Wall clock time and date at job start Sun Mar 29 2020 21:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86803 * 120.00212 * 2 1 4 4 H 1.48494 * 109.47398 * 270.00721 * 3 2 1 5 5 H 1.48507 * 109.46734 * 30.00649 * 3 2 1 6 6 H 1.48497 * 109.47010 * 150.00400 * 3 2 1 7 7 C 1.38755 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00068 * 359.97438 * 7 2 1 9 9 O 1.34922 * 120.00272 * 179.97438 * 7 2 1 10 10 C 1.34310 * 117.00349 * 179.97438 * 9 7 2 11 11 O 1.21213 * 119.99644 * 0.02562 * 10 9 7 12 12 C 1.50693 * 119.99805 * 180.27868 * 10 9 7 13 13 C 1.53004 * 109.47220 * 179.72718 * 12 10 9 14 14 H 1.09002 * 110.43555 * 54.29288 * 13 12 10 15 15 C 1.54891 * 110.48338 * 291.76179 * 13 12 10 16 16 C 1.54892 * 102.74820 * 203.37833 * 15 13 12 17 17 C 1.54268 * 104.19723 * 37.93628 * 16 15 13 18 18 H 1.09000 * 117.41469 * 117.58265 * 17 16 15 19 19 C 1.52998 * 118.20005 * 272.21899 * 17 16 15 20 20 C 1.52852 * 60.50341 * 93.59016 * 19 17 16 21 21 H 1.08995 * 119.73215 * 111.15190 * 20 19 17 22 22 H 0.97002 * 119.99938 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47536 * 299.72288 * 12 10 9 24 24 H 1.08994 * 109.47555 * 59.72727 * 12 10 9 25 25 H 1.09005 * 110.75013 * 321.68534 * 15 13 12 26 26 H 1.08993 * 110.76263 * 84.87824 * 15 13 12 27 27 H 1.08997 * 110.49031 * 156.61294 * 16 15 13 28 28 H 1.08999 * 110.48614 * 279.26394 * 16 15 13 29 29 H 1.09002 * 117.46169 * 201.21734 * 19 17 16 30 30 H 1.09009 * 117.45993 * 346.03288 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4959 2.0465 -1.4000 5 1 1.4459 2.6526 0.7002 6 1 3.5460 1.4401 0.6999 7 6 2.0082 -1.2017 -0.0005 8 1 1.4681 -2.1370 -0.0005 9 8 3.3574 -1.2017 -0.0011 10 6 3.9671 -2.3984 -0.0010 11 8 3.3069 -3.4150 -0.0010 12 6 5.4720 -2.4773 0.0048 13 6 5.9059 -3.9445 0.0104 14 1 5.4452 -4.4808 -0.8192 15 6 5.5387 -4.6131 1.3585 16 6 6.5333 -5.7980 1.4344 17 6 7.8420 -5.2319 0.8457 18 1 8.7107 -5.1893 1.5027 19 6 8.0513 -5.3188 -0.6674 20 6 7.4429 -4.0534 -0.0632 21 1 8.0121 -3.1239 -0.0694 22 1 -0.4850 0.8401 0.0004 23 1 5.8651 -1.9857 -0.8852 24 1 5.8585 -1.9807 0.8947 25 1 5.6962 -3.9229 2.1874 26 1 4.5089 -4.9698 1.3451 27 1 6.6823 -6.1054 2.4695 28 1 6.1760 -6.6350 0.8345 29 1 9.0746 -5.2569 -1.0377 30 1 7.3872 -5.9753 -1.2298 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838130333.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:36 Heat of formation + Delta-G solvation = -86.232834 kcal Electronic energy + Delta-G solvation = -13699.735969 eV Core-core repulsion = 11266.869339 eV Total energy + Delta-G solvation = -2432.866629 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.36273 -40.21290 -37.41056 -34.50414 -33.64997 -31.45552 -28.18631 -26.11927 -23.62530 -21.84799 -21.10270 -20.37460 -20.10889 -18.45109 -17.04422 -16.89029 -16.57326 -15.96866 -15.41289 -14.59250 -14.50026 -14.00433 -13.95273 -13.67508 -13.34983 -12.85878 -12.39263 -12.26921 -12.15749 -12.01639 -11.85157 -11.66731 -11.58837 -11.06624 -10.87726 -10.83166 -10.48944 -8.54673 -6.41514 1.31251 1.33619 1.54085 1.60366 2.27339 2.45814 2.77566 2.91320 3.62439 3.69727 3.83395 4.19976 4.27369 4.36211 4.42766 4.52688 4.59805 4.63381 4.78073 4.87752 4.98439 4.99554 5.10748 5.22765 5.35408 5.39214 5.51691 5.54314 5.90720 6.57064 6.83813 7.62339 8.58697 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.063262 B = 0.007020 C = 0.006625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.499609 B = 3987.528561 C = 4225.589823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.986 3.014 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.249 1.249 7 C -0.409 4.409 8 H 0.054 0.946 9 O -0.263 6.263 10 C 0.407 3.593 11 O -0.572 6.572 12 C -0.087 4.087 13 C -0.049 4.049 14 H 0.059 0.941 15 C -0.122 4.122 16 C -0.094 4.094 17 C -0.163 4.163 18 H 0.129 0.871 19 C -0.148 4.148 20 C -0.163 4.163 21 H 0.132 0.868 22 H 0.289 0.711 23 H 0.121 0.879 24 H 0.119 0.881 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.121 0.879 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.939 -4.562 1.119 19.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.172 1.172 7 C -0.485 4.485 8 H 0.072 0.928 9 O -0.173 6.173 10 C 0.254 3.746 11 O -0.468 6.468 12 C -0.124 4.124 13 C -0.067 4.067 14 H 0.077 0.923 15 C -0.160 4.160 16 C -0.131 4.131 17 C -0.181 4.181 18 H 0.147 0.853 19 C -0.185 4.185 20 C -0.181 4.181 21 H 0.150 0.850 22 H 0.099 0.901 23 H 0.139 0.861 24 H 0.137 0.863 25 H 0.087 0.913 26 H 0.063 0.937 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.139 0.861 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 18.555 -4.712 1.134 19.177 hybrid contribution -0.889 0.243 -0.057 0.924 sum 17.666 -4.469 1.077 18.254 Atomic orbital electron populations 1.69717 1.07673 1.30184 1.48512 1.25630 0.96015 1.02869 0.94181 0.85036 0.79015 0.75547 0.79835 1.18386 1.19047 1.17216 1.20311 0.78050 0.95634 1.54531 0.92822 1.83544 1.21785 1.33254 1.78682 1.24629 0.93438 0.81144 0.75382 1.90567 1.68766 1.37261 1.50177 1.21390 0.84443 0.99594 1.06967 1.21309 0.94352 0.92881 0.98198 0.92294 1.22747 0.98713 0.97841 0.96691 1.21933 0.93086 0.96652 1.01436 1.23341 0.99300 1.02316 0.93150 0.85309 1.23139 1.02396 0.98393 0.94528 1.23197 0.93025 0.94687 1.07171 0.85032 0.90143 0.86063 0.86254 0.91314 0.93746 0.90015 0.92092 0.86124 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.82 13.96 21.62 0.30 -56.52 16 2 C 0.01 0.73 5.49 84.88 0.47 1.20 16 3 Si 0.99 44.16 28.62 68.60 1.96 46.12 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.25 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.41 -25.82 10.10 67.94 0.69 -25.13 16 8 H 0.05 3.86 7.09 -2.91 -0.02 3.84 16 9 O -0.26 -14.28 8.58 14.85 0.13 -14.16 16 10 C 0.41 19.46 7.70 71.23 0.55 20.01 16 11 O -0.57 -31.60 13.84 20.77 0.29 -31.32 16 12 C -0.09 -2.76 5.29 29.85 0.16 -2.60 16 13 C -0.05 -1.43 2.25 -9.72 -0.02 -1.45 16 14 H 0.06 1.99 7.96 -2.39 -0.02 1.97 16 15 C -0.12 -3.69 5.69 31.89 0.18 -3.51 16 16 C -0.09 -2.15 6.63 31.67 0.21 -1.94 16 17 C -0.16 -3.08 6.95 -10.00 -0.07 -3.15 16 18 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 19 C -0.15 -2.64 10.06 30.54 0.31 -2.33 16 20 C -0.16 -3.39 6.37 -10.05 -0.06 -3.45 16 21 H 0.13 2.23 8.05 -2.39 -0.02 2.21 16 22 H 0.29 16.02 8.31 -92.71 -0.77 15.25 16 23 H 0.12 3.22 8.14 -2.38 -0.02 3.20 16 24 H 0.12 3.22 8.06 -2.39 -0.02 3.20 16 25 H 0.07 1.98 8.00 -2.38 -0.02 1.96 16 26 H 0.04 1.66 7.16 -2.39 -0.02 1.64 16 27 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -73.59 256.33 6.20 -67.39 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 1.12 Total: 10.83 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: 2.40 Total: -22.35 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.30 Total: -56.52 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: 0.41 Total: -45.47 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.96 Total: 46.12 kcal Total: -73.59 6.20 -67.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838130333.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.847 kcal (2) G-P(sol) polarization free energy of solvation -73.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds