Wall clock time and date at job start Sun Mar 29 2020 21:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31434 * 1 3 3 Si 1.86803 * 119.99922 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00259 * 3 2 1 5 5 H 1.48494 * 109.46800 * 30.00307 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00009 * 3 2 1 7 7 C 1.38759 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99815 * 179.97438 * 7 2 1 9 9 O 1.34916 * 119.99518 * 0.27857 * 7 2 1 10 10 C 1.34315 * 116.99479 * 179.72609 * 9 7 2 11 11 O 1.21205 * 120.00396 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99641 * 179.97438 * 10 9 7 13 13 C 1.53946 * 113.57859 * 279.23740 * 12 10 9 14 14 C 1.53069 * 86.72580 * 220.69256 * 13 12 10 15 15 C 1.52912 * 121.17600 * 150.58653 * 14 13 12 16 16 C 1.53950 * 86.78108 * 100.75112 * 15 14 13 17 17 C 1.52908 * 121.06888 * 259.12048 * 14 13 12 18 18 C 1.52904 * 88.07198 * 24.83670 * 14 13 12 19 19 H 0.96996 * 120.00346 * 359.97438 * 1 2 3 20 20 H 1.08997 * 112.82645 * 50.32860 * 12 10 9 21 21 H 1.08995 * 113.66506 * 335.13852 * 13 12 10 22 22 H 1.09001 * 113.66017 * 106.19705 * 13 12 10 23 23 H 1.08995 * 113.66746 * 215.22658 * 15 14 13 24 24 H 1.09007 * 113.66216 * 346.28180 * 15 14 13 25 25 H 1.08993 * 113.58216 * 270.12770 * 16 15 14 26 26 H 1.09002 * 113.64841 * 139.35079 * 16 15 14 27 27 H 1.08997 * 113.66387 * 13.63761 * 17 14 13 28 28 H 1.09006 * 113.66081 * 144.68502 * 17 14 13 29 29 H 1.09003 * 113.66437 * 220.69827 * 18 14 13 30 30 H 1.08996 * 113.66519 * 89.63569 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4958 2.0465 -1.4001 5 1 1.4458 2.6526 0.7001 6 1 3.5459 1.4402 0.7001 7 6 2.0082 -1.2017 -0.0005 8 1 3.0882 -1.2016 -0.0010 9 8 1.3336 -2.3700 -0.0067 10 6 2.0651 -3.4964 -0.0126 11 8 3.2755 -3.4330 -0.0127 12 6 1.3810 -4.8392 -0.0192 13 6 0.9000 -5.2920 1.3714 14 6 1.3877 -6.6913 0.9876 15 6 1.8828 -7.6755 2.0479 16 6 0.5018 -8.3478 1.9442 17 6 0.4074 -7.7682 0.5212 18 6 2.3582 -6.0285 0.0095 19 1 -0.4850 0.8400 0.0004 20 1 0.6173 -4.9209 -0.7926 21 1 1.4576 -4.8449 2.1942 22 1 -0.1799 -5.2253 1.5039 23 1 2.7036 -8.3075 1.7090 24 1 2.0735 -7.2149 3.0173 25 1 -0.2364 -7.9361 2.6324 26 1 0.5425 -9.4367 1.9697 27 1 -0.5805 -7.3817 0.2707 28 1 0.8136 -8.4263 -0.2471 29 1 2.4417 -6.5492 -0.9445 30 1 3.3264 -5.7886 0.4489 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830631264.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:03 Heat of formation + Delta-G solvation = -67.477854 kcal Electronic energy + Delta-G solvation = -13731.138740 eV Core-core repulsion = 11299.085388 eV Total energy + Delta-G solvation = -2432.053352 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.81224 -40.39483 -37.33686 -35.49688 -34.30779 -28.27705 -26.81520 -26.62229 -26.17271 -23.11800 -20.94181 -19.90213 -18.93033 -18.50272 -16.93481 -16.75790 -16.29749 -16.05539 -15.92417 -14.97324 -14.14182 -13.76541 -13.62621 -13.41720 -13.28568 -12.98656 -12.85732 -12.37612 -12.20459 -12.06680 -11.89718 -11.75181 -11.24369 -11.02563 -10.98917 -10.72099 -10.64579 -8.55936 -6.36530 1.28653 1.32138 1.49897 1.62232 2.11350 2.78004 2.94152 3.40780 3.55399 3.64015 3.76390 3.93157 4.01369 4.38821 4.60710 4.70128 4.76481 4.79059 4.89281 4.94507 4.97616 5.06368 5.11179 5.16685 5.17145 5.34821 5.57740 5.61989 5.81493 6.64972 6.88888 7.77016 8.64977 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.071217 B = 0.006720 C = 0.006457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.070601 B = 4165.701216 C = 4335.661555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.004 4.004 3 Si 1.018 2.982 4 H -0.259 1.259 5 H -0.258 1.258 6 H -0.265 1.265 7 C -0.426 4.426 8 H 0.078 0.922 9 O -0.245 6.245 10 C 0.402 3.598 11 O -0.586 6.586 12 C -0.104 4.104 13 C -0.094 4.094 14 C -0.101 4.101 15 C -0.128 4.128 16 C -0.130 4.130 17 C -0.112 4.112 18 C -0.099 4.099 19 H 0.279 0.721 20 H 0.125 0.875 21 H 0.068 0.932 22 H 0.087 0.913 23 H 0.094 0.906 24 H 0.062 0.938 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.714 -13.614 2.379 13.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.204 4.204 3 Si 0.837 3.163 4 H -0.183 1.183 5 H -0.182 1.182 6 H -0.189 1.189 7 C -0.502 4.502 8 H 0.096 0.904 9 O -0.153 6.153 10 C 0.251 3.749 11 O -0.484 6.484 12 C -0.123 4.123 13 C -0.132 4.132 14 C -0.101 4.101 15 C -0.165 4.165 16 C -0.167 4.167 17 C -0.149 4.149 18 C -0.137 4.137 19 H 0.089 0.911 20 H 0.143 0.857 21 H 0.087 0.913 22 H 0.106 0.894 23 H 0.112 0.888 24 H 0.081 0.919 25 H 0.098 0.902 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.118 0.882 29 H 0.108 0.892 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.609 -13.447 2.385 13.671 hybrid contribution 0.495 1.147 -0.105 1.254 sum -0.114 -12.300 2.279 12.510 Atomic orbital electron populations 1.70071 1.07669 1.29416 1.46880 1.26565 0.96910 1.02374 0.94582 0.84623 0.77639 0.74449 0.79596 1.18350 1.18161 1.18898 1.21431 0.92089 0.81489 1.55151 0.90385 1.83925 1.40436 1.14285 1.76657 1.24463 0.86620 0.88169 0.75684 1.90482 1.17333 1.88635 1.51982 1.22511 1.00734 0.86727 1.02295 1.22576 1.01847 0.95025 0.93741 1.22439 0.97524 0.92655 0.97469 1.22808 0.98394 0.97363 0.97918 1.22781 0.96531 1.00802 0.96580 1.22731 0.98427 0.95749 0.97965 1.22717 0.96993 0.93081 1.00865 0.91133 0.85695 0.91329 0.89416 0.88778 0.91942 0.90170 0.89689 0.90903 0.88228 0.89224 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.69 13.67 21.63 0.30 -54.40 16 2 C 0.00 -0.25 5.49 84.88 0.47 0.22 16 3 Si 1.02 44.56 29.55 68.60 2.03 46.59 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 6 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 7 C -0.43 -26.94 9.64 67.94 0.66 -26.28 16 8 H 0.08 5.02 6.86 -2.91 -0.02 5.00 16 9 O -0.24 -15.13 9.75 14.87 0.14 -14.99 16 10 C 0.40 21.40 7.43 71.24 0.53 21.93 16 11 O -0.59 -33.93 15.14 20.79 0.31 -33.62 16 12 C -0.10 -3.98 4.26 -10.90 -0.05 -4.02 16 13 C -0.09 -3.08 7.40 30.94 0.23 -2.86 16 14 C -0.10 -2.57 1.11 -52.26 -0.06 -2.63 16 15 C -0.13 -2.67 7.84 30.89 0.24 -2.42 16 16 C -0.13 -2.22 8.08 31.23 0.25 -1.97 16 17 C -0.11 -2.14 7.84 30.88 0.24 -1.90 16 18 C -0.10 -3.12 7.16 30.89 0.22 -2.90 16 19 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 20 H 0.13 4.37 8.14 -2.39 -0.02 4.35 16 21 H 0.07 2.47 8.09 -2.39 -0.02 2.45 16 22 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 23 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 24 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 25 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.07 2.64 7.44 -2.39 -0.02 2.62 16 Total: -1.00 -73.74 259.66 6.63 -67.10 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 1.12 Total: 12.13 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: 2.73 Total: -22.83 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: 0.30 Total: -54.40 kcal Atomic # 8 Polarization: -49.06 SS G_CDS: 0.46 Total: -48.60 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -73.74 6.63 -67.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830631264.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.374 kcal (2) G-P(sol) polarization free energy of solvation -73.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds