Wall clock time and date at job start Sun Mar 29 2020 21:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86803 * 120.00212 * 2 1 4 4 H 1.48494 * 109.47398 * 270.00721 * 3 2 1 5 5 H 1.48507 * 109.46734 * 30.00649 * 3 2 1 6 6 H 1.48497 * 109.47010 * 150.00400 * 3 2 1 7 7 C 1.38755 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00068 * 359.97438 * 7 2 1 9 9 O 1.34922 * 120.00272 * 179.97438 * 7 2 1 10 10 C 1.34310 * 117.00349 * 179.97438 * 9 7 2 11 11 O 1.21213 * 119.99644 * 0.02562 * 10 9 7 12 12 C 1.50693 * 119.99805 * 180.27868 * 10 9 7 13 13 C 1.53004 * 109.47220 * 179.72718 * 12 10 9 14 14 H 1.09002 * 110.43555 * 54.29288 * 13 12 10 15 15 C 1.54891 * 110.48338 * 291.76179 * 13 12 10 16 16 C 1.54892 * 102.74820 * 203.37833 * 15 13 12 17 17 C 1.54268 * 104.19723 * 37.93628 * 16 15 13 18 18 H 1.09000 * 117.41469 * 117.58265 * 17 16 15 19 19 C 1.52998 * 118.20005 * 272.21899 * 17 16 15 20 20 C 1.52852 * 60.50341 * 93.59016 * 19 17 16 21 21 H 1.08995 * 119.73215 * 111.15190 * 20 19 17 22 22 H 0.97002 * 119.99938 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47536 * 299.72288 * 12 10 9 24 24 H 1.08994 * 109.47555 * 59.72727 * 12 10 9 25 25 H 1.09005 * 110.75013 * 321.68534 * 15 13 12 26 26 H 1.08993 * 110.76263 * 84.87824 * 15 13 12 27 27 H 1.08997 * 110.49031 * 156.61294 * 16 15 13 28 28 H 1.08999 * 110.48614 * 279.26394 * 16 15 13 29 29 H 1.09002 * 117.46169 * 201.21734 * 19 17 16 30 30 H 1.09009 * 117.45993 * 346.03288 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4959 2.0465 -1.4000 5 1 1.4459 2.6526 0.7002 6 1 3.5460 1.4401 0.6999 7 6 2.0082 -1.2017 -0.0005 8 1 1.4681 -2.1370 -0.0005 9 8 3.3574 -1.2017 -0.0011 10 6 3.9671 -2.3984 -0.0010 11 8 3.3069 -3.4150 -0.0010 12 6 5.4720 -2.4773 0.0048 13 6 5.9059 -3.9445 0.0104 14 1 5.4452 -4.4808 -0.8192 15 6 5.5387 -4.6131 1.3585 16 6 6.5333 -5.7980 1.4344 17 6 7.8420 -5.2319 0.8457 18 1 8.7107 -5.1893 1.5027 19 6 8.0513 -5.3188 -0.6674 20 6 7.4429 -4.0534 -0.0632 21 1 8.0121 -3.1239 -0.0694 22 1 -0.4850 0.8401 0.0004 23 1 5.8651 -1.9857 -0.8852 24 1 5.8585 -1.9807 0.8947 25 1 5.6962 -3.9229 2.1874 26 1 4.5089 -4.9698 1.3451 27 1 6.6823 -6.1054 2.4695 28 1 6.1760 -6.6350 0.8345 29 1 9.0746 -5.2569 -1.0377 30 1 7.3872 -5.9753 -1.2298 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838130333.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:37 Heat of formation + Delta-G solvation = -66.914115 kcal Electronic energy + Delta-G solvation = -13698.898246 eV Core-core repulsion = 11266.869339 eV Total energy + Delta-G solvation = -2432.028907 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.80512 -38.73517 -35.39649 -32.41054 -32.21044 -30.30644 -26.36925 -24.43667 -22.60339 -20.42116 -19.75651 -19.21813 -17.91235 -16.53979 -15.75938 -15.29393 -14.84068 -14.36959 -13.63848 -13.29839 -12.89635 -12.75797 -12.39205 -12.05374 -11.83021 -11.17692 -11.05526 -10.94152 -10.59062 -10.50756 -10.33350 -10.26763 -10.06735 -9.65481 -9.54107 -9.03960 -8.63772 -6.32619 -4.07939 3.18174 3.26357 3.38887 3.47857 3.67033 4.12095 4.28534 4.67684 4.80591 4.85944 5.13709 5.22380 5.26471 5.50649 5.60395 5.61388 5.70742 5.75185 5.82430 6.03620 6.08240 6.09726 6.26098 6.33334 6.48723 6.60241 6.67683 7.80687 8.08605 8.68953 9.06733 9.75877 10.76256 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.063262 B = 0.007020 C = 0.006625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.499609 B = 3987.528561 C = 4225.589823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.381 4.381 8 H 0.108 0.892 9 O -0.256 6.256 10 C 0.410 3.590 11 O -0.538 6.538 12 C -0.097 4.097 13 C -0.047 4.047 14 H 0.083 0.917 15 C -0.116 4.116 16 C -0.096 4.096 17 C -0.170 4.170 18 H 0.106 0.894 19 C -0.156 4.156 20 C -0.159 4.159 21 H 0.110 0.890 22 H 0.278 0.722 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.502 -5.945 1.022 16.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.456 4.456 8 H 0.126 0.874 9 O -0.165 6.165 10 C 0.256 3.744 11 O -0.433 6.433 12 C -0.135 4.135 13 C -0.065 4.065 14 H 0.101 0.899 15 C -0.154 4.154 16 C -0.134 4.134 17 C -0.188 4.188 18 H 0.124 0.876 19 C -0.193 4.193 20 C -0.177 4.177 21 H 0.128 0.872 22 H 0.089 0.911 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.113 0.887 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 15.120 -6.061 1.039 16.323 hybrid contribution 0.242 0.850 -0.025 0.885 sum 15.362 -5.211 1.014 16.254 Atomic orbital electron populations 1.69611 1.05697 1.28270 1.48191 1.24547 0.95003 0.98632 0.95721 0.86221 0.80278 0.81595 0.78855 1.19935 1.20829 1.18459 1.20644 0.76366 0.96873 1.51751 0.87407 1.83530 1.23846 1.31694 1.77460 1.23032 0.90739 0.82503 0.78157 1.90572 1.67183 1.36218 1.49353 1.21165 0.90287 0.97724 1.04358 1.21333 0.91580 0.94404 0.99221 0.89855 1.22760 0.99996 0.96329 0.96294 1.21967 0.93053 0.98065 1.00268 1.23278 0.99529 1.03462 0.92488 0.87610 1.23022 1.01368 0.99919 0.94957 1.23291 0.95779 0.93067 1.05569 0.87185 0.91144 0.89017 0.89035 0.91695 0.89819 0.91546 0.91614 0.88727 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.43 13.96 55.48 0.77 -25.66 16 2 C 0.06 1.87 5.49 -17.53 -0.10 1.77 16 3 Si 0.90 21.75 28.62 -169.99 -4.86 16.89 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.26 -6.13 7.11 56.52 0.40 -5.72 16 7 C -0.38 -11.51 10.10 30.92 0.31 -11.20 16 8 H 0.11 3.59 7.09 -52.48 -0.37 3.21 16 9 O -0.26 -6.88 8.58 -20.71 -0.18 -7.06 16 10 C 0.41 9.64 7.70 36.00 0.28 9.92 16 11 O -0.54 -14.08 13.84 -19.05 -0.26 -14.35 16 12 C -0.10 -1.64 5.29 -27.88 -0.15 -1.79 16 13 C -0.05 -0.71 2.25 -88.96 -0.20 -0.91 16 14 H 0.08 1.39 7.96 -51.93 -0.41 0.97 16 15 C -0.12 -1.75 5.69 -24.74 -0.14 -1.90 16 16 C -0.10 -1.17 6.63 -25.07 -0.17 -1.34 16 17 C -0.17 -1.89 6.95 -89.39 -0.62 -2.52 16 18 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 19 C -0.16 -1.66 10.06 -26.81 -0.27 -1.93 16 20 C -0.16 -1.92 6.37 -89.47 -0.57 -2.49 16 21 H 0.11 1.21 8.05 -51.93 -0.42 0.79 16 22 H 0.28 7.65 8.31 -40.82 -0.34 7.31 16 23 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 24 H 0.09 1.39 8.06 -51.93 -0.42 0.97 16 25 H 0.06 0.96 8.00 -51.93 -0.42 0.54 16 26 H 0.08 1.47 7.16 -51.93 -0.37 1.10 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 LS Contribution 256.33 15.07 3.86 3.86 Total: -1.00 -32.08 256.33 -6.37 -38.45 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -4.08 Total: 0.24 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -1.62 Total: -12.38 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.77 Total: -25.66 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.44 Total: -21.41 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.86 Total: 16.89 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -32.08 -6.37 -38.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838130333.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.462 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds