Wall clock time and date at job start Sun Mar 29 2020 21:27:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31522 * 1
3 3 Si 1.86803 * 119.99776 * 2 1
4 4 H 1.48501 * 109.46950 * 180.02562 * 3 2 1
5 5 H 1.48500 * 109.47074 * 300.00488 * 3 2 1
6 6 H 1.48505 * 109.46997 * 60.00482 * 3 2 1
7 7 C 1.37873 * 120.00244 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1
9 9 C 1.50699 * 119.99861 * 359.97438 * 7 2 1
10 10 N 1.46906 * 109.47140 * 180.02562 * 9 7 2
11 11 C 1.46898 * 110.99888 * 179.97438 * 10 9 7
12 12 C 1.50704 * 109.47041 * 179.97438 * 11 10 9
13 13 C 1.38145 * 119.59705 * 94.99863 * 12 11 10
14 14 C 1.38714 * 119.22189 * 179.97438 * 13 12 11
15 15 C 1.38552 * 118.44622 * 0.02562 * 14 13 12
16 16 C 1.38515 * 119.14235 * 359.97438 * 15 14 13
17 17 F 1.35095 * 119.64954 * 180.02562 * 16 15 14
18 18 N 1.31902 * 119.60449 * 274.72677 * 12 11 10
19 19 H 0.96992 * 120.00038 * 359.97438 * 1 2 3
20 20 H 1.09004 * 109.47103 * 60.00168 * 9 7 2
21 21 H 1.09000 * 109.47247 * 300.00046 * 9 7 2
22 22 H 1.00901 * 111.00013 * 303.95472 * 10 9 7
23 23 H 1.08997 * 109.47334 * 299.99788 * 11 10 9
24 24 H 1.08995 * 109.47296 * 60.00089 * 11 10 9
25 25 H 1.07996 * 120.39393 * 359.96115 * 13 12 11
26 26 H 1.07989 * 120.77702 * 180.02562 * 14 13 12
27 27 H 1.08000 * 120.42780 * 179.97438 * 15 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.7092 1.3465 -0.0006
5 1 1.8903 2.3965 -1.2124
6 1 1.8904 2.3964 1.2126
7 6 2.0046 -1.1940 -0.0005
8 1 3.0847 -1.1940 -0.0010
9 6 1.2512 -2.4991 -0.0005
10 7 2.2058 -3.6157 -0.0005
11 6 1.5055 -4.9070 0.0001
12 6 2.5151 -6.0259 -0.0006
13 6 2.8953 -6.6025 1.1958
14 6 3.8247 -7.6322 1.1861
15 6 4.3396 -8.0450 -0.0321
16 6 3.9117 -7.4202 -1.1919
17 9 4.4067 -7.8149 -2.3853
18 7 3.0209 -6.4465 -1.1438
19 1 -0.4850 0.8400 0.0004
20 1 0.6242 -2.5567 -0.8903
21 1 0.6248 -2.5571 0.8897
22 1 2.8407 -3.5486 -0.7819
23 1 0.8810 -4.9812 0.8903
24 1 0.8804 -4.9817 -0.8896
25 1 2.4741 -6.2556 2.1278
26 1 4.1395 -8.1012 2.1066
27 1 5.0653 -8.8436 -0.0768
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000819184587.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:27:38
Heat of formation + Delta-G solvation = -10.611885 kcal
Electronic energy + Delta-G solvation = -12827.021505 eV
Core-core repulsion = 10306.266492 eV
Total energy + Delta-G solvation = -2520.755013 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 210.086 amu
Computer time = 0.13 seconds
Orbital eigenvalues (eV)
-48.96496 -40.07071 -35.43837 -32.89138 -32.39970 -30.87956 -27.37081 -24.86728
-23.41978 -22.07442 -21.31241 -17.84651 -16.97990 -16.33185 -16.12874 -16.02130
-14.82468 -14.50770 -14.22872 -13.78172 -13.32017 -13.04128 -12.60744 -12.43359
-11.94773 -11.46910 -11.25857 -10.74551 -10.70399 -10.10522 -9.94218 -9.60301
-9.20544 -8.86464 -8.49948 -7.39640 -6.04822 -4.06740 0.93800 1.12776
3.31159 3.38258 3.43631 3.53869 3.62616 4.41591 4.45889 4.71391
4.90082 5.02005 5.31404 5.40944 5.51971 5.68355 5.78851 5.98249
6.10409 6.18306 6.64184 7.16284 7.37701 7.74484 7.75662 8.07653
8.30509 8.53283 9.02052 9.58180 11.06352
Molecular weight = 210.09amu
Principal moments of inertia in cm(-1)
A = 0.052692 B = 0.005760 C = 0.005602
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 531.261192 B = 4859.620531 C = 4997.432401
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.898 5.898
2 C 0.056 3.944
3 Si 0.900 3.100
4 H -0.272 1.272
5 H -0.284 1.284
6 H -0.284 1.284
7 C -0.514 4.514
8 H 0.063 0.937
9 C 0.193 3.807
10 N -0.683 5.683
11 C 0.102 3.898
12 C 0.184 3.816
13 C -0.164 4.164
14 C -0.050 4.050
15 C -0.206 4.206
16 C 0.305 3.695
17 F -0.118 7.118
18 N -0.512 5.512
19 H 0.261 0.739
20 H -0.010 1.010
21 H 0.031 0.969
22 H 0.335 0.665
23 H 0.087 0.913
24 H 0.044 0.956
25 H 0.146 0.854
26 H 0.144 0.856
27 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.040 -15.180 2.217 16.487
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.537 5.537
2 C -0.146 4.146
3 Si 0.728 3.272
4 H -0.196 1.196
5 H -0.211 1.211
6 H -0.210 1.210
7 C -0.552 4.552
8 H 0.081 0.919
9 C 0.067 3.933
10 N -0.314 5.314
11 C -0.028 4.028
12 C 0.046 3.954
13 C -0.185 4.185
14 C -0.076 4.076
15 C -0.227 4.227
16 C 0.151 3.849
17 F -0.097 7.097
18 N -0.227 5.227
19 H 0.071 0.929
20 H 0.008 0.992
21 H 0.049 0.951
22 H 0.151 0.849
23 H 0.105 0.895
24 H 0.062 0.938
25 H 0.164 0.836
26 H 0.162 0.838
27 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges 5.711 -14.671 2.079 15.880
hybrid contribution 0.466 0.404 -0.465 0.772
sum 6.176 -14.267 1.614 15.630
Atomic orbital electron populations
1.69970 1.06067 1.26755 1.50907 1.24986 0.94898 0.99397 0.95284
0.86409 0.80068 0.83229 0.77511 1.19644 1.21062 1.20968 1.21194
0.93595 0.90093 1.50367 0.91871 1.19616 0.90552 0.87039 0.96103
1.60804 1.21095 1.00129 1.49356 1.20899 0.92408 0.87723 1.01794
1.21238 0.93802 0.93928 0.86421 1.22068 0.99258 0.97260 0.99918
1.21479 0.93810 0.94700 0.97571 1.21741 1.04851 1.04074 0.92073
1.18148 0.93006 0.92804 0.80979 1.91605 1.84845 1.88636 1.44591
1.66836 1.10753 1.12933 1.32176 0.92916 0.99180 0.95105 0.84857
0.89452 0.93839 0.83605 0.83843 0.83905
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.76 13.29 55.43 0.74 -26.03 15
2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 15
3 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 15
4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15
5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15
6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15
7 C -0.51 -14.64 9.32 -34.44 -0.32 -14.96 15
8 H 0.06 1.78 7.81 -52.48 -0.41 1.37 15
9 C 0.19 5.05 5.44 -4.97 -0.03 5.02 15
10 N -0.68 -14.86 6.48 -116.34 -0.75 -15.61 15
11 C 0.10 1.82 5.99 -4.97 -0.03 1.79 15
12 C 0.18 2.93 6.29 -82.59 -0.52 2.41 15
13 C -0.16 -2.09 9.72 -39.44 -0.38 -2.47 15
14 C -0.05 -0.52 10.17 -39.29 -0.40 -0.92 15
15 C -0.21 -2.30 10.09 -39.36 -0.40 -2.70 15
16 C 0.30 4.46 8.41 -17.35 -0.15 4.32 15
17 F -0.12 -1.72 17.29 2.25 0.04 -1.68 15
18 N -0.51 -8.69 10.29 -9.81 -0.10 -8.80 15
19 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15
20 H -0.01 -0.27 8.14 -51.93 -0.42 -0.69 15
21 H 0.03 0.85 8.14 -51.93 -0.42 0.42 15
22 H 0.33 7.38 8.72 -39.29 -0.34 7.04 15
23 H 0.09 1.42 8.04 -51.93 -0.42 1.01 15
24 H 0.04 0.81 8.14 -51.93 -0.42 0.38 15
25 H 0.15 1.59 8.06 -52.49 -0.42 1.17 15
26 H 0.14 0.96 8.06 -52.49 -0.42 0.54 15
27 H 0.14 1.16 8.06 -52.49 -0.42 0.74 15
LS Contribution 250.56 15.07 3.78 3.78
Total: -1.00 -30.98 250.56 -6.49 -37.47
By element:
Atomic # 1 Polarization: 2.96 SS G_CDS: -2.84 Total: 0.12 kcal
Atomic # 6 Polarization: -3.68 SS G_CDS: -2.32 Total: -6.00 kcal
Atomic # 7 Polarization: -50.31 SS G_CDS: -0.12 Total: -50.43 kcal
Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal
Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal
Total LS contribution 3.78 Total: 3.78 kcal
Total: -30.98 -6.49 -37.47 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000819184587.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.854 kcal
(2) G-P(sol) polarization free energy of solvation -30.979 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.125 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.486 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.466 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.612 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.13 seconds