Wall clock time and date at job start Sun Mar 29 2020 21:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48501 * 109.46950 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47074 * 300.00488 * 3 2 1 6 6 H 1.48505 * 109.46997 * 60.00482 * 3 2 1 7 7 C 1.37873 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47140 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99888 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47041 * 179.97438 * 11 10 9 13 13 C 1.38145 * 119.59705 * 94.99863 * 12 11 10 14 14 C 1.38714 * 119.22189 * 179.97438 * 13 12 11 15 15 C 1.38552 * 118.44622 * 0.02562 * 14 13 12 16 16 C 1.38515 * 119.14235 * 359.97438 * 15 14 13 17 17 F 1.35095 * 119.64954 * 180.02562 * 16 15 14 18 18 N 1.31902 * 119.60449 * 274.72677 * 12 11 10 19 19 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47103 * 60.00168 * 9 7 2 21 21 H 1.09000 * 109.47247 * 300.00046 * 9 7 2 22 22 H 1.00901 * 111.00013 * 303.95472 * 10 9 7 23 23 H 1.08997 * 109.47334 * 299.99788 * 11 10 9 24 24 H 1.08995 * 109.47296 * 60.00089 * 11 10 9 25 25 H 1.07996 * 120.39393 * 359.96115 * 13 12 11 26 26 H 1.07989 * 120.77702 * 180.02562 * 14 13 12 27 27 H 1.08000 * 120.42780 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 1.5055 -4.9070 0.0001 12 6 2.5151 -6.0259 -0.0006 13 6 2.8953 -6.6025 1.1958 14 6 3.8247 -7.6322 1.1861 15 6 4.3396 -8.0450 -0.0321 16 6 3.9117 -7.4202 -1.1919 17 9 4.4067 -7.8149 -2.3853 18 7 3.0209 -6.4465 -1.1438 19 1 -0.4850 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8897 22 1 2.8407 -3.5486 -0.7819 23 1 0.8810 -4.9812 0.8903 24 1 0.8804 -4.9817 -0.8896 25 1 2.4741 -6.2556 2.1278 26 1 4.1395 -8.1012 2.1066 27 1 5.0653 -8.8436 -0.0768 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819184587.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:38 Heat of formation + Delta-G solvation = -32.968341 kcal Electronic energy + Delta-G solvation = -12827.990954 eV Core-core repulsion = 10306.266492 eV Total energy + Delta-G solvation = -2521.724461 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -50.03570 -41.13826 -37.15998 -34.73177 -33.61113 -32.23898 -29.13216 -26.49674 -24.44049 -23.71741 -22.90274 -19.04515 -18.55353 -17.85411 -17.13639 -17.04685 -16.76656 -16.23280 -15.44729 -15.30882 -14.64006 -14.31883 -13.94185 -13.92588 -13.34391 -13.15709 -12.95207 -12.65204 -12.55717 -12.06985 -11.36317 -10.99511 -10.70237 -10.64747 -9.93737 -9.23424 -8.23795 -6.34854 -0.08662 0.17010 1.41624 1.41828 1.56083 2.38412 2.48823 2.58325 3.09758 3.40338 3.71227 3.78224 4.01157 4.11594 4.42850 4.51137 4.70938 4.79941 5.01214 5.05446 5.14766 5.23795 5.58061 5.66580 5.97578 6.32618 6.57310 6.68996 6.83164 7.35676 8.88008 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.052692 B = 0.005760 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.261192 B = 4859.620531 C = 4997.432401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.537 4.537 8 H 0.062 0.938 9 C 0.207 3.793 10 N -0.677 5.677 11 C 0.105 3.895 12 C 0.155 3.845 13 C -0.160 4.160 14 C -0.034 4.034 15 C -0.184 4.184 16 C 0.276 3.724 17 F -0.126 7.126 18 N -0.552 5.552 19 H 0.266 0.734 20 H -0.038 1.038 21 H 0.014 0.986 22 H 0.331 0.669 23 H 0.101 0.899 24 H 0.027 0.973 25 H 0.165 0.835 26 H 0.193 0.807 27 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.754 -16.079 3.697 18.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.080 0.920 9 C 0.080 3.920 10 N -0.308 5.308 11 C -0.025 4.025 12 C 0.018 3.982 13 C -0.180 4.180 14 C -0.060 4.060 15 C -0.205 4.205 16 C 0.122 3.878 17 F -0.105 7.105 18 N -0.269 5.269 19 H 0.075 0.925 20 H -0.021 1.021 21 H 0.032 0.968 22 H 0.147 0.853 23 H 0.119 0.881 24 H 0.045 0.955 25 H 0.182 0.818 26 H 0.210 0.790 27 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 7.428 -15.593 3.562 17.635 hybrid contribution -0.062 0.562 -0.917 1.077 sum 7.366 -15.031 2.646 16.947 Atomic orbital electron populations 1.70086 1.07706 1.28039 1.51380 1.25937 0.95828 1.03327 0.94496 0.85265 0.78821 0.78235 0.77840 1.18865 1.20413 1.20013 1.21530 0.93737 0.91412 1.50829 0.91994 1.19280 0.90552 0.88382 0.93833 1.60678 1.20265 1.00814 1.48998 1.20883 0.93110 0.86828 1.01663 1.20892 0.94991 0.94644 0.87681 1.22325 0.99232 0.97339 0.99119 1.22023 0.91791 0.93102 0.99036 1.22188 1.04013 1.03481 0.90815 1.18540 0.93742 0.93525 0.81984 1.91581 1.84932 1.88686 1.45306 1.66585 1.12235 1.14614 1.33417 0.92506 1.02075 0.96825 0.85285 0.88083 0.95466 0.81774 0.78952 0.80172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.40 13.29 21.45 0.28 -56.11 15 2 C 0.00 0.15 5.46 84.65 0.46 0.61 15 3 Si 0.97 44.65 29.54 68.60 2.03 46.68 15 4 H -0.26 -11.71 7.11 99.48 0.71 -11.00 15 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 15 7 C -0.54 -31.12 9.32 25.60 0.24 -30.88 15 8 H 0.06 3.52 7.81 -2.91 -0.02 3.50 15 9 C 0.21 11.24 5.44 85.56 0.47 11.70 15 10 N -0.68 -30.32 6.48 -521.97 -3.38 -33.70 15 11 C 0.10 3.86 5.99 85.56 0.51 4.37 15 12 C 0.15 4.89 6.29 42.53 0.27 5.16 15 13 C -0.16 -3.64 9.72 22.36 0.22 -3.42 15 14 C -0.03 -0.55 10.17 22.46 0.23 -0.32 15 15 C -0.18 -3.45 10.09 22.41 0.23 -3.22 15 16 C 0.28 7.79 8.41 84.72 0.71 8.50 15 17 F -0.13 -3.63 17.29 44.97 0.78 -2.85 15 18 N -0.55 -18.93 10.29 -184.96 -1.90 -20.83 15 19 H 0.27 15.02 8.31 -92.71 -0.77 14.25 15 20 H -0.04 -2.26 8.14 -2.38 -0.02 -2.28 15 21 H 0.01 0.78 8.14 -2.39 -0.02 0.76 15 22 H 0.33 15.13 8.72 -89.69 -0.78 14.35 15 23 H 0.10 3.34 8.04 -2.39 -0.02 3.33 15 24 H 0.03 1.07 8.14 -2.39 -0.02 1.05 15 25 H 0.16 3.07 8.06 -2.91 -0.02 3.05 15 26 H 0.19 1.28 8.06 -2.92 -0.02 1.25 15 27 H 0.18 2.00 8.06 -2.91 -0.02 1.98 15 Total: -1.00 -68.79 250.56 1.53 -67.25 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 0.40 Total: 7.07 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 3.33 Total: -7.51 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -5.00 Total: -110.64 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.78 Total: -2.85 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -68.79 1.53 -67.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819184587.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.286 kcal (2) G-P(sol) polarization free energy of solvation -68.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds