Wall clock time and date at job start Sun Mar 29 2020 21:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86809 * 120.00129 * 2 1 4 4 H 1.48492 * 109.46894 * 270.00334 * 3 2 1 5 5 H 1.48499 * 109.46806 * 29.99951 * 3 2 1 6 6 H 1.48500 * 109.47203 * 149.99750 * 3 2 1 7 7 C 1.38830 * 120.00359 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99437 * 359.97438 * 7 2 1 9 9 O 1.34836 * 120.00235 * 180.02562 * 7 2 1 10 10 C 1.34805 * 116.99711 * 180.02562 * 9 7 2 11 11 O 1.21573 * 120.00262 * 359.97438 * 10 9 7 12 12 C 1.46880 * 119.99961 * 180.02562 * 10 9 7 13 13 C 1.33147 * 120.00097 * 180.27426 * 12 10 9 14 14 C 1.50702 * 120.00267 * 179.71854 * 13 12 10 15 15 C 1.54257 * 110.03533 * 237.90624 * 14 13 12 16 16 C 1.54967 * 104.16357 * 217.13261 * 15 14 13 17 17 C 1.54891 * 102.77326 * 37.89068 * 16 15 14 18 18 C 1.53876 * 110.03208 * 120.68559 * 14 13 12 19 19 H 0.96999 * 119.99738 * 359.97438 * 1 2 3 20 20 H 1.08002 * 119.99552 * 359.97438 * 12 10 9 21 21 H 1.08002 * 120.00287 * 359.72094 * 13 12 10 22 22 H 1.09002 * 110.01441 * 359.29943 * 14 13 12 23 23 H 1.08996 * 110.48899 * 335.78593 * 15 14 13 24 24 H 1.09005 * 110.48562 * 98.42792 * 15 14 13 25 25 H 1.08998 * 110.72179 * 279.58265 * 16 15 14 26 26 H 1.08996 * 110.76744 * 156.21677 * 16 15 14 27 27 H 1.09001 * 110.48630 * 203.40771 * 17 16 15 28 28 H 1.08998 * 110.60242 * 80.81266 * 17 16 15 29 29 H 1.08996 * 110.03572 * 238.57213 * 18 14 13 30 30 H 1.09005 * 110.03510 * 0.02562 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0464 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0083 -1.2023 0.0005 8 1 1.4682 -2.1376 0.0014 9 8 3.3566 -1.2022 0.0011 10 6 3.9686 -2.4034 0.0010 11 8 3.3065 -3.4230 0.0010 12 6 5.4354 -2.4803 0.0021 13 6 6.0399 -3.6666 -0.0034 14 6 7.5448 -3.7455 -0.0087 15 6 8.0281 -4.5385 -1.2404 16 6 9.2447 -5.3444 -0.7191 17 6 8.8017 -5.7476 0.7093 18 6 8.0367 -4.5136 1.2307 19 1 -0.4850 0.8401 0.0004 20 1 6.0235 -1.5745 0.0026 21 1 5.4517 -4.5724 -0.0042 22 1 7.9709 -2.7423 -0.0196 23 1 7.2464 -5.2122 -1.5912 24 1 8.3327 -3.8587 -2.0363 25 1 10.1361 -4.7181 -0.6846 26 1 9.4154 -6.2278 -1.3343 27 1 9.6707 -5.9502 1.3353 28 1 8.1455 -6.6173 0.6762 29 1 8.7022 -3.8835 1.8207 30 1 7.1869 -4.8297 1.8357 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830793869.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:13 Heat of formation + Delta-G solvation = -84.522493 kcal Electronic energy + Delta-G solvation = -13220.683334 eV Core-core repulsion = 10787.890871 eV Total energy + Delta-G solvation = -2432.792463 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.14088 -38.32615 -35.45995 -32.94344 -32.28954 -28.76131 -28.34585 -25.59076 -22.47211 -20.76486 -19.79059 -18.92959 -17.92893 -16.84162 -15.80654 -15.24681 -14.73060 -14.55990 -14.02768 -13.45685 -13.42991 -12.45888 -12.26234 -11.87732 -11.59534 -11.28535 -11.22470 -11.15917 -11.08198 -10.76446 -10.53256 -10.50703 -10.35507 -9.69377 -9.16248 -8.99005 -8.66751 -6.37422 -4.08976 1.79670 3.22107 3.25489 3.39130 3.97482 4.18943 4.26958 4.52042 4.59273 4.75853 5.15147 5.27431 5.35287 5.41390 5.46445 5.56032 5.56913 5.64833 5.79325 5.83524 5.96640 6.13611 6.20983 6.23042 6.31421 6.75849 6.93723 7.76515 8.04774 8.66464 9.01577 9.72747 10.70916 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.065463 B = 0.005855 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.623041 B = 4781.393914 C = 4978.020537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.376 4.376 8 H 0.110 0.890 9 O -0.247 6.247 10 C 0.434 3.566 11 O -0.545 6.545 12 C -0.160 4.160 13 C -0.089 4.089 14 C -0.066 4.066 15 C -0.118 4.118 16 C -0.125 4.125 17 C -0.125 4.125 18 C -0.118 4.118 19 H 0.280 0.720 20 H 0.125 0.875 21 H 0.125 0.875 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.088 -5.840 -0.023 19.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.452 4.452 8 H 0.127 0.873 9 O -0.156 6.156 10 C 0.283 3.717 11 O -0.442 6.442 12 C -0.179 4.179 13 C -0.108 4.108 14 C -0.085 4.085 15 C -0.155 4.155 16 C -0.163 4.163 17 C -0.163 4.163 18 C -0.156 4.156 19 H 0.090 0.910 20 H 0.143 0.857 21 H 0.143 0.857 22 H 0.097 0.903 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 17.703 -5.938 -0.015 18.672 hybrid contribution 0.059 0.835 0.002 0.837 sum 17.762 -5.103 -0.013 18.481 Atomic orbital electron populations 1.69594 1.05773 1.28481 1.47274 1.24583 0.95028 0.98751 0.95602 0.86194 0.80331 0.81351 0.78966 1.19807 1.20709 1.18349 1.20709 0.76414 0.96983 1.51090 0.87293 1.83587 1.23817 1.31391 1.76759 1.20918 0.88954 0.82479 0.79366 1.90675 1.67072 1.36092 1.50391 1.22025 0.91663 0.98821 1.05417 1.23602 0.95051 0.98009 0.94132 1.20972 0.91893 1.00178 0.95415 1.22437 0.97573 0.98678 0.96819 1.22519 0.97865 0.99612 0.96256 1.22381 0.99601 0.98034 0.96269 1.22196 0.99876 0.96504 0.97003 0.90979 0.85715 0.85720 0.90255 0.91016 0.91398 0.91577 0.91637 0.91843 0.91537 0.91565 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.22 13.96 55.49 0.77 -25.44 16 2 C 0.06 1.88 5.50 -17.52 -0.10 1.78 16 3 Si 0.91 21.81 28.62 -169.99 -4.86 16.95 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.26 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.38 -11.56 10.11 30.95 0.31 -11.24 16 8 H 0.11 3.67 7.09 -52.48 -0.37 3.30 16 9 O -0.25 -6.85 8.58 -21.78 -0.19 -7.03 16 10 C 0.43 10.87 7.84 34.23 0.27 11.14 16 11 O -0.55 -15.20 15.47 -19.32 -0.30 -15.50 16 12 C -0.16 -2.97 9.76 -37.86 -0.37 -3.33 16 13 C -0.09 -1.39 7.99 -36.08 -0.29 -1.67 16 14 C -0.07 -0.77 3.24 -90.66 -0.29 -1.06 16 15 C -0.12 -1.21 6.36 -25.04 -0.16 -1.37 16 16 C -0.13 -1.07 6.91 -24.70 -0.17 -1.24 16 17 C -0.13 -1.11 6.83 -25.07 -0.17 -1.29 16 18 C -0.12 -1.22 6.45 -25.61 -0.17 -1.39 16 19 H 0.28 7.65 8.31 -40.82 -0.34 7.31 16 20 H 0.12 1.99 7.88 -52.49 -0.41 1.58 16 21 H 0.13 2.09 7.49 -52.49 -0.39 1.70 16 22 H 0.08 0.87 7.85 -51.93 -0.41 0.46 16 23 H 0.07 0.78 7.85 -51.93 -0.41 0.38 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.79 7.67 -51.93 -0.40 0.39 16 LS Contribution 261.92 15.07 3.95 3.95 Total: -1.00 -32.77 261.92 -5.83 -38.59 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -4.06 Total: -1.83 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -1.13 Total: -9.68 kcal Atomic # 7 Polarization: -26.22 SS G_CDS: 0.77 Total: -25.44 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.49 Total: -22.53 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.86 Total: 16.95 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.77 -5.83 -38.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830793869.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.931 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds