Wall clock time and date at job start Sun Mar 29 2020 21:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.50696 * 119.99905 * 2 1 4 4 C 1.52999 * 109.47144 * 294.99997 * 3 2 1 5 5 C 1.53006 * 109.47073 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47041 * 179.97438 * 5 4 3 7 7 H 1.08000 * 120.00224 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00103 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00557 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 119.99743 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47138 * 90.00105 * 10 8 6 12 12 H 1.48499 * 109.46897 * 209.99747 * 10 8 6 13 13 H 1.48497 * 109.47532 * 330.00100 * 10 8 6 14 14 N 1.28006 * 119.99700 * 180.02562 * 2 1 3 15 15 N 1.40105 * 120.00257 * 359.97438 * 14 2 1 16 16 C 1.46499 * 120.00063 * 180.02562 * 15 14 2 17 17 C 1.52998 * 117.49964 * 218.62100 * 16 15 14 18 18 C 1.52992 * 60.00058 * 252.50730 * 17 16 15 19 19 H 1.08990 * 109.46835 * 269.99983 * 1 2 3 20 20 H 1.08999 * 109.46830 * 30.00255 * 1 2 3 21 21 H 1.08996 * 109.47100 * 149.99812 * 1 2 3 22 22 H 1.08995 * 109.47033 * 54.99957 * 3 2 1 23 23 H 1.08999 * 109.46784 * 175.00416 * 3 2 1 24 24 H 1.09003 * 109.47454 * 299.99928 * 4 3 2 25 25 H 1.09000 * 109.47400 * 60.00250 * 4 3 2 26 26 H 1.08995 * 109.47144 * 299.99984 * 5 4 3 27 27 H 1.08999 * 109.46745 * 60.00487 * 5 4 3 28 28 H 0.96998 * 120.00548 * 180.02562 * 9 8 6 29 29 H 0.96999 * 119.99953 * 0.02562 * 15 14 2 30 30 H 1.09005 * 115.55014 * 4.33205 * 16 15 14 31 31 H 1.09002 * 117.49866 * 0.02562 * 17 16 15 32 32 H 1.09009 * 117.49757 * 145.01895 * 17 16 15 33 33 H 1.09003 * 117.50414 * 252.50976 * 18 17 16 34 34 H 1.09007 * 117.51390 * 107.47922 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9876 2.0516 -1.3073 5 6 2.7521 3.3769 -1.3070 6 6 2.4837 4.1119 -2.5950 7 1 1.8327 3.6774 -3.3391 8 6 3.0693 5.3390 -2.8234 9 7 2.8348 5.9807 -3.9471 10 14 4.1960 6.0902 -1.5366 11 1 5.5934 5.6547 -1.7873 12 1 4.1176 7.5711 -1.6139 13 1 3.7727 5.6420 -0.1856 14 7 2.1470 -1.1086 -0.0005 15 7 1.4465 -2.3219 -0.0005 16 6 2.1790 -3.5907 -0.0005 17 6 1.6139 -4.7326 -0.8476 18 6 1.5144 -4.7901 0.6780 19 1 -0.3632 0.0000 1.0276 20 1 -0.3633 0.8900 -0.5139 21 1 -0.3633 -0.8899 -0.5138 22 1 1.9317 1.9144 0.8418 23 1 3.3288 1.1078 0.0895 24 1 2.3164 1.4422 -2.1492 25 1 0.9193 2.2488 -1.3969 26 1 2.4229 3.9861 -0.4653 27 1 3.8204 3.1801 -1.2173 28 1 3.2471 6.8439 -4.1080 29 1 0.4765 -2.3219 -0.0005 30 1 3.2633 -3.5075 0.0738 31 1 0.6974 -4.5398 -1.4052 32 1 2.3266 -5.4010 -1.3310 33 1 2.1615 -5.4963 1.1984 34 1 0.5323 -4.6352 1.1248 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841632782.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:46 Heat of formation + Delta-G solvation = 49.233178 kcal Electronic energy + Delta-G solvation = -13154.551108 eV Core-core repulsion = 10895.684572 eV Total energy + Delta-G solvation = -2258.866536 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.29958 -36.86247 -34.29717 -32.30220 -30.49716 -27.94858 -27.36835 -23.41148 -22.55492 -21.52303 -20.17835 -19.14920 -16.70654 -16.24263 -16.19815 -14.80301 -14.28693 -14.15975 -13.84324 -13.57522 -12.70090 -12.49021 -12.30062 -11.99819 -11.85882 -11.76717 -11.52921 -11.02750 -10.76873 -10.65385 -10.37310 -9.98753 -9.71192 -9.64841 -9.50572 -9.13097 -8.48991 -7.64127 -5.99665 -3.97338 2.46560 2.90948 3.35207 3.42189 3.46143 3.79462 4.49867 4.65988 4.81437 4.82380 4.95089 5.14021 5.33110 5.34963 5.41346 5.53381 5.63510 5.77795 5.87051 5.90920 5.98353 6.07713 6.31115 6.58981 6.72272 6.81829 6.97593 7.23868 7.37711 7.50268 7.84933 8.59242 8.64025 9.05714 9.63145 11.13956 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.060636 B = 0.004719 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.660342 B = 5932.379153 C = 5961.038227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.074 3.926 3 C -0.060 4.060 4 C -0.095 4.095 5 C -0.015 4.015 6 C -0.519 4.519 7 H 0.071 0.929 8 C 0.064 3.936 9 N -0.906 5.906 10 Si 0.881 3.119 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.264 1.264 14 N -0.245 5.245 15 N -0.645 5.645 16 C 0.139 3.861 17 C -0.207 4.207 18 C -0.204 4.204 19 H 0.072 0.928 20 H 0.085 0.915 21 H 0.056 0.944 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.017 0.983 27 H 0.013 0.987 28 H 0.262 0.738 29 H 0.375 0.625 30 H 0.128 0.872 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.586 -17.133 9.996 20.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.121 4.121 3 C -0.100 4.100 4 C -0.134 4.134 5 C -0.052 4.052 6 C -0.557 4.557 7 H 0.089 0.911 8 C -0.136 4.136 9 N -0.545 5.545 10 Si 0.708 3.292 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.189 1.189 14 N -0.050 5.050 15 N -0.380 5.380 16 C 0.031 3.969 17 C -0.247 4.247 18 C -0.244 4.244 19 H 0.090 0.910 20 H 0.104 0.896 21 H 0.075 0.925 22 H 0.095 0.905 23 H 0.093 0.907 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.035 0.965 27 H 0.031 0.969 28 H 0.072 0.928 29 H 0.214 0.786 30 H 0.145 0.855 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.521 -17.504 9.908 20.271 hybrid contribution -0.752 0.536 0.461 1.032 sum -3.273 -16.967 10.369 20.152 Atomic orbital electron populations 1.21221 0.93846 1.03420 1.02496 1.24811 0.93945 0.93794 0.99566 1.20540 0.99535 0.89539 1.00367 1.21438 1.00689 0.97106 0.94161 1.19590 0.95283 0.92673 0.97663 1.21169 1.29331 1.03196 1.02010 0.91122 1.25045 0.96336 0.96949 0.95297 1.69920 1.44762 1.15242 1.24609 0.86764 0.81440 0.78113 0.82885 1.20315 1.21510 1.18904 1.73817 1.26533 0.91903 1.12794 1.47343 1.05206 0.99883 1.85602 1.20989 0.96202 0.78153 1.01605 1.23506 1.04006 1.03628 0.93559 1.23461 1.03089 1.02477 0.95352 0.90969 0.89605 0.92504 0.90488 0.90681 0.92691 0.92567 0.96499 0.96918 0.92814 0.78595 0.85456 0.88983 0.88245 0.88216 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.46 36.01 0.34 -1.50 16 2 C 0.07 1.10 6.55 -78.91 -0.52 0.59 16 3 C -0.06 -0.98 5.60 -27.89 -0.16 -1.13 16 4 C -0.10 -1.87 5.03 -26.73 -0.13 -2.00 16 5 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 6 C -0.52 -14.94 9.66 -34.44 -0.33 -15.28 16 7 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 8 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 9 N -0.91 -28.27 13.96 55.43 0.77 -27.49 16 10 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 14 N -0.24 -3.85 11.38 35.60 0.41 -3.44 16 15 N -0.65 -8.48 6.47 -4.89 -0.03 -8.51 16 16 C 0.14 1.53 7.02 -67.93 -0.48 1.05 16 17 C -0.21 -1.88 10.46 -26.74 -0.28 -2.16 16 18 C -0.20 -1.75 10.46 -26.74 -0.28 -2.03 16 19 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 20 H 0.09 1.06 6.91 -51.93 -0.36 0.71 16 21 H 0.06 0.64 6.31 -51.93 -0.33 0.31 16 22 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 23 H 0.07 1.24 8.11 -51.93 -0.42 0.82 16 24 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.06 1.07 7.01 -51.93 -0.36 0.70 16 26 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 27 H 0.01 0.30 7.57 -51.93 -0.39 -0.10 16 28 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.37 4.39 6.52 -182.59 -1.19 3.20 16 30 H 0.13 1.42 8.14 -51.93 -0.42 0.99 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 284.85 15.07 4.29 4.29 Total: -1.00 -31.44 284.85 -7.67 -39.11 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -6.40 Total: -0.06 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -2.05 Total: -21.11 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 1.15 Total: -39.44 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.44 -7.67 -39.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841632782.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.346 kcal (2) G-P(sol) polarization free energy of solvation -31.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds