Wall clock time and date at job start Sun Mar 29 2020 21:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86809 * 120.00129 * 2 1 4 4 H 1.48492 * 109.46894 * 270.00334 * 3 2 1 5 5 H 1.48499 * 109.46806 * 29.99951 * 3 2 1 6 6 H 1.48500 * 109.47203 * 149.99750 * 3 2 1 7 7 C 1.38830 * 120.00359 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99437 * 359.97438 * 7 2 1 9 9 O 1.34836 * 120.00235 * 180.02562 * 7 2 1 10 10 C 1.34805 * 116.99711 * 180.02562 * 9 7 2 11 11 O 1.21573 * 120.00262 * 359.97438 * 10 9 7 12 12 C 1.46880 * 119.99961 * 180.02562 * 10 9 7 13 13 C 1.33147 * 120.00097 * 180.27426 * 12 10 9 14 14 C 1.50702 * 120.00267 * 179.71854 * 13 12 10 15 15 C 1.54257 * 110.03533 * 237.90624 * 14 13 12 16 16 C 1.54967 * 104.16357 * 217.13261 * 15 14 13 17 17 C 1.54891 * 102.77326 * 37.89068 * 16 15 14 18 18 C 1.53876 * 110.03208 * 120.68559 * 14 13 12 19 19 H 0.96999 * 119.99738 * 359.97438 * 1 2 3 20 20 H 1.08002 * 119.99552 * 359.97438 * 12 10 9 21 21 H 1.08002 * 120.00287 * 359.72094 * 13 12 10 22 22 H 1.09002 * 110.01441 * 359.29943 * 14 13 12 23 23 H 1.08996 * 110.48899 * 335.78593 * 15 14 13 24 24 H 1.09005 * 110.48562 * 98.42792 * 15 14 13 25 25 H 1.08998 * 110.72179 * 279.58265 * 16 15 14 26 26 H 1.08996 * 110.76744 * 156.21677 * 16 15 14 27 27 H 1.09001 * 110.48630 * 203.40771 * 17 16 15 28 28 H 1.08998 * 110.60242 * 80.81266 * 17 16 15 29 29 H 1.08996 * 110.03572 * 238.57213 * 18 14 13 30 30 H 1.09005 * 110.03510 * 0.02562 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0464 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0083 -1.2023 0.0005 8 1 1.4682 -2.1376 0.0014 9 8 3.3566 -1.2022 0.0011 10 6 3.9686 -2.4034 0.0010 11 8 3.3065 -3.4230 0.0010 12 6 5.4354 -2.4803 0.0021 13 6 6.0399 -3.6666 -0.0034 14 6 7.5448 -3.7455 -0.0087 15 6 8.0281 -4.5385 -1.2404 16 6 9.2447 -5.3444 -0.7191 17 6 8.8017 -5.7476 0.7093 18 6 8.0367 -4.5136 1.2307 19 1 -0.4850 0.8401 0.0004 20 1 6.0235 -1.5745 0.0026 21 1 5.4517 -4.5724 -0.0042 22 1 7.9709 -2.7423 -0.0196 23 1 7.2464 -5.2122 -1.5912 24 1 8.3327 -3.8587 -2.0363 25 1 10.1361 -4.7181 -0.6846 26 1 9.4154 -6.2278 -1.3343 27 1 9.6707 -5.9502 1.3353 28 1 8.1455 -6.6173 0.6762 29 1 8.7022 -3.8835 1.8207 30 1 7.1869 -4.8297 1.8357 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830793869.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:13 Heat of formation + Delta-G solvation = -104.666560 kcal Electronic energy + Delta-G solvation = -13221.556846 eV Core-core repulsion = 10787.890871 eV Total energy + Delta-G solvation = -2433.665975 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.14873 -39.31020 -37.52226 -34.56745 -34.28149 -29.56602 -29.53404 -27.60542 -24.10539 -21.48794 -21.11505 -20.40789 -20.08813 -18.70701 -17.13235 -16.69558 -16.56660 -16.00006 -15.76895 -14.65664 -14.47733 -14.19674 -14.18929 -13.41476 -13.01800 -12.69251 -12.43252 -12.32396 -12.17488 -11.93516 -11.88219 -11.86672 -11.49646 -11.37849 -11.19702 -10.87401 -10.37984 -8.59089 -6.44475 0.24461 1.32110 1.37843 1.54314 2.10539 2.25593 2.46597 2.91312 3.67843 3.79358 3.80972 4.11646 4.31186 4.46915 4.58603 4.65036 4.66545 4.69752 4.87330 5.01714 5.12368 5.24556 5.27242 5.35671 5.38965 5.48670 5.54338 5.54648 5.87764 6.48377 6.77265 7.54799 8.54009 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.065463 B = 0.005855 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.623041 B = 4781.393914 C = 4978.020537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.016 3.984 3 Si 0.987 3.013 4 H -0.257 1.257 5 H -0.262 1.262 6 H -0.251 1.251 7 C -0.413 4.413 8 H 0.055 0.945 9 O -0.253 6.253 10 C 0.434 3.566 11 O -0.586 6.586 12 C -0.190 4.190 13 C -0.042 4.042 14 C -0.066 4.066 15 C -0.120 4.120 16 C -0.119 4.119 17 C -0.125 4.125 18 C -0.119 4.119 19 H 0.291 0.709 20 H 0.159 0.841 21 H 0.107 0.893 22 H 0.099 0.901 23 H 0.059 0.941 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.567 -4.715 -0.055 22.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.185 4.185 3 Si 0.806 3.194 4 H -0.182 1.182 5 H -0.186 1.186 6 H -0.175 1.175 7 C -0.488 4.488 8 H 0.073 0.927 9 O -0.162 6.162 10 C 0.285 3.715 11 O -0.485 6.485 12 C -0.209 4.209 13 C -0.061 4.061 14 C -0.085 4.085 15 C -0.158 4.158 16 C -0.156 4.156 17 C -0.163 4.163 18 C -0.157 4.157 19 H 0.101 0.899 20 H 0.177 0.823 21 H 0.125 0.875 22 H 0.117 0.883 23 H 0.078 0.922 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 21.180 -4.843 -0.048 21.726 hybrid contribution -0.965 0.217 0.013 0.989 sum 20.215 -4.625 -0.035 20.737 Atomic orbital electron populations 1.69686 1.07659 1.30445 1.47585 1.25654 0.96038 1.02858 0.93913 0.85028 0.78958 0.75394 0.79991 1.18176 1.18586 1.17466 1.20378 0.77880 0.95870 1.54714 0.92727 1.83590 1.21992 1.32537 1.78128 1.22314 0.91493 0.81255 0.76468 1.90648 1.68735 1.37218 1.51873 1.21996 0.87430 1.01339 1.10112 1.24000 0.97617 0.96262 0.88213 1.21147 0.88279 1.02013 0.97030 1.22475 0.98141 0.98776 0.96375 1.22513 0.97362 0.99924 0.95798 1.22402 0.99950 0.97052 0.96858 1.22226 0.99870 0.97339 0.96246 0.89869 0.82311 0.87480 0.88307 0.92205 0.90320 0.90117 0.90683 0.90145 0.92111 0.89813 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.50 13.96 21.64 0.30 -56.20 16 2 C 0.02 0.93 5.50 84.90 0.47 1.40 16 3 Si 0.99 44.58 28.62 68.60 1.96 46.54 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.25 -10.92 7.11 99.48 0.71 -10.21 16 7 C -0.41 -26.61 10.11 67.96 0.69 -25.93 16 8 H 0.05 4.00 7.09 -2.91 -0.02 3.98 16 9 O -0.25 -14.39 8.58 10.79 0.09 -14.29 16 10 C 0.43 22.34 7.84 70.08 0.55 22.89 16 11 O -0.59 -34.43 15.47 19.60 0.30 -34.13 16 12 C -0.19 -6.83 9.76 23.39 0.23 -6.60 16 13 C -0.04 -1.25 7.99 24.54 0.20 -1.05 16 14 C -0.07 -1.34 3.24 -10.82 -0.04 -1.37 16 15 C -0.12 -2.11 6.36 31.69 0.20 -1.90 16 16 C -0.12 -1.59 6.91 31.91 0.22 -1.37 16 17 C -0.13 -1.82 6.83 31.67 0.22 -1.60 16 18 C -0.12 -2.11 6.45 31.32 0.20 -1.90 16 19 H 0.29 16.09 8.31 -92.71 -0.77 15.32 16 20 H 0.16 4.61 7.88 -2.91 -0.02 4.59 16 21 H 0.11 3.59 7.49 -2.91 -0.02 3.57 16 22 H 0.10 1.72 7.85 -2.39 -0.02 1.70 16 23 H 0.06 1.19 7.85 -2.39 -0.02 1.17 16 24 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 1.14 7.67 -2.38 -0.02 1.13 16 Total: -1.00 -75.34 261.92 6.71 -68.64 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: 1.11 Total: 6.88 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 2.93 Total: -17.44 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.30 Total: -56.20 kcal Atomic # 8 Polarization: -48.82 SS G_CDS: 0.40 Total: -48.42 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.96 Total: 46.54 kcal Total: -75.34 6.71 -68.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830793869.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.031 kcal (2) G-P(sol) polarization free energy of solvation -75.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds