Wall clock time and date at job start Sun Mar 29 2020 21:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46070 * 110.96646 * 2 1 4 4 C 1.54929 * 110.79704 * 223.32618 * 3 2 1 5 5 C 1.53830 * 108.15636 * 302.02430 * 4 3 2 6 6 H 1.08997 * 109.68960 * 211.65596 * 5 4 3 7 7 C 1.53137 * 108.82156 * 91.64001 * 5 4 3 8 8 C 1.53871 * 105.15145 * 240.71667 * 7 5 4 9 9 C 1.52921 * 104.20207 * 16.75884 * 8 7 5 10 10 H 1.08999 * 109.88446 * 211.74659 * 9 8 7 11 11 C 1.47194 * 111.00132 * 124.61848 * 2 1 3 12 12 N 1.47356 * 109.19230 * 331.66278 * 5 4 3 13 13 C 1.36941 * 127.53458 * 281.68938 * 12 5 4 14 14 H 1.07997 * 119.99935 * 0.02562 * 13 12 5 15 15 C 1.38815 * 119.99867 * 180.02562 * 13 12 5 16 16 N 1.31620 * 120.00029 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99839 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47315 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47470 * 120.00044 * 17 15 13 20 20 H 1.48509 * 109.47157 * 240.00031 * 17 15 13 21 21 H 1.08999 * 109.47126 * 295.38363 * 1 2 3 22 22 H 1.08998 * 109.46866 * 55.38294 * 1 2 3 23 23 H 1.08995 * 109.46903 * 175.38286 * 1 2 3 24 24 H 1.08998 * 109.16890 * 103.01873 * 3 2 1 25 25 H 1.08997 * 109.25785 * 343.69679 * 3 2 1 26 26 H 1.09002 * 109.73433 * 182.34364 * 4 3 2 27 27 H 1.09002 * 109.73168 * 61.70192 * 4 3 2 28 28 H 1.09003 * 110.30730 * 359.63212 * 7 5 4 29 29 H 1.09001 * 110.30503 * 121.79659 * 7 5 4 30 30 H 1.08999 * 110.48480 * 135.43498 * 8 7 5 31 31 H 1.09002 * 110.48636 * 258.08047 * 8 7 5 32 32 H 1.08996 * 108.88047 * 46.46816 * 11 2 1 33 33 H 1.08998 * 108.80157 * 287.95850 * 11 2 1 34 34 H 0.97001 * 119.99868 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9917 1.3640 0.0000 4 6 3.1724 1.5007 -0.9938 5 6 4.2594 0.4904 -0.5886 6 1 5.2426 0.8891 -0.8380 7 6 4.0252 -0.8185 -1.3482 8 6 3.7899 -1.8793 -0.2587 9 6 3.4792 -1.0644 0.9974 10 1 3.8361 -1.5940 1.8807 11 6 1.9965 -0.7807 1.1309 12 7 4.1798 0.2494 0.8630 13 6 4.6459 1.0532 1.8689 14 1 5.1376 1.9850 1.6316 15 6 4.4864 0.6702 3.1936 16 7 3.8876 -0.4656 3.4828 17 14 5.1216 1.7670 4.5658 18 1 5.7500 2.9785 3.9805 19 1 3.9915 2.1699 5.4409 20 1 6.1279 1.0248 5.3671 21 1 -0.3633 0.4405 0.9284 22 1 -0.3633 0.5838 -0.8457 23 1 -0.3633 -1.0243 -0.0827 24 1 2.3363 1.6152 1.0031 25 1 1.1981 2.0531 -0.2889 26 1 3.5754 2.5125 -0.9496 27 1 2.8286 1.2854 -2.0055 28 1 3.1471 -0.7325 -1.9883 29 1 4.9033 -1.0738 -1.9415 30 1 2.9434 -2.5139 -0.5207 31 1 4.6873 -2.4802 -0.1112 32 1 1.4598 -1.7277 1.1866 33 1 1.8254 -0.2240 2.0522 34 1 3.7765 -0.7334 4.4085 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718919075.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:23 Heat of formation + Delta-G solvation = 23.416315 kcal Electronic energy + Delta-G solvation = -15394.946485 eV Core-core repulsion = 13134.960446 eV Total energy + Delta-G solvation = -2259.986039 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.59112 -36.53197 -34.57751 -33.35345 -31.04414 -29.19845 -26.86185 -25.92211 -25.09766 -21.93051 -20.96075 -20.24226 -18.54620 -17.05834 -16.39443 -15.91179 -15.78810 -15.19168 -14.59239 -14.41550 -14.24522 -13.71600 -13.47453 -13.00471 -12.84945 -12.77637 -12.49961 -12.45432 -12.07951 -11.76819 -11.70017 -11.31591 -11.23015 -11.07813 -10.88092 -10.64235 -8.94594 -8.71311 -7.69766 -5.09734 1.44787 1.46138 1.54798 2.51835 3.28725 3.40263 3.70557 4.17071 4.17496 4.40358 4.48471 4.51809 4.56354 4.64766 4.73680 4.85960 5.00154 5.01711 5.06320 5.15830 5.22650 5.24256 5.39411 5.41234 5.51265 5.59687 5.73088 5.84988 5.88779 6.31611 6.50640 6.55079 7.18665 7.86271 8.62166 9.32768 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.033544 B = 0.013415 C = 0.012717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.513868 B = 2086.670624 C = 2201.318280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.536 5.536 3 C 0.074 3.926 4 C -0.115 4.115 5 C 0.146 3.854 6 H 0.025 0.975 7 C -0.099 4.099 8 C -0.114 4.114 9 C 0.158 3.842 10 H 0.081 0.919 11 C 0.083 3.917 12 N -0.606 5.606 13 C -0.209 4.209 14 H 0.073 0.927 15 C -0.065 4.065 16 N -0.940 5.940 17 Si 0.966 3.034 18 H -0.272 1.272 19 H -0.299 1.299 20 H -0.295 1.295 21 H 0.003 0.997 22 H 0.080 0.920 23 H 0.072 0.928 24 H 0.023 0.977 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.001 0.999 34 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.189 -0.069 -8.824 9.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.261 5.261 3 C -0.054 4.054 4 C -0.155 4.155 5 C 0.040 3.960 6 H 0.043 0.957 7 C -0.137 4.137 8 C -0.153 4.153 9 C 0.052 3.948 10 H 0.098 0.902 11 C -0.047 4.047 12 N -0.329 5.329 13 C -0.339 4.339 14 H 0.091 0.909 15 C -0.258 4.258 16 N -0.591 5.591 17 Si 0.797 3.203 18 H -0.196 1.196 19 H -0.227 1.227 20 H -0.222 1.222 21 H 0.022 0.978 22 H 0.098 0.902 23 H 0.091 0.909 24 H 0.041 0.959 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.019 0.981 34 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.982 -0.238 -9.004 9.848 hybrid contribution 0.031 1.005 2.083 2.313 sum -3.951 0.767 -6.921 8.006 Atomic orbital electron populations 1.22430 0.87392 1.02302 0.99584 1.61449 1.06974 1.13616 1.44050 1.22032 0.96016 0.88664 0.98724 1.22660 0.96025 0.98430 0.98417 1.21117 0.95135 0.95480 0.84313 0.95683 1.22052 1.01311 0.93493 0.96882 1.21998 1.00179 0.97361 0.95767 1.21324 0.89610 0.86698 0.97146 0.90153 1.22053 0.97650 0.95227 0.89724 1.45295 1.66859 1.20569 1.00210 1.19235 1.28853 1.00028 0.85743 0.90903 1.25347 1.02593 0.99127 0.98708 1.69952 1.49450 1.23182 1.16477 0.85165 0.77023 0.78343 0.79802 1.19623 1.22664 1.22229 0.97787 0.90167 0.90875 0.95885 0.92950 0.93481 0.90524 0.89841 0.91673 0.90636 0.93414 0.93352 0.98103 0.94810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 9.31 127.69 1.19 2.15 16 2 N -0.54 -20.36 3.85 -922.78 -3.55 -23.91 16 3 C 0.07 2.95 5.32 87.12 0.46 3.41 16 4 C -0.12 -4.19 6.01 31.53 0.19 -4.00 16 5 C 0.15 6.02 3.51 45.15 0.16 6.18 16 6 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 7 C -0.10 -3.44 5.91 30.93 0.18 -3.26 16 8 C -0.11 -4.38 6.43 30.86 0.20 -4.18 16 9 C 0.16 7.50 2.66 43.90 0.12 7.62 16 10 H 0.08 4.49 5.74 -2.39 -0.01 4.48 16 11 C 0.08 3.71 4.44 85.77 0.38 4.10 16 12 N -0.61 -30.31 1.85 -645.94 -1.19 -31.51 16 13 C -0.21 -11.55 9.35 84.03 0.79 -10.77 16 14 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 15 C -0.07 -3.66 5.49 84.86 0.47 -3.19 16 16 N -0.94 -54.87 9.38 21.65 0.20 -54.67 16 17 Si 0.97 46.20 29.55 68.60 2.03 48.23 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 20 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 21 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 22 H 0.08 2.08 7.98 -2.39 -0.02 2.06 16 23 H 0.07 2.02 8.09 -2.39 -0.02 2.00 16 24 H 0.02 1.13 5.83 -2.39 -0.01 1.12 16 25 H 0.05 1.82 7.49 -2.39 -0.02 1.81 16 26 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.08 2.39 7.37 -2.39 -0.02 2.37 16 28 H 0.08 2.65 7.12 -2.39 -0.02 2.64 16 29 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.08 2.59 7.95 -2.39 -0.02 2.57 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.05 2.01 7.98 -2.39 -0.02 2.00 16 33 H 0.00 0.03 7.11 -2.39 -0.02 0.02 16 34 H 0.24 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -60.65 253.90 2.68 -57.97 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: 1.06 Total: 5.84 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 4.13 Total: -1.96 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -4.54 Total: -110.08 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -60.65 2.68 -57.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718919075.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.388 kcal (2) G-P(sol) polarization free energy of solvation -60.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds