Wall clock time and date at job start Sun Mar 29 2020 21:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.47327 * 2 1 4 4 N 1.30254 * 125.61534 * 90.00204 * 3 2 1 5 5 C 1.34483 * 108.70003 * 179.97438 * 4 3 2 6 6 C 1.50706 * 126.16500 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.46995 * 275.02351 * 6 5 4 8 8 C 1.46898 * 110.99919 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.46837 * 180.02562 * 8 7 6 10 10 H 1.07995 * 120.00252 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99354 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00325 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99601 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47218 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46993 * 119.99738 * 13 11 9 16 16 H 1.48500 * 109.47442 * 240.00064 * 13 11 9 17 17 C 1.34322 * 107.66912 * 359.97438 * 5 4 3 18 18 O 1.33960 * 125.62340 * 269.97790 * 3 2 1 19 19 H 1.08999 * 109.47023 * 59.99891 * 1 2 3 20 20 H 1.08997 * 109.47364 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47215 * 299.99899 * 1 2 3 22 22 H 1.09002 * 109.47215 * 240.00101 * 2 1 3 23 23 H 1.09000 * 109.47436 * 120.00765 * 2 1 3 24 24 H 1.08993 * 109.46964 * 35.02215 * 6 5 4 25 25 H 1.08999 * 109.47047 * 155.02376 * 6 5 4 26 26 H 1.00903 * 110.99970 * 303.95841 * 7 6 5 27 27 H 1.09003 * 109.47008 * 299.99462 * 8 7 6 28 28 H 1.08992 * 109.47142 * 59.99761 * 8 7 6 29 29 H 0.97003 * 119.99628 * 180.02562 * 12 11 9 30 30 H 1.08003 * 126.44526 * 179.97438 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2852 2.1359 1.0589 5 6 2.7147 3.3488 0.6676 6 6 3.1160 4.4848 1.5729 7 7 1.9214 5.2455 1.9631 8 6 2.2751 6.3639 2.8474 9 6 1.0269 7.1188 3.2262 10 1 0.0671 6.7999 2.8475 11 6 1.1106 8.2166 4.0562 12 7 2.2794 8.6052 4.5169 13 14 -0.4364 9.1528 4.5252 14 1 -1.6138 8.5184 3.8797 15 1 -0.6052 9.1225 6.0003 16 1 -0.3202 10.5612 4.0690 17 6 2.7214 3.3651 -0.6755 18 8 2.2928 2.1563 -1.0889 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 3.5997 4.0855 2.4643 25 1 3.8090 5.1413 1.0467 26 1 1.4193 5.5718 1.1509 27 1 2.7531 5.9780 3.7478 28 1 2.9620 7.0332 2.3297 29 1 2.3381 9.3773 5.1012 30 1 3.0140 4.1921 -1.3056 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819355121.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:31 Heat of formation + Delta-G solvation = -15.221733 kcal Electronic energy + Delta-G solvation = -13158.669960 eV Core-core repulsion = 10761.175355 eV Total energy + Delta-G solvation = -2397.494605 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.29109 -37.55509 -35.78453 -35.05760 -34.16517 -30.96266 -28.87573 -26.26804 -25.15992 -23.55740 -22.41317 -21.63384 -18.76994 -17.99082 -17.61051 -16.83013 -16.33265 -15.88155 -15.46009 -15.16144 -14.85099 -14.52892 -13.96956 -13.53338 -13.31044 -13.04806 -12.68403 -12.60883 -12.55437 -12.17092 -12.03733 -11.94952 -11.46758 -11.32991 -10.68680 -9.79214 -9.16728 -8.24340 -6.35733 0.49837 1.40425 1.41777 1.55399 1.64523 1.83590 2.39711 3.03329 3.09033 3.60411 3.92764 3.95425 4.21868 4.28396 4.41838 4.56518 4.61613 4.83905 4.93683 4.98394 5.06904 5.11453 5.21005 5.26550 5.39096 5.58491 5.98123 6.38575 6.64252 6.81853 6.85425 7.35114 8.87528 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.049265 B = 0.005610 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.222155 B = 4989.770340 C = 5301.101694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.023 4.023 3 C 0.185 3.815 4 N -0.507 5.507 5 C -0.027 4.027 6 C 0.141 3.859 7 N -0.686 5.686 8 C 0.209 3.791 9 C -0.537 4.537 10 H 0.061 0.939 11 C 0.003 3.997 12 N -0.933 5.933 13 Si 0.975 3.025 14 H -0.265 1.265 15 H -0.278 1.278 16 H -0.274 1.274 17 C -0.062 4.062 18 O -0.206 6.206 19 H 0.056 0.944 20 H 0.100 0.900 21 H 0.041 0.959 22 H 0.121 0.879 23 H 0.112 0.888 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.335 0.665 27 H 0.000 1.000 28 H -0.028 1.028 29 H 0.266 0.734 30 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.903 -14.504 -12.437 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.060 4.060 3 C -0.023 4.023 4 N -0.237 5.237 5 C -0.146 4.146 6 C 0.012 3.988 7 N -0.318 5.318 8 C 0.082 3.918 9 C -0.576 4.576 10 H 0.079 0.921 11 C -0.195 4.195 12 N -0.573 5.573 13 Si 0.799 3.201 14 H -0.189 1.189 15 H -0.203 1.203 16 H -0.199 1.199 17 C -0.133 4.133 18 O -0.093 6.093 19 H 0.075 0.925 20 H 0.119 0.881 21 H 0.061 0.939 22 H 0.139 0.861 23 H 0.130 0.870 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.153 0.847 27 H 0.018 0.982 28 H -0.011 1.011 29 H 0.075 0.925 30 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -1.044 -15.028 -11.218 18.783 hybrid contribution 0.191 1.763 -0.601 1.872 sum -0.853 -13.265 -11.819 17.788 Atomic orbital electron populations 1.21769 0.92643 1.04205 1.01859 1.20315 0.97108 0.81923 1.06700 1.27263 0.98894 0.98022 0.78108 1.70313 1.17092 1.04475 1.31816 1.21715 1.05215 0.94226 0.93429 1.20049 0.92113 0.90428 0.96257 1.60480 1.22735 1.27323 1.21242 1.19237 0.95222 0.86484 0.90907 1.21531 0.94212 1.11887 1.29929 0.92070 1.25944 0.99890 0.98098 0.95596 1.70090 1.25783 1.26972 1.34426 0.85253 0.78781 0.78056 0.77992 1.18917 1.20343 1.19911 1.25320 1.04424 0.87996 0.95584 1.84427 1.64140 1.22937 1.37761 0.92450 0.88134 0.93948 0.86117 0.87026 0.91799 0.92625 0.84740 0.98223 1.01065 0.92481 0.73555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.89 71.98 0.71 -1.63 16 2 C -0.02 -0.38 6.56 29.85 0.20 -0.19 16 3 C 0.18 5.09 7.60 88.34 0.67 5.76 16 4 N -0.51 -18.06 11.29 -291.99 -3.30 -21.36 16 5 C -0.03 -0.93 6.62 41.26 0.27 -0.66 16 6 C 0.14 5.49 6.23 85.56 0.53 6.02 16 7 N -0.69 -31.82 6.48 -521.98 -3.38 -35.20 16 8 C 0.21 11.58 5.44 85.56 0.47 12.05 16 9 C -0.54 -31.59 9.32 25.60 0.24 -31.35 16 10 H 0.06 3.54 7.81 -2.91 -0.02 3.51 16 11 C 0.00 0.18 5.46 84.66 0.46 0.64 16 12 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 13 Si 0.98 44.98 29.54 68.60 2.03 47.01 16 14 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 15 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 17 C -0.06 -1.68 12.08 66.92 0.81 -0.87 16 18 O -0.21 -5.50 10.77 -3.70 -0.04 -5.54 16 19 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 20 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 21 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 25 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.34 14.55 8.71 -89.69 -0.78 13.77 16 27 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 28 H -0.03 -1.63 8.14 -2.39 -0.02 -1.65 16 29 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 30 H 0.25 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -71.78 268.06 0.30 -71.48 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 0.35 Total: 10.49 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 4.36 Total: -10.23 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -6.39 Total: -113.21 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.04 Total: -5.54 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -71.78 0.30 -71.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819355121.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.260 kcal (2) G-P(sol) polarization free energy of solvation -71.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds