Wall clock time and date at job start Sun Mar 29 2020 21:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48501 * 109.46950 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47074 * 300.00488 * 3 2 1 6 6 H 1.48505 * 109.46997 * 60.00482 * 3 2 1 7 7 C 1.37873 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47140 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99888 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47041 * 179.97438 * 11 10 9 13 13 C 1.38145 * 119.59705 * 94.99863 * 12 11 10 14 14 C 1.38714 * 119.22189 * 179.97438 * 13 12 11 15 15 C 1.38552 * 118.44622 * 0.02562 * 14 13 12 16 16 C 1.38515 * 119.14235 * 359.97438 * 15 14 13 17 17 F 1.35095 * 119.64954 * 180.02562 * 16 15 14 18 18 N 1.31902 * 119.60449 * 274.72677 * 12 11 10 19 19 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47103 * 60.00168 * 9 7 2 21 21 H 1.09000 * 109.47247 * 300.00046 * 9 7 2 22 22 H 1.00901 * 111.00013 * 303.95472 * 10 9 7 23 23 H 1.08997 * 109.47334 * 299.99788 * 11 10 9 24 24 H 1.08995 * 109.47296 * 60.00089 * 11 10 9 25 25 H 1.07996 * 120.39393 * 359.96115 * 13 12 11 26 26 H 1.07989 * 120.77702 * 180.02562 * 14 13 12 27 27 H 1.08000 * 120.42780 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 1.5055 -4.9070 0.0001 12 6 2.5151 -6.0259 -0.0006 13 6 2.8953 -6.6025 1.1958 14 6 3.8247 -7.6322 1.1861 15 6 4.3396 -8.0450 -0.0321 16 6 3.9117 -7.4202 -1.1919 17 9 4.4067 -7.8149 -2.3853 18 7 3.0209 -6.4465 -1.1438 19 1 -0.4850 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8897 22 1 2.8407 -3.5486 -0.7819 23 1 0.8810 -4.9812 0.8903 24 1 0.8804 -4.9817 -0.8896 25 1 2.4741 -6.2556 2.1278 26 1 4.1395 -8.1012 2.1066 27 1 5.0653 -8.8436 -0.0768 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819184587.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:38 Heat of formation + Delta-G solvation = -10.611885 kcal Electronic energy + Delta-G solvation = -12827.021505 eV Core-core repulsion = 10306.266492 eV Total energy + Delta-G solvation = -2520.755013 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.96496 -40.07071 -35.43837 -32.89138 -32.39970 -30.87956 -27.37081 -24.86728 -23.41978 -22.07442 -21.31241 -17.84651 -16.97990 -16.33185 -16.12874 -16.02130 -14.82468 -14.50770 -14.22872 -13.78172 -13.32017 -13.04128 -12.60744 -12.43359 -11.94773 -11.46910 -11.25857 -10.74551 -10.70399 -10.10522 -9.94218 -9.60301 -9.20544 -8.86464 -8.49948 -7.39640 -6.04822 -4.06740 0.93800 1.12776 3.31159 3.38258 3.43631 3.53869 3.62616 4.41591 4.45889 4.71391 4.90082 5.02005 5.31404 5.40944 5.51971 5.68355 5.78851 5.98249 6.10409 6.18306 6.64184 7.16284 7.37701 7.74484 7.75662 8.07653 8.30509 8.53283 9.02052 9.58180 11.06352 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.052692 B = 0.005760 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.261192 B = 4859.620531 C = 4997.432401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.683 5.683 11 C 0.102 3.898 12 C 0.184 3.816 13 C -0.164 4.164 14 C -0.050 4.050 15 C -0.206 4.206 16 C 0.305 3.695 17 F -0.118 7.118 18 N -0.512 5.512 19 H 0.261 0.739 20 H -0.010 1.010 21 H 0.031 0.969 22 H 0.335 0.665 23 H 0.087 0.913 24 H 0.044 0.956 25 H 0.146 0.854 26 H 0.144 0.856 27 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.040 -15.180 2.217 16.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.314 5.314 11 C -0.028 4.028 12 C 0.046 3.954 13 C -0.185 4.185 14 C -0.076 4.076 15 C -0.227 4.227 16 C 0.151 3.849 17 F -0.097 7.097 18 N -0.227 5.227 19 H 0.071 0.929 20 H 0.008 0.992 21 H 0.049 0.951 22 H 0.151 0.849 23 H 0.105 0.895 24 H 0.062 0.938 25 H 0.164 0.836 26 H 0.162 0.838 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.711 -14.671 2.079 15.880 hybrid contribution 0.466 0.404 -0.465 0.772 sum 6.176 -14.267 1.614 15.630 Atomic orbital electron populations 1.69970 1.06067 1.26755 1.50907 1.24986 0.94898 0.99397 0.95284 0.86409 0.80068 0.83229 0.77511 1.19644 1.21062 1.20968 1.21194 0.93595 0.90093 1.50367 0.91871 1.19616 0.90552 0.87039 0.96103 1.60804 1.21095 1.00129 1.49356 1.20899 0.92408 0.87723 1.01794 1.21238 0.93802 0.93928 0.86421 1.22068 0.99258 0.97260 0.99918 1.21479 0.93810 0.94700 0.97571 1.21741 1.04851 1.04074 0.92073 1.18148 0.93006 0.92804 0.80979 1.91605 1.84845 1.88636 1.44591 1.66836 1.10753 1.12933 1.32176 0.92916 0.99180 0.95105 0.84857 0.89452 0.93839 0.83605 0.83843 0.83905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 13.29 55.43 0.74 -26.03 15 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 15 3 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 15 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 7 C -0.51 -14.64 9.32 -34.44 -0.32 -14.96 15 8 H 0.06 1.78 7.81 -52.48 -0.41 1.37 15 9 C 0.19 5.05 5.44 -4.97 -0.03 5.02 15 10 N -0.68 -14.86 6.48 -116.34 -0.75 -15.61 15 11 C 0.10 1.82 5.99 -4.97 -0.03 1.79 15 12 C 0.18 2.93 6.29 -82.59 -0.52 2.41 15 13 C -0.16 -2.09 9.72 -39.44 -0.38 -2.47 15 14 C -0.05 -0.52 10.17 -39.29 -0.40 -0.92 15 15 C -0.21 -2.30 10.09 -39.36 -0.40 -2.70 15 16 C 0.30 4.46 8.41 -17.35 -0.15 4.32 15 17 F -0.12 -1.72 17.29 2.25 0.04 -1.68 15 18 N -0.51 -8.69 10.29 -9.81 -0.10 -8.80 15 19 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 20 H -0.01 -0.27 8.14 -51.93 -0.42 -0.69 15 21 H 0.03 0.85 8.14 -51.93 -0.42 0.42 15 22 H 0.33 7.38 8.72 -39.29 -0.34 7.04 15 23 H 0.09 1.42 8.04 -51.93 -0.42 1.01 15 24 H 0.04 0.81 8.14 -51.93 -0.42 0.38 15 25 H 0.15 1.59 8.06 -52.49 -0.42 1.17 15 26 H 0.14 0.96 8.06 -52.49 -0.42 0.54 15 27 H 0.14 1.16 8.06 -52.49 -0.42 0.74 15 LS Contribution 250.56 15.07 3.78 3.78 Total: -1.00 -30.98 250.56 -6.49 -37.47 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -2.84 Total: 0.12 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -2.32 Total: -6.00 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.12 Total: -50.43 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.98 -6.49 -37.47 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819184587.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.854 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds