Wall clock time and date at job start Sun Mar 29 2020 21:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31434 * 1 3 3 Si 1.86803 * 119.99922 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00259 * 3 2 1 5 5 H 1.48494 * 109.46800 * 30.00307 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00009 * 3 2 1 7 7 C 1.38759 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99815 * 179.97438 * 7 2 1 9 9 O 1.34916 * 119.99518 * 0.27857 * 7 2 1 10 10 C 1.34315 * 116.99479 * 179.72609 * 9 7 2 11 11 O 1.21205 * 120.00396 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99641 * 179.97438 * 10 9 7 13 13 C 1.53946 * 113.57859 * 279.23740 * 12 10 9 14 14 C 1.53069 * 86.72580 * 220.69256 * 13 12 10 15 15 C 1.52912 * 121.17600 * 150.58653 * 14 13 12 16 16 C 1.53950 * 86.78108 * 100.75112 * 15 14 13 17 17 C 1.52908 * 121.06888 * 259.12048 * 14 13 12 18 18 C 1.52904 * 88.07198 * 24.83670 * 14 13 12 19 19 H 0.96996 * 120.00346 * 359.97438 * 1 2 3 20 20 H 1.08997 * 112.82645 * 50.32860 * 12 10 9 21 21 H 1.08995 * 113.66506 * 335.13852 * 13 12 10 22 22 H 1.09001 * 113.66017 * 106.19705 * 13 12 10 23 23 H 1.08995 * 113.66746 * 215.22658 * 15 14 13 24 24 H 1.09007 * 113.66216 * 346.28180 * 15 14 13 25 25 H 1.08993 * 113.58216 * 270.12770 * 16 15 14 26 26 H 1.09002 * 113.64841 * 139.35079 * 16 15 14 27 27 H 1.08997 * 113.66387 * 13.63761 * 17 14 13 28 28 H 1.09006 * 113.66081 * 144.68502 * 17 14 13 29 29 H 1.09003 * 113.66437 * 220.69827 * 18 14 13 30 30 H 1.08996 * 113.66519 * 89.63569 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4958 2.0465 -1.4001 5 1 1.4458 2.6526 0.7001 6 1 3.5459 1.4402 0.7001 7 6 2.0082 -1.2017 -0.0005 8 1 3.0882 -1.2016 -0.0010 9 8 1.3336 -2.3700 -0.0067 10 6 2.0651 -3.4964 -0.0126 11 8 3.2755 -3.4330 -0.0127 12 6 1.3810 -4.8392 -0.0192 13 6 0.9000 -5.2920 1.3714 14 6 1.3877 -6.6913 0.9876 15 6 1.8828 -7.6755 2.0479 16 6 0.5018 -8.3478 1.9442 17 6 0.4074 -7.7682 0.5212 18 6 2.3582 -6.0285 0.0095 19 1 -0.4850 0.8400 0.0004 20 1 0.6173 -4.9209 -0.7926 21 1 1.4576 -4.8449 2.1942 22 1 -0.1799 -5.2253 1.5039 23 1 2.7036 -8.3075 1.7090 24 1 2.0735 -7.2149 3.0173 25 1 -0.2364 -7.9361 2.6324 26 1 0.5425 -9.4367 1.9697 27 1 -0.5805 -7.3817 0.2707 28 1 0.8136 -8.4263 -0.2471 29 1 2.4417 -6.5492 -0.9445 30 1 3.3264 -5.7886 0.4489 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830631264.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:03 Heat of formation + Delta-G solvation = -47.596715 kcal Electronic energy + Delta-G solvation = -13730.276629 eV Core-core repulsion = 11299.085388 eV Total energy + Delta-G solvation = -2431.191241 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.40998 -38.53002 -35.35614 -34.06760 -32.06981 -26.39068 -25.67191 -25.42483 -24.47677 -21.78943 -19.22578 -17.75755 -17.65109 -16.64870 -15.41907 -15.13479 -14.87638 -14.31609 -14.14039 -13.26338 -12.72626 -12.59108 -12.04835 -11.90219 -11.77824 -11.52500 -11.15505 -10.81177 -10.72670 -10.40352 -10.30322 -10.06707 -9.90539 -9.73815 -9.68978 -8.83254 -8.52591 -6.35730 -4.03348 3.14522 3.21606 3.27948 3.58350 3.99813 4.48967 4.54895 4.74171 4.80933 4.90126 5.05756 5.14572 5.28905 5.53190 5.69482 5.76625 5.78114 5.93470 6.00216 6.07087 6.13186 6.20023 6.25762 6.44166 6.62288 6.71129 6.95104 7.45113 8.01694 8.79417 9.13406 9.95194 10.82596 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.071217 B = 0.006720 C = 0.006457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.070601 B = 4165.701216 C = 4335.661555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.382 4.382 8 H 0.094 0.906 9 O -0.215 6.215 10 C 0.407 3.593 11 O -0.558 6.558 12 C -0.095 4.095 13 C -0.094 4.094 14 C -0.109 4.109 15 C -0.127 4.127 16 C -0.139 4.139 17 C -0.117 4.117 18 C -0.103 4.103 19 H 0.268 0.732 20 H 0.109 0.891 21 H 0.087 0.913 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.371 -12.655 2.344 12.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.162 4.162 3 Si 0.767 3.233 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.459 4.459 8 H 0.112 0.888 9 O -0.122 6.122 10 C 0.253 3.747 11 O -0.455 6.455 12 C -0.115 4.115 13 C -0.131 4.131 14 C -0.109 4.109 15 C -0.164 4.164 16 C -0.177 4.177 17 C -0.154 4.154 18 C -0.141 4.141 19 H 0.078 0.922 20 H 0.127 0.873 21 H 0.105 0.895 22 H 0.094 0.906 23 H 0.099 0.901 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.253 -12.458 2.349 12.680 hybrid contribution 0.378 0.909 -0.092 0.989 sum 0.125 -11.549 2.257 11.768 Atomic orbital electron populations 1.69992 1.05985 1.27539 1.46915 1.25320 0.95785 0.98815 0.96327 0.85698 0.79048 0.79901 0.78690 1.19927 1.20365 1.19150 1.21223 0.92330 0.80107 1.52216 0.88848 1.83899 1.39389 1.13370 1.75495 1.23075 0.86550 0.87018 0.78040 1.90524 1.15832 1.88037 1.51128 1.22148 0.99404 0.89997 0.99919 1.22575 1.01378 0.93028 0.96118 1.22481 0.97639 0.93379 0.97374 1.22737 0.96844 0.97873 0.98980 1.22809 0.97866 0.99552 0.97431 1.22657 0.99112 0.96897 0.96783 1.22720 0.98084 0.94194 0.99059 0.92177 0.87319 0.89463 0.90577 0.90128 0.91448 0.90286 0.91844 0.91226 0.89980 0.91320 0.88657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.97 13.67 55.48 0.76 -25.21 16 2 C 0.04 1.19 5.49 -17.53 -0.10 1.09 16 3 Si 0.94 21.77 29.55 -169.99 -5.02 16.74 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.38 -11.66 9.64 30.92 0.30 -11.36 16 8 H 0.09 2.87 6.86 -52.49 -0.36 2.51 16 9 O -0.21 -6.36 9.75 -20.70 -0.20 -6.56 16 10 C 0.41 10.42 7.43 36.01 0.27 10.68 16 11 O -0.56 -15.49 15.14 -19.05 -0.29 -15.78 16 12 C -0.10 -1.82 4.26 -90.79 -0.39 -2.21 16 13 C -0.09 -1.54 7.40 -26.20 -0.19 -1.73 16 14 C -0.11 -1.49 1.11 -154.63 -0.17 -1.66 16 15 C -0.13 -1.49 7.84 -26.28 -0.21 -1.69 16 16 C -0.14 -1.44 8.08 -25.75 -0.21 -1.65 16 17 C -0.12 -1.33 7.84 -26.29 -0.21 -1.53 16 18 C -0.10 -1.67 7.16 -26.28 -0.19 -1.86 16 19 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 20 H 0.11 1.93 8.14 -51.93 -0.42 1.50 16 21 H 0.09 1.52 8.09 -51.93 -0.42 1.10 16 22 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 23 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.09 1.69 7.44 -51.93 -0.39 1.31 16 LS Contribution 259.66 15.07 3.91 3.91 Total: -1.00 -33.08 259.66 -6.04 -39.12 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -4.11 Total: -0.31 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -1.09 Total: -11.91 kcal Atomic # 7 Polarization: -25.97 SS G_CDS: 0.76 Total: -25.21 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.49 Total: -22.34 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -33.08 -6.04 -39.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830631264.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.479 kcal (2) G-P(sol) polarization free energy of solvation -33.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds