Wall clock time and date at job start Sun Mar 29 2020 21:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.47327 * 2 1 4 4 N 1.30254 * 125.61534 * 90.00204 * 3 2 1 5 5 C 1.34483 * 108.70003 * 179.97438 * 4 3 2 6 6 C 1.50706 * 126.16500 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.46995 * 275.02351 * 6 5 4 8 8 C 1.46898 * 110.99919 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.46837 * 180.02562 * 8 7 6 10 10 H 1.07995 * 120.00252 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99354 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00325 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99601 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47218 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46993 * 119.99738 * 13 11 9 16 16 H 1.48500 * 109.47442 * 240.00064 * 13 11 9 17 17 C 1.34322 * 107.66912 * 359.97438 * 5 4 3 18 18 O 1.33960 * 125.62340 * 269.97790 * 3 2 1 19 19 H 1.08999 * 109.47023 * 59.99891 * 1 2 3 20 20 H 1.08997 * 109.47364 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47215 * 299.99899 * 1 2 3 22 22 H 1.09002 * 109.47215 * 240.00101 * 2 1 3 23 23 H 1.09000 * 109.47436 * 120.00765 * 2 1 3 24 24 H 1.08993 * 109.46964 * 35.02215 * 6 5 4 25 25 H 1.08999 * 109.47047 * 155.02376 * 6 5 4 26 26 H 1.00903 * 110.99970 * 303.95841 * 7 6 5 27 27 H 1.09003 * 109.47008 * 299.99462 * 8 7 6 28 28 H 1.08992 * 109.47142 * 59.99761 * 8 7 6 29 29 H 0.97003 * 119.99628 * 180.02562 * 12 11 9 30 30 H 1.08003 * 126.44526 * 179.97438 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2852 2.1359 1.0589 5 6 2.7147 3.3488 0.6676 6 6 3.1160 4.4848 1.5729 7 7 1.9214 5.2455 1.9631 8 6 2.2751 6.3639 2.8474 9 6 1.0269 7.1188 3.2262 10 1 0.0671 6.7999 2.8475 11 6 1.1106 8.2166 4.0562 12 7 2.2794 8.6052 4.5169 13 14 -0.4364 9.1528 4.5252 14 1 -1.6138 8.5184 3.8797 15 1 -0.6052 9.1225 6.0003 16 1 -0.3202 10.5612 4.0690 17 6 2.7214 3.3651 -0.6755 18 8 2.2928 2.1563 -1.0889 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 3.5997 4.0855 2.4643 25 1 3.8090 5.1413 1.0467 26 1 1.4193 5.5718 1.1509 27 1 2.7531 5.9780 3.7478 28 1 2.9620 7.0332 2.3297 29 1 2.3381 9.3773 5.1012 30 1 3.0140 4.1921 -1.3056 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819355121.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:31 Heat of formation + Delta-G solvation = 10.838599 kcal Electronic energy + Delta-G solvation = -13157.539900 eV Core-core repulsion = 10761.175355 eV Total energy + Delta-G solvation = -2396.364545 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.11741 -35.88129 -34.55982 -33.75490 -32.27485 -29.57060 -27.10761 -24.61160 -24.17003 -21.52566 -21.17967 -20.45836 -17.10878 -16.48473 -16.27395 -15.09082 -14.85561 -14.58325 -14.29569 -13.53712 -13.27836 -13.14783 -12.71366 -12.07277 -11.85844 -11.43471 -11.25713 -11.25138 -10.88849 -10.71873 -10.59981 -10.23605 -9.93478 -9.19571 -8.59454 -8.47284 -7.30254 -6.02686 -4.04423 1.63346 2.88797 2.89603 3.32149 3.39277 3.44999 4.09435 4.44785 4.83886 4.99809 5.02846 5.17675 5.29918 5.33455 5.57292 5.60121 5.71952 5.82947 5.98987 6.02937 6.15823 6.30631 6.53977 7.22385 7.39625 7.78610 7.99726 8.12018 8.37869 8.59103 9.04696 9.60422 11.08544 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.049265 B = 0.005610 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.222155 B = 4989.770340 C = 5301.101694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.022 4.022 3 C 0.178 3.822 4 N -0.461 5.461 5 C 0.011 3.989 6 C 0.135 3.865 7 N -0.682 5.682 8 C 0.194 3.806 9 C -0.513 4.513 10 H 0.063 0.937 11 C 0.056 3.944 12 N -0.898 5.898 13 Si 0.900 3.100 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.285 1.285 17 C -0.086 4.086 18 O -0.208 6.208 19 H 0.058 0.942 20 H 0.069 0.931 21 H 0.067 0.933 22 H 0.088 0.912 23 H 0.103 0.897 24 H 0.082 0.918 25 H 0.037 0.963 26 H 0.328 0.672 27 H 0.031 0.969 28 H -0.012 1.012 29 H 0.261 0.739 30 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.137 -13.868 -11.045 17.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.060 4.060 3 C -0.029 4.029 4 N -0.191 5.191 5 C -0.109 4.109 6 C 0.005 3.995 7 N -0.312 5.312 8 C 0.067 3.933 9 C -0.552 4.552 10 H 0.081 0.919 11 C -0.146 4.146 12 N -0.538 5.538 13 Si 0.728 3.272 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.211 1.211 17 C -0.157 4.157 18 O -0.095 6.095 19 H 0.077 0.923 20 H 0.088 0.912 21 H 0.086 0.914 22 H 0.107 0.893 23 H 0.122 0.878 24 H 0.101 0.899 25 H 0.055 0.945 26 H 0.144 0.856 27 H 0.049 0.951 28 H 0.006 0.994 29 H 0.071 0.929 30 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -0.010 -14.377 -9.815 17.408 hybrid contribution -0.172 1.653 -0.993 1.936 sum -0.182 -12.725 -10.808 16.696 Atomic orbital electron populations 1.21784 0.93226 1.02635 1.03245 1.19982 0.96803 0.84499 1.04722 1.26336 1.00748 0.96910 0.78931 1.70375 1.15182 1.03656 1.29852 1.21946 1.02196 0.94360 0.92424 1.20184 0.93268 0.89873 0.96190 1.60645 1.20750 1.28922 1.20927 1.19600 0.96345 0.85877 0.91451 1.21210 0.93742 1.11022 1.29179 0.91903 1.24986 0.96307 0.97255 0.96016 1.69973 1.23424 1.26366 1.34006 0.86414 0.83172 0.79397 0.78266 1.19666 1.20944 1.21085 1.24767 1.07046 0.87508 0.96362 1.84381 1.64329 1.22970 1.37826 0.92275 0.91162 0.91418 0.89327 0.87830 0.89949 0.94492 0.85573 0.95130 0.99414 0.92945 0.77114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.89 37.15 0.37 -0.99 16 2 C -0.02 -0.21 6.56 -27.89 -0.18 -0.40 16 3 C 0.18 2.58 7.60 -12.95 -0.10 2.48 16 4 N -0.46 -8.25 11.29 -7.36 -0.08 -8.33 16 5 C 0.01 0.19 6.62 -82.81 -0.55 -0.36 16 6 C 0.13 2.58 6.23 -4.97 -0.03 2.55 16 7 N -0.68 -15.49 6.48 -116.34 -0.75 -16.24 16 8 C 0.19 5.20 5.44 -4.97 -0.03 5.17 16 9 C -0.51 -14.87 9.32 -34.44 -0.32 -15.19 16 10 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 13 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 17 C -0.09 -1.25 12.08 29.35 0.35 -0.89 16 18 O -0.21 -3.02 10.77 5.37 0.06 -2.96 16 19 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 20 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 21 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.33 7.08 8.71 -39.29 -0.34 6.73 16 27 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 28 H -0.01 -0.33 8.14 -51.93 -0.42 -0.75 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.21 2.28 8.06 -52.48 -0.42 1.86 16 LS Contribution 268.06 15.07 4.04 4.04 Total: -1.00 -32.96 268.06 -5.72 -38.68 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -4.11 Total: 0.33 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -0.58 Total: -6.11 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.10 Total: -50.95 kcal Atomic # 8 Polarization: -3.02 SS G_CDS: 0.06 Total: -2.96 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.96 -5.72 -38.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819355121.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.517 kcal (2) G-P(sol) polarization free energy of solvation -32.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds