Wall clock time and date at job start Sun Mar 29 2020 21:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.78623 * 2 1 4 4 C 1.53006 * 109.62755 * 239.51206 * 2 1 3 5 5 C 1.50103 * 110.13181 * 190.51955 * 4 2 1 6 6 C 1.31719 * 123.77039 * 17.17346 * 5 4 2 7 7 C 1.46863 * 118.11824 * 179.56184 * 6 5 4 8 8 O 1.21578 * 120.00254 * 0.02562 * 7 6 5 9 9 O 1.34813 * 120.00488 * 180.02562 * 7 6 5 10 10 C 1.34828 * 117.00420 * 179.97438 * 9 7 6 11 11 H 1.08004 * 119.99923 * 359.97438 * 10 9 7 12 12 C 1.38833 * 120.00036 * 179.97438 * 10 9 7 13 13 N 1.31401 * 119.99925 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00004 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47457 * 89.99629 * 14 12 10 16 16 H 1.48495 * 109.46956 * 209.99919 * 14 12 10 17 17 H 1.48500 * 109.46818 * 329.99287 * 14 12 10 18 18 C 1.50098 * 123.76515 * 359.57778 * 6 5 4 19 19 C 1.53009 * 110.13318 * 17.17708 * 18 6 5 20 20 H 1.09002 * 109.47592 * 180.48512 * 1 2 3 21 21 H 1.08996 * 109.47297 * 300.49215 * 1 2 3 22 22 H 1.09012 * 109.47117 * 60.48663 * 1 2 3 23 23 H 1.08998 * 109.36566 * 310.72088 * 4 2 1 24 24 H 1.09002 * 109.36107 * 70.31684 * 4 2 1 25 25 H 1.08001 * 118.11324 * 197.15169 * 5 4 2 26 26 H 0.96998 * 120.00130 * 179.97438 * 13 12 10 27 27 H 1.08994 * 109.36408 * 256.97109 * 18 6 5 28 28 H 1.09005 * 109.24696 * 137.30734 * 18 6 5 29 29 H 1.09004 * 109.62550 * 190.51747 * 19 18 6 30 30 H 1.08996 * 109.63108 * 69.93222 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0439 -0.7312 -1.2419 5 6 3.5226 -0.9636 -1.1296 6 6 4.1918 -0.8880 0.0024 7 6 5.6367 -1.1489 -0.0289 8 8 6.1820 -1.4250 -1.0799 9 8 6.3586 -1.0823 1.1077 10 6 7.6797 -1.3333 1.0095 11 1 8.1136 -1.5749 0.0504 12 6 8.4822 -1.2813 2.1412 13 7 9.7696 -1.5264 2.0455 14 14 7.7315 -0.8642 3.8001 15 1 7.2921 -2.1130 4.4727 16 1 8.7434 -0.1778 4.6427 17 1 6.5624 0.0301 3.6035 18 6 3.5624 -0.5507 1.3226 19 6 2.0452 -0.7330 1.2446 20 1 -0.3634 -1.0276 0.0087 21 1 -0.3634 0.5214 0.8855 22 1 -0.3634 0.5063 -0.8944 23 1 1.5335 -1.6898 -1.3340 24 1 1.8391 -0.1285 -2.1267 25 1 4.0692 -1.2073 -2.0286 26 1 10.3303 -1.4897 2.8361 27 1 3.7893 0.4846 1.5772 28 1 3.9663 -1.2089 2.0919 29 1 1.5796 -0.3125 2.1361 30 1 1.8072 -1.7940 1.1696 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838344397.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:53 Heat of formation + Delta-G solvation = -87.636888 kcal Electronic energy + Delta-G solvation = -13760.060625 eV Core-core repulsion = 11327.133112 eV Total energy + Delta-G solvation = -2432.927513 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.51610 -38.05294 -35.35561 -32.64554 -32.24177 -30.59635 -27.27368 -25.31850 -22.92795 -21.84820 -20.23656 -17.97854 -17.62346 -16.81665 -15.31754 -14.77611 -14.37531 -14.18260 -14.05060 -13.41017 -13.14602 -12.70026 -12.43727 -12.35770 -11.97205 -11.84330 -11.58889 -11.24980 -10.70141 -10.53964 -10.44681 -10.32360 -10.11812 -9.67977 -9.11247 -8.69494 -8.64596 -6.37269 -4.09017 1.86714 3.21119 3.24763 3.37835 3.94564 4.20122 4.26919 4.72388 4.81432 4.97476 5.14545 5.25578 5.45239 5.52622 5.55943 5.66871 5.73292 5.80465 5.90598 5.98979 6.07481 6.18662 6.24364 6.42998 6.48399 6.80516 7.13117 7.76331 8.05116 8.65584 9.01614 9.72318 10.71208 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.047837 B = 0.008432 C = 0.007269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.175751 B = 3320.022859 C = 3851.287403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.074 0.926 4 C -0.082 4.082 5 C -0.105 4.105 6 C -0.121 4.121 7 C 0.438 3.562 8 O -0.544 6.544 9 O -0.244 6.244 10 C -0.377 4.377 11 H 0.109 0.891 12 C 0.065 3.935 13 N -0.873 5.873 14 Si 0.904 3.096 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.258 1.258 18 C -0.081 4.081 19 C -0.113 4.113 20 H 0.054 0.946 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.122 0.878 26 H 0.280 0.720 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.330 3.025 -0.289 17.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.093 0.907 4 C -0.119 4.119 5 C -0.124 4.124 6 C -0.122 4.122 7 C 0.286 3.714 8 O -0.441 6.441 9 O -0.153 6.153 10 C -0.453 4.453 11 H 0.126 0.874 12 C -0.139 4.139 13 N -0.512 5.512 14 Si 0.729 3.271 15 H -0.198 1.198 16 H -0.207 1.207 17 H -0.182 1.182 18 C -0.118 4.118 19 C -0.151 4.151 20 H 0.073 0.927 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.097 0.903 24 H 0.094 0.906 25 H 0.140 0.860 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.962 2.939 -0.421 17.220 hybrid contribution 0.108 0.096 0.678 0.693 sum -16.855 3.035 0.256 17.128 Atomic orbital electron populations 1.21817 0.95147 1.01726 1.01532 1.21252 0.95240 0.99990 0.95121 0.90750 1.20548 0.92257 1.00813 0.98256 1.22729 0.95648 0.96274 0.97755 1.20184 0.90949 1.04661 0.96417 1.20916 0.87968 0.79746 0.82784 1.90671 1.72580 1.48880 1.31969 1.83582 1.22789 1.74617 1.34279 1.20703 0.78404 1.47420 0.98723 0.87353 1.24570 0.94500 0.95841 0.99003 1.69590 1.04007 1.46404 1.31170 0.86227 0.79506 0.79451 0.81889 1.19812 1.20738 1.18194 1.20356 0.94192 1.02595 0.94656 1.21687 0.95250 1.00679 0.97464 0.92690 0.92689 0.92785 0.90309 0.90617 0.86030 0.91000 0.90459 0.90007 0.91516 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.19 37.16 0.34 -0.90 16 2 C -0.10 -1.07 2.77 -90.43 -0.25 -1.32 16 3 H 0.07 0.85 8.12 -51.93 -0.42 0.42 16 4 C -0.08 -0.96 5.43 -28.17 -0.15 -1.11 16 5 C -0.11 -1.71 9.42 -36.48 -0.34 -2.06 16 6 C -0.12 -2.30 5.79 -103.31 -0.60 -2.90 16 7 C 0.44 11.02 7.78 34.22 0.27 11.28 16 8 O -0.54 -15.27 15.21 -19.33 -0.29 -15.57 16 9 O -0.24 -6.69 7.88 -21.79 -0.17 -6.87 16 10 C -0.38 -11.52 10.11 30.95 0.31 -11.21 16 11 H 0.11 3.65 7.09 -52.48 -0.37 3.28 16 12 C 0.06 1.89 5.50 -17.52 -0.10 1.79 16 13 N -0.87 -26.20 13.96 55.49 0.77 -25.42 16 14 Si 0.90 21.64 28.62 -169.99 -4.86 16.78 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 17 H -0.26 -6.01 7.11 56.52 0.40 -5.61 16 18 C -0.08 -1.30 5.45 -28.17 -0.15 -1.45 16 19 C -0.11 -1.37 5.29 -26.54 -0.14 -1.51 16 20 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 23 H 0.08 0.83 8.11 -51.93 -0.42 0.41 16 24 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.12 2.14 7.17 -52.49 -0.38 1.76 16 26 H 0.28 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.08 1.40 7.92 -51.93 -0.41 0.98 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 LS Contribution 257.38 15.07 3.88 3.88 Total: -1.00 -32.68 257.38 -5.59 -38.27 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -4.10 Total: -1.67 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -0.81 Total: -9.39 kcal Atomic # 7 Polarization: -26.20 SS G_CDS: 0.77 Total: -25.42 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.47 Total: -22.43 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.86 Total: 16.78 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.68 -5.59 -38.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838344397.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.370 kcal (2) G-P(sol) polarization free energy of solvation -32.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds