Wall clock time and date at job start Sun Mar 29 2020 21:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31396 * 1 3 3 Si 1.86808 * 119.99760 * 2 1 4 4 H 1.48495 * 109.47058 * 269.99988 * 3 2 1 5 5 H 1.48501 * 109.47005 * 30.00455 * 3 2 1 6 6 H 1.48498 * 109.47065 * 150.00104 * 3 2 1 7 7 C 1.38824 * 120.00598 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00584 * 179.97438 * 7 2 1 9 9 O 1.34842 * 119.99749 * 359.97438 * 7 2 1 10 10 C 1.34803 * 117.00260 * 180.02562 * 9 7 2 11 11 O 1.21578 * 120.00137 * 0.02562 * 10 9 7 12 12 C 1.46873 * 120.00361 * 179.97438 * 10 9 7 13 13 C 1.33154 * 120.00295 * 186.52377 * 12 10 9 14 14 C 1.50695 * 119.99724 * 17.82912 * 13 12 10 15 15 C 1.54262 * 110.03153 * 250.99633 * 14 13 12 16 16 C 1.54889 * 104.19721 * 217.10786 * 15 14 13 17 17 C 1.54884 * 102.75045 * 37.94148 * 16 15 14 18 18 C 1.53874 * 110.03143 * 133.83092 * 14 13 12 19 19 H 0.97004 * 120.00867 * 359.97438 * 1 2 3 20 20 H 1.08005 * 119.99826 * 6.52664 * 12 10 9 21 21 H 1.07994 * 119.99890 * 197.82739 * 13 12 10 22 22 H 1.08996 * 110.02246 * 12.43740 * 14 13 12 23 23 H 1.09007 * 110.48914 * 335.78598 * 15 14 13 24 24 H 1.09001 * 110.49253 * 98.43048 * 15 14 13 25 25 H 1.08997 * 110.75634 * 279.62679 * 16 15 14 26 26 H 1.09005 * 110.76093 * 156.25410 * 16 15 14 27 27 H 1.08998 * 110.49252 * 203.38049 * 17 16 15 28 28 H 1.09007 * 110.60197 * 80.79307 * 17 16 15 29 29 H 1.09002 * 110.03318 * 238.56596 * 18 14 13 30 30 H 1.09000 * 110.03163 * 359.94983 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 2.4954 2.0465 -1.4000 5 1 1.4454 2.6527 0.7001 6 1 3.5455 1.4403 0.7000 7 6 2.0082 -1.2022 -0.0005 8 1 3.0882 -1.2022 -0.0010 9 8 1.3341 -2.3700 -0.0005 10 6 2.0683 -3.5005 -0.0005 11 8 3.2824 -3.4369 -0.0001 12 6 1.4016 -4.8092 0.0000 13 6 2.1202 -5.9225 0.1310 14 6 3.5249 -5.8532 0.6722 15 6 4.5399 -6.1355 -0.4547 16 6 5.6597 -6.9509 0.2382 17 6 4.8694 -7.8527 1.2185 18 6 3.7344 -6.9450 1.7361 19 1 -0.4851 0.8400 0.0004 20 1 0.3284 -4.8686 -0.1059 21 1 1.6964 -6.8751 -0.1505 22 1 3.7101 -4.8700 1.1048 23 1 4.0760 -6.7219 -1.2479 24 1 4.9381 -5.2019 -0.8523 25 1 6.3380 -6.2923 0.7806 26 1 6.2041 -7.5544 -0.4882 27 1 5.5078 -8.1723 2.0421 28 1 4.4586 -8.7177 0.6977 29 1 4.0220 -6.4917 2.6847 30 1 2.8197 -7.5244 1.8615 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830793873.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:15 Heat of formation + Delta-G solvation = -94.889647 kcal Electronic energy + Delta-G solvation = -13624.605376 eV Core-core repulsion = 11191.363359 eV Total energy + Delta-G solvation = -2433.242017 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.07996 -39.21158 -37.20342 -34.31391 -34.08159 -29.52853 -29.28489 -27.50806 -24.28648 -21.49186 -21.27508 -20.41127 -19.89655 -18.24686 -16.80823 -16.60702 -16.39753 -16.17076 -15.44491 -14.73971 -14.33769 -14.18051 -13.73551 -13.48220 -13.19124 -12.64370 -12.43442 -12.17956 -12.03156 -11.93043 -11.89703 -11.70425 -11.57992 -11.41525 -10.73800 -10.50523 -10.09942 -8.55238 -6.32364 0.33252 1.32381 1.39381 1.50430 2.13452 2.21199 2.95066 3.01414 3.76827 3.80466 3.87257 4.28963 4.44089 4.58565 4.67508 4.69387 4.78507 4.87440 4.90632 5.04568 5.12658 5.14017 5.18353 5.34037 5.39141 5.51892 5.54509 5.78722 5.87215 6.71686 6.89963 7.81414 8.66300 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.057380 B = 0.006857 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.858429 B = 4082.365788 C = 4379.040988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.008 4.008 3 Si 1.019 2.981 4 H -0.259 1.259 5 H -0.259 1.259 6 H -0.264 1.264 7 C -0.418 4.418 8 H 0.081 0.919 9 O -0.250 6.250 10 C 0.418 3.582 11 O -0.567 6.567 12 C -0.209 4.209 13 C -0.036 4.036 14 C -0.097 4.097 15 C -0.106 4.106 16 C -0.122 4.122 17 C -0.114 4.114 18 C -0.115 4.115 19 H 0.279 0.721 20 H 0.146 0.854 21 H 0.174 0.826 22 H 0.066 0.934 23 H 0.074 0.926 24 H 0.037 0.963 25 H 0.054 0.946 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.079 -13.522 1.269 14.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.208 4.208 3 Si 0.838 3.162 4 H -0.184 1.184 5 H -0.183 1.183 6 H -0.188 1.188 7 C -0.494 4.494 8 H 0.099 0.901 9 O -0.159 6.159 10 C 0.269 3.731 11 O -0.466 6.466 12 C -0.227 4.227 13 C -0.054 4.054 14 C -0.115 4.115 15 C -0.143 4.143 16 C -0.160 4.160 17 C -0.152 4.152 18 C -0.152 4.152 19 H 0.088 0.912 20 H 0.164 0.836 21 H 0.191 0.809 22 H 0.084 0.916 23 H 0.093 0.907 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.183 -13.343 1.278 14.761 hybrid contribution 0.080 1.155 -0.057 1.159 sum 6.262 -12.188 1.221 13.757 Atomic orbital electron populations 1.70063 1.07770 1.29390 1.47017 1.26594 0.96896 1.02461 0.94806 0.84609 0.77628 0.74427 0.79559 1.18384 1.18276 1.18818 1.21437 0.92156 0.81367 1.54392 0.90101 1.83979 1.40417 1.14401 1.77077 1.22367 0.86289 0.87096 0.77299 1.90545 1.16202 1.88317 1.51548 1.22106 1.01308 0.88474 1.10851 1.24175 0.94997 0.97744 0.88449 1.21414 0.92510 1.00691 0.96934 1.22208 0.95826 0.99094 0.97193 1.22510 0.96900 0.97930 0.98653 1.22352 0.96304 0.97660 0.98863 1.22233 1.00146 0.95947 0.96920 0.91175 0.83631 0.80892 0.91550 0.90737 0.94448 0.92680 0.89935 0.90588 0.89819 0.92574 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.32 13.67 21.64 0.30 -55.03 16 2 C -0.01 -0.46 5.50 84.90 0.47 0.01 16 3 Si 1.02 44.77 29.55 68.60 2.03 46.80 16 4 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.42 -26.42 9.65 67.96 0.66 -25.76 16 8 H 0.08 5.16 6.86 -2.91 -0.02 5.14 16 9 O -0.25 -15.59 9.75 10.74 0.10 -15.49 16 10 C 0.42 22.26 7.60 70.08 0.53 22.79 16 11 O -0.57 -31.47 12.10 19.58 0.24 -31.23 16 12 C -0.21 -8.16 10.12 23.39 0.24 -7.93 16 13 C -0.04 -1.07 8.44 24.54 0.21 -0.87 16 14 C -0.10 -3.11 2.33 -10.82 -0.03 -3.14 16 15 C -0.11 -3.13 6.16 31.67 0.20 -2.93 16 16 C -0.12 -2.79 6.91 31.88 0.22 -2.57 16 17 C -0.11 -2.15 6.83 31.67 0.22 -1.94 16 18 C -0.11 -2.71 6.45 31.32 0.20 -2.51 16 19 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 20 H 0.15 5.07 8.06 -2.91 -0.02 5.05 16 21 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 22 H 0.07 2.82 5.36 -2.39 -0.01 2.81 16 23 H 0.07 1.92 7.85 -2.38 -0.02 1.90 16 24 H 0.04 1.36 7.68 -2.39 -0.02 1.34 16 25 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 1.62 7.67 -2.39 -0.02 1.60 16 Total: -1.00 -74.33 256.92 6.69 -67.63 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 1.12 Total: 12.16 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: 2.91 Total: -24.84 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 0.30 Total: -55.03 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: 0.34 Total: -46.72 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -74.33 6.69 -67.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830793873.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.255 kcal (2) G-P(sol) polarization free energy of solvation -74.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds