Wall clock time and date at job start Sun Mar 29 2020 21:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46070 * 110.96646 * 2 1 4 4 C 1.54929 * 110.79704 * 223.32618 * 3 2 1 5 5 C 1.53830 * 108.15636 * 302.02430 * 4 3 2 6 6 H 1.08997 * 109.68960 * 211.65596 * 5 4 3 7 7 C 1.53137 * 108.82156 * 91.64001 * 5 4 3 8 8 C 1.53871 * 105.15145 * 240.71667 * 7 5 4 9 9 C 1.52921 * 104.20207 * 16.75884 * 8 7 5 10 10 H 1.08999 * 109.88446 * 211.74659 * 9 8 7 11 11 C 1.47194 * 111.00132 * 124.61848 * 2 1 3 12 12 N 1.47356 * 109.19230 * 331.66278 * 5 4 3 13 13 C 1.36941 * 127.53458 * 281.68938 * 12 5 4 14 14 H 1.07997 * 119.99935 * 0.02562 * 13 12 5 15 15 C 1.38815 * 119.99867 * 180.02562 * 13 12 5 16 16 N 1.31620 * 120.00029 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99839 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47315 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47470 * 120.00044 * 17 15 13 20 20 H 1.48509 * 109.47157 * 240.00031 * 17 15 13 21 21 H 1.08999 * 109.47126 * 295.38363 * 1 2 3 22 22 H 1.08998 * 109.46866 * 55.38294 * 1 2 3 23 23 H 1.08995 * 109.46903 * 175.38286 * 1 2 3 24 24 H 1.08998 * 109.16890 * 103.01873 * 3 2 1 25 25 H 1.08997 * 109.25785 * 343.69679 * 3 2 1 26 26 H 1.09002 * 109.73433 * 182.34364 * 4 3 2 27 27 H 1.09002 * 109.73168 * 61.70192 * 4 3 2 28 28 H 1.09003 * 110.30730 * 359.63212 * 7 5 4 29 29 H 1.09001 * 110.30503 * 121.79659 * 7 5 4 30 30 H 1.08999 * 110.48480 * 135.43498 * 8 7 5 31 31 H 1.09002 * 110.48636 * 258.08047 * 8 7 5 32 32 H 1.08996 * 108.88047 * 46.46816 * 11 2 1 33 33 H 1.08998 * 108.80157 * 287.95850 * 11 2 1 34 34 H 0.97001 * 119.99868 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9917 1.3640 0.0000 4 6 3.1724 1.5007 -0.9938 5 6 4.2594 0.4904 -0.5886 6 1 5.2426 0.8891 -0.8380 7 6 4.0252 -0.8185 -1.3482 8 6 3.7899 -1.8793 -0.2587 9 6 3.4792 -1.0644 0.9974 10 1 3.8361 -1.5940 1.8807 11 6 1.9965 -0.7807 1.1309 12 7 4.1798 0.2494 0.8630 13 6 4.6459 1.0532 1.8689 14 1 5.1376 1.9850 1.6316 15 6 4.4864 0.6702 3.1936 16 7 3.8876 -0.4656 3.4828 17 14 5.1216 1.7670 4.5658 18 1 5.7500 2.9785 3.9805 19 1 3.9915 2.1699 5.4409 20 1 6.1279 1.0248 5.3671 21 1 -0.3633 0.4405 0.9284 22 1 -0.3633 0.5838 -0.8457 23 1 -0.3633 -1.0243 -0.0827 24 1 2.3363 1.6152 1.0031 25 1 1.1981 2.0531 -0.2889 26 1 3.5754 2.5125 -0.9496 27 1 2.8286 1.2854 -2.0055 28 1 3.1471 -0.7325 -1.9883 29 1 4.9033 -1.0738 -1.9415 30 1 2.9434 -2.5139 -0.5207 31 1 4.6873 -2.4802 -0.1112 32 1 1.4598 -1.7277 1.1866 33 1 1.8254 -0.2240 2.0522 34 1 3.7765 -0.7334 4.4085 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718919075.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:23 Heat of formation + Delta-G solvation = 39.786646 kcal Electronic energy + Delta-G solvation = -15394.236614 eV Core-core repulsion = 13134.960446 eV Total energy + Delta-G solvation = -2259.276169 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.88694 -34.90248 -32.63038 -31.65792 -29.14982 -27.61398 -25.09659 -24.20094 -23.37556 -20.33202 -19.09316 -18.56340 -16.64787 -15.24540 -14.60775 -14.20761 -14.00340 -13.45786 -13.08079 -12.79003 -12.58835 -12.03516 -11.69689 -11.23046 -11.07965 -11.03948 -10.80218 -10.65888 -10.30839 -10.15189 -9.91384 -9.64999 -9.39286 -9.32766 -9.21074 -8.64563 -7.28174 -6.74573 -5.63247 -3.02721 3.39660 3.46160 3.47800 4.50644 4.88127 5.47320 5.49244 5.74704 5.78278 5.87374 5.96812 6.05669 6.14484 6.23132 6.29037 6.35543 6.46454 6.60872 6.69813 6.76579 6.83073 6.95081 7.03281 7.13489 7.18199 7.30891 7.52440 7.71877 7.77538 8.09146 8.16365 8.41763 9.23862 9.85710 10.61458 11.41709 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.033544 B = 0.013415 C = 0.012717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.513868 B = 2086.670624 C = 2201.318280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.543 5.543 3 C 0.071 3.929 4 C -0.123 4.123 5 C 0.159 3.841 6 H 0.032 0.968 7 C -0.111 4.111 8 C -0.122 4.122 9 C 0.163 3.837 10 H 0.121 0.879 11 C 0.067 3.933 12 N -0.589 5.589 13 C -0.204 4.204 14 H 0.077 0.923 15 C -0.015 4.015 16 N -0.921 5.921 17 Si 0.910 3.090 18 H -0.281 1.281 19 H -0.293 1.293 20 H -0.292 1.292 21 H 0.013 0.987 22 H 0.053 0.947 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.030 0.970 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.038 0.962 33 H 0.047 0.953 34 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.599 -0.225 -6.769 7.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.268 5.268 3 C -0.058 4.058 4 C -0.164 4.164 5 C 0.051 3.949 6 H 0.050 0.950 7 C -0.149 4.149 8 C -0.161 4.161 9 C 0.057 3.943 10 H 0.139 0.861 11 C -0.062 4.062 12 N -0.312 5.312 13 C -0.333 4.333 14 H 0.095 0.905 15 C -0.210 4.210 16 N -0.570 5.570 17 Si 0.741 3.259 18 H -0.207 1.207 19 H -0.221 1.221 20 H -0.219 1.219 21 H 0.031 0.969 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.390 -0.403 -6.911 7.708 hybrid contribution -0.129 1.040 1.469 1.804 sum -3.519 0.638 -5.443 6.513 Atomic orbital electron populations 1.22306 0.89646 1.00707 0.98962 1.61421 1.04993 1.14351 1.46021 1.22115 0.94892 0.87867 1.00908 1.22739 0.97272 0.98885 0.97486 1.20850 0.94701 0.93423 0.85965 0.95038 1.22098 0.99656 0.95702 0.97454 1.22089 0.99430 0.97330 0.97208 1.21416 0.89118 0.86904 0.96841 0.86134 1.22383 0.97930 0.95134 0.90727 1.45136 1.66823 1.20304 0.98949 1.19045 1.29519 0.99907 0.84780 0.90529 1.24692 1.01627 0.97804 0.96847 1.69713 1.48327 1.22002 1.16960 0.86055 0.77999 0.79482 0.82363 1.20681 1.22051 1.21890 0.96872 0.92775 0.92532 0.91191 0.95164 0.93625 0.93332 0.91414 0.93766 0.92537 0.93366 0.94394 0.93513 0.93931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.31 60.07 0.56 1.11 16 2 N -0.54 -10.86 3.85 -243.02 -0.93 -11.79 16 3 C 0.07 1.46 5.32 -3.26 -0.02 1.44 16 4 C -0.12 -2.40 6.01 -25.28 -0.15 -2.55 16 5 C 0.16 3.39 3.51 -66.96 -0.23 3.16 16 6 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 7 C -0.11 -2.10 5.91 -26.21 -0.15 -2.26 16 8 C -0.12 -2.45 6.43 -26.32 -0.17 -2.62 16 9 C 0.16 3.85 2.66 -67.04 -0.18 3.68 16 10 H 0.12 3.26 5.74 -51.93 -0.30 2.96 16 11 C 0.07 1.50 4.44 -4.40 -0.02 1.48 16 12 N -0.59 -14.66 1.85 -155.52 -0.29 -14.95 16 13 C -0.20 -5.53 9.35 -15.06 -0.14 -5.67 16 14 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 15 C -0.01 -0.40 5.49 -17.43 -0.10 -0.50 16 16 N -0.92 -25.89 9.38 55.49 0.52 -25.37 16 17 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 22 H 0.05 0.81 7.98 -51.93 -0.41 0.40 16 23 H 0.06 0.87 8.09 -51.93 -0.42 0.45 16 24 H 0.07 1.72 5.83 -51.93 -0.30 1.41 16 25 H 0.03 0.56 7.49 -51.93 -0.39 0.17 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.86 7.37 -51.93 -0.38 0.48 16 28 H 0.07 1.24 7.12 -51.93 -0.37 0.87 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 1.05 7.95 -51.93 -0.41 0.64 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.04 0.80 7.98 -51.93 -0.41 0.38 16 33 H 0.05 1.21 7.11 -51.93 -0.37 0.84 16 34 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 253.90 15.07 3.83 3.83 Total: -1.00 -27.73 253.90 -7.93 -35.67 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -5.43 Total: -1.56 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -0.60 Total: -2.74 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.70 Total: -52.12 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -27.73 -7.93 -35.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718919075.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.456 kcal (2) G-P(sol) polarization free energy of solvation -27.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds