Wall clock time and date at job start Sun Mar 29 2020 21:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.62407 * 2 1 4 4 C 1.53009 * 109.78803 * 120.48857 * 2 1 3 5 5 C 1.50104 * 110.18357 * 169.38708 * 4 2 1 6 6 C 1.31714 * 123.77010 * 343.27664 * 5 4 2 7 7 C 1.46869 * 118.11684 * 180.18497 * 6 5 4 8 8 O 1.21573 * 119.99882 * 359.73919 * 7 6 5 9 9 O 1.34813 * 120.00160 * 179.73456 * 7 6 5 10 10 C 1.34836 * 116.99899 * 180.02562 * 9 7 6 11 11 H 1.08005 * 120.00056 * 0.02562 * 10 9 7 12 12 C 1.38825 * 120.00251 * 179.97438 * 10 9 7 13 13 N 1.31413 * 119.99751 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00480 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47495 * 270.00542 * 14 12 10 16 16 H 1.48501 * 109.46931 * 30.00214 * 14 12 10 17 17 H 1.48503 * 109.47412 * 149.99908 * 14 12 10 18 18 C 1.50106 * 123.76949 * 359.90496 * 6 5 4 19 19 C 1.53010 * 110.13238 * 343.08747 * 18 6 5 20 20 H 1.09002 * 109.47296 * 180.39107 * 1 2 3 21 21 H 1.09005 * 109.47234 * 300.38776 * 1 2 3 22 22 H 1.09000 * 109.46988 * 60.39084 * 1 2 3 23 23 H 1.09000 * 109.36097 * 289.77528 * 4 2 1 24 24 H 1.09002 * 109.36112 * 49.37731 * 4 2 1 25 25 H 1.07993 * 118.11118 * 163.04956 * 5 4 2 26 26 H 0.97001 * 119.99781 * 179.97438 * 13 12 10 27 27 H 1.09005 * 109.35842 * 103.28865 * 18 6 5 28 28 H 1.09001 * 109.35856 * 222.88209 * 18 6 5 29 29 H 1.09001 * 109.62454 * 169.47986 * 19 18 6 30 30 H 1.08991 * 109.62791 * 290.06363 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0480 -0.7305 1.2407 5 6 3.5263 -0.9635 1.1250 6 6 4.1942 -0.8804 -0.0072 7 6 5.6400 -1.1373 0.0216 8 8 6.1876 -1.4127 1.0715 9 8 6.3598 -1.0679 -1.1162 10 6 7.6818 -1.3153 -1.0203 11 1 8.1179 -1.5563 -0.0620 12 6 8.4821 -1.2613 -2.1533 13 7 7.9513 -0.9686 -3.3193 14 14 10.3134 -1.6047 -2.0206 15 1 11.0369 -0.3359 -1.7523 16 1 10.5588 -2.5589 -0.9095 17 1 10.8005 -2.1925 -3.2944 18 6 3.5617 -0.5442 -1.3263 19 6 2.0452 -0.7308 -1.2460 20 1 -0.3634 -1.0276 0.0070 21 1 -0.3634 0.5199 0.8865 22 1 -0.3633 0.5078 -0.8935 23 1 1.8430 -0.1288 2.1262 24 1 1.5403 -1.6906 1.3330 25 1 4.0744 -1.2099 2.0223 26 1 8.5106 -0.9305 -4.1109 27 1 3.7854 0.4919 -1.5806 28 1 3.9660 -1.1990 -2.0983 29 1 1.5770 -0.3111 -2.1364 30 1 1.8104 -1.7924 -1.1711 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838344399.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:54 Heat of formation + Delta-G solvation = -90.518575 kcal Electronic energy + Delta-G solvation = -13695.565036 eV Core-core repulsion = 11262.512564 eV Total energy + Delta-G solvation = -2433.052473 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.32319 -37.87970 -35.15314 -32.50506 -32.07108 -30.44080 -27.11227 -25.22454 -22.78310 -21.91843 -20.22198 -17.71886 -17.51970 -16.67465 -15.05890 -14.56756 -14.38811 -14.24413 -13.91547 -13.24873 -13.20859 -12.68017 -12.36676 -11.96709 -11.85828 -11.54884 -11.46235 -11.18063 -10.55319 -10.43718 -10.40897 -10.28865 -10.04750 -9.73963 -8.95337 -8.57694 -8.50752 -6.41197 -4.04775 2.01170 3.17335 3.19879 3.26394 3.98283 4.09932 4.59660 4.83986 4.92720 5.13472 5.17987 5.40351 5.58310 5.63523 5.67995 5.77663 5.85374 5.93866 6.05018 6.10962 6.21144 6.32425 6.47100 6.59824 6.71016 6.97169 7.32279 7.44701 7.97163 8.75539 9.07871 9.89929 10.76824 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.065359 B = 0.007150 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.297936 B = 3914.876597 C = 4289.313523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.073 0.927 4 C -0.080 4.080 5 C -0.114 4.114 6 C -0.114 4.114 7 C 0.424 3.576 8 O -0.561 6.561 9 O -0.206 6.206 10 C -0.378 4.378 11 H 0.095 0.905 12 C 0.041 3.959 13 N -0.862 5.862 14 Si 0.944 3.056 15 H -0.273 1.273 16 H -0.266 1.266 17 H -0.278 1.278 18 C -0.079 4.079 19 C -0.113 4.113 20 H 0.053 0.947 21 H 0.052 0.948 22 H 0.054 0.946 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.119 0.881 26 H 0.270 0.730 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.833 1.483 3.217 12.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.092 0.908 4 C -0.117 4.117 5 C -0.133 4.133 6 C -0.115 4.115 7 C 0.273 3.727 8 O -0.460 6.460 9 O -0.113 6.113 10 C -0.454 4.454 11 H 0.113 0.887 12 C -0.163 4.163 13 N -0.499 5.499 14 Si 0.768 3.232 15 H -0.199 1.199 16 H -0.191 1.191 17 H -0.203 1.203 18 C -0.116 4.116 19 C -0.150 4.150 20 H 0.072 0.928 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.137 0.863 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.084 0.916 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.602 1.434 3.221 12.126 hybrid contribution 1.030 -0.163 0.060 1.044 sum -10.573 1.271 3.281 11.143 Atomic orbital electron populations 1.21818 0.95269 1.01653 1.01454 1.21248 0.95108 0.99998 0.95241 0.90836 1.20515 0.92401 1.00625 0.98143 1.22669 0.95556 0.97346 0.97749 1.20240 0.91180 1.03730 0.96355 1.21175 0.88373 0.79854 0.83311 1.90621 1.72670 1.50243 1.32493 1.83946 1.21966 1.72948 1.32414 1.21278 0.79671 1.47929 0.96531 0.88716 1.25356 1.00468 0.96379 0.94115 1.69981 1.36453 1.44639 0.98791 0.85668 0.80452 0.78977 0.78087 1.19860 1.19080 1.20298 1.20330 0.93762 1.02802 0.94712 1.21684 0.95558 1.00495 0.97278 0.92750 0.92886 0.92685 0.90816 0.90546 0.86271 0.92044 0.90507 0.89576 0.91578 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.20 37.16 0.34 -1.03 16 2 C -0.10 -1.18 2.76 -90.43 -0.25 -1.43 16 3 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 4 C -0.08 -1.02 5.43 -28.17 -0.15 -1.18 16 5 C -0.11 -2.00 9.42 -36.48 -0.34 -2.34 16 6 C -0.11 -2.34 5.79 -103.30 -0.60 -2.94 16 7 C 0.42 11.23 7.78 34.22 0.27 11.50 16 8 O -0.56 -16.02 15.20 -19.32 -0.29 -16.32 16 9 O -0.21 -6.11 9.05 -21.81 -0.20 -6.30 16 10 C -0.38 -11.49 9.65 30.95 0.30 -11.19 16 11 H 0.10 2.91 6.86 -52.48 -0.36 2.55 16 12 C 0.04 1.17 5.50 -17.51 -0.10 1.08 16 13 N -0.86 -25.46 13.67 55.49 0.76 -24.70 16 14 Si 0.94 21.59 29.55 -169.99 -5.02 16.57 16 15 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 18 C -0.08 -1.41 5.45 -28.17 -0.15 -1.57 16 19 C -0.11 -1.53 5.29 -26.54 -0.14 -1.67 16 20 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.08 0.89 8.11 -51.93 -0.42 0.47 16 25 H 0.12 2.22 7.17 -52.49 -0.38 1.84 16 26 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.09 1.70 7.93 -51.93 -0.41 1.29 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 LS Contribution 258.52 15.07 3.90 3.90 Total: -1.00 -32.93 258.52 -5.77 -38.70 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -4.08 Total: -1.08 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -0.83 Total: -10.77 kcal Atomic # 7 Polarization: -25.46 SS G_CDS: 0.76 Total: -24.70 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.49 Total: -22.62 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -32.93 -5.77 -38.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838344399.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.814 kcal (2) G-P(sol) polarization free energy of solvation -32.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds