18 17 13 30 30 H 1.08997 * 109.47411 * 209.99785 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1297 2.0681 -1.1793 5 1 1.4237 1.8896 -1.9769 6 6 3.1501 2.9937 -1.3498 7 7 4.2466 2.9049 -0.6272 8 14 2.9668 4.3653 -2.6046 9 1 1.6509 4.2440 -3.2820 10 1 3.0512 5.6791 -1.9177 11 1 4.0530 4.2628 -3.6121 12 6 2.3875 2.0276 1.2619 13 6 1.1819 2.7202 1.8431 14 7 0.8152 3.9527 1.6192 15 7 -0.2585 4.2113 2.2780 16 6 -0.6288 3.1538 2.9473 17 7 0.2782 2.1792 2.6954 18 6 0.2781 0.8155 3.2305 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 4.9595 3.5520 -0.7461 25 1 3.1739 2.7598 1.0785 26 1 2.7478 1.2754 1.9636 27 1 -1.4960 3.0715 3.5859 28 1 0.8438 0.7906 4.1620 29 1 0.7382 0.1416 2.5079 30 1 -0.7478 0.4996 3.4200 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685969190.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:19 Heat of formation + Delta-G solvation = 82.796313 kcal Electronic energy + Delta-G solvation = -14485.595734 eV Core-core repulsion = 12124.644261 eV Total energy + Delta-G solvation = -2360.951473 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.78672 -37.96387 -35.71554 -33.83788 -32.46076 -30.44519 -28.30419 -27.74339 -25.47739 -23.02645 -22.49439 -21.44879 -18.88240 -17.75634 -17.05821 -16.94853 -15.99590 -15.61836 -15.44062 -15.07222 -14.61074 -13.93947 -13.56136 -13.39519 -13.11520 -12.94686 -12.67013 -12.41340 -12.28011 -12.20291 -11.92521 -11.63857 -11.06054 -10.86481 -10.54973 -10.00888 -8.73698 -7.92629 -5.46990 1.11339 1.40246 1.49724 1.53794 1.87593 2.12892 2.49857 3.22864 3.69032 3.79078 3.98375 4.01284 4.30620 4.36554 4.43805 4.66105 4.71805 4.79684 4.96665 4.98752 5.10961 5.22432 5.41106 5.53303 5.58061 5.67278 6.23762 6.41847 7.08839 7.77905 8.04693 8.24119 9.06651 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.031018 B = 0.013295 C = 0.010957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.476699 B = 2105.542778 C = 2554.887357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.134 3.866 3 N -0.584 5.584 4 C -0.263 4.263 5 H 0.048 0.952 6 C -0.018 4.018 7 N -0.906 5.906 8 Si 0.943 3.057 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.281 1.281 12 C 0.218 3.782 13 C 0.185 3.815 14 N -0.355 5.355 15 N -0.361 5.361 16 C 0.144 3.856 17 N -0.474 5.474 18 C 0.063 3.937 19 H 0.078 0.922 20 H 0.047 0.953 21 H 0.020 0.980 22 H 0.041 0.959 23 H 0.067 0.933 24 H 0.255 0.745 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.261 0.739 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.724 -8.743 9.403 14.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.010 3.990 3 N -0.304 5.304 4 C -0.394 4.394 5 H 0.066 0.934 6 C -0.216 4.216 7 N -0.550 5.550 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.223 1.223 11 H -0.208 1.208 12 C 0.088 3.912 13 C -0.087 4.087 14 N -0.194 5.194 15 N -0.200 5.200 16 C -0.145 4.145 17 N -0.165 5.165 18 C -0.078 4.078 19 H 0.096 0.904 20 H 0.066 0.934 21 H 0.039 0.961 22 H 0.060 0.940 23 H 0.086 0.914 24 H 0.064 0.936 25 H 0.110 0.890 26 H 0.090 0.910 27 H 0.277 0.723 28 H 0.118 0.882 29 H 0.106 0.894 30 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.561 -7.307 8.829 13.730 hybrid contribution -0.093 -0.108 -0.321 0.351 sum -7.654 -7.415 8.508 13.636 Atomic orbital electron populations 1.22287 0.98178 1.01133 1.00279 1.21120 0.93023 0.84636 1.00253 1.43921 1.75552 1.09597 1.01356 1.19016 1.07116 1.19480 0.93742 0.93406 1.25475 0.94086 1.02155 0.99924 1.69976 1.04960 1.36088 1.43968 0.85607 0.77466 0.80491 0.79195 1.20314 1.22329 1.20757 1.19437 0.89224 0.96608 0.85886 1.26867 0.97558 0.91523 0.92794 1.74180 1.09198 1.14898 1.21174 1.74044 1.09016 1.25953 1.10954 1.27108 0.98735 0.85032 1.03652 1.46508 1.20153 1.14529 1.35340 1.22506 1.06784 0.77685 1.00844 0.90365 0.93413 0.96100 0.94013 0.91430 0.93597 0.88975 0.91012 0.72337 0.88242 0.89379 0.86061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.12 9.78 71.98 0.70 -4.41 16 2 C 0.13 4.98 5.91 86.37 0.51 5.49 16 3 N -0.58 -27.85 2.45 -706.34 -1.73 -29.58 16 4 C -0.26 -14.65 9.48 84.04 0.80 -13.85 16 5 H 0.05 2.74 7.93 -2.91 -0.02 2.71 16 6 C -0.02 -1.03 4.95 84.86 0.42 -0.61 16 7 N -0.91 -52.73 11.32 21.65 0.25 -52.49 16 8 Si 0.94 47.88 29.61 68.60 2.03 49.91 16 9 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 10 H -0.30 -15.58 7.11 99.48 0.71 -14.88 16 11 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 12 C 0.22 10.00 5.50 85.63 0.47 10.48 16 13 C 0.18 8.00 7.48 137.98 1.03 9.03 16 14 N -0.35 -18.01 12.21 -50.15 -0.61 -18.62 16 15 N -0.36 -15.81 12.21 -59.99 -0.73 -16.54 16 16 C 0.14 4.45 12.74 180.11 2.30 6.75 16 17 N -0.47 -14.75 2.68 -542.08 -1.45 -16.20 16 18 C 0.06 1.15 9.65 127.77 1.23 2.38 16 19 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 20 H 0.05 1.47 5.35 -2.39 -0.01 1.45 16 21 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 22 H 0.04 1.62 8.09 -2.39 -0.02 1.60 16 23 H 0.07 2.06 6.97 -2.39 -0.02 2.05 16 24 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 25 H 0.09 5.08 5.31 -2.39 -0.01 5.07 16 26 H 0.07 2.78 7.57 -2.39 -0.02 2.76 16 27 H 0.26 4.61 8.06 -2.91 -0.02 4.58 16 28 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.09 1.77 5.11 -2.39 -0.01 1.75 16 30 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -74.79 252.56 6.34 -68.44 By element: Atomic # 1 Polarization: -1.31 SS G_CDS: 1.13 Total: -0.18 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 7.46 Total: 15.25 kcal Atomic # 7 Polarization: -129.14 SS G_CDS: -4.28 Total: -133.43 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.91 kcal Total: -74.79 6.34 -68.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685969190.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.240 kcal (2) G-P(sol) polarization free energy of solvation -74.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds