Wall clock time and date at job start Sun Mar 29 2020 21:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.50696 * 119.99905 * 2 1 4 4 C 1.52999 * 109.47144 * 294.99997 * 3 2 1 5 5 C 1.53006 * 109.47073 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47041 * 179.97438 * 5 4 3 7 7 H 1.08000 * 120.00224 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00103 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00557 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 119.99743 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47138 * 90.00105 * 10 8 6 12 12 H 1.48499 * 109.46897 * 209.99747 * 10 8 6 13 13 H 1.48497 * 109.47532 * 330.00100 * 10 8 6 14 14 N 1.28006 * 119.99700 * 180.02562 * 2 1 3 15 15 N 1.40105 * 120.00257 * 359.97438 * 14 2 1 16 16 C 1.46499 * 120.00063 * 180.02562 * 15 14 2 17 17 C 1.52998 * 117.49964 * 218.62100 * 16 15 14 18 18 C 1.52992 * 60.00058 * 252.50730 * 17 16 15 19 19 H 1.08990 * 109.46835 * 269.99983 * 1 2 3 20 20 H 1.08999 * 109.46830 * 30.00255 * 1 2 3 21 21 H 1.08996 * 109.47100 * 149.99812 * 1 2 3 22 22 H 1.08995 * 109.47033 * 54.99957 * 3 2 1 23 23 H 1.08999 * 109.46784 * 175.00416 * 3 2 1 24 24 H 1.09003 * 109.47454 * 299.99928 * 4 3 2 25 25 H 1.09000 * 109.47400 * 60.00250 * 4 3 2 26 26 H 1.08995 * 109.47144 * 299.99984 * 5 4 3 27 27 H 1.08999 * 109.46745 * 60.00487 * 5 4 3 28 28 H 0.96998 * 120.00548 * 180.02562 * 9 8 6 29 29 H 0.96999 * 119.99953 * 0.02562 * 15 14 2 30 30 H 1.09005 * 115.55014 * 4.33205 * 16 15 14 31 31 H 1.09002 * 117.49866 * 0.02562 * 17 16 15 32 32 H 1.09009 * 117.49757 * 145.01895 * 17 16 15 33 33 H 1.09003 * 117.50414 * 252.50976 * 18 17 16 34 34 H 1.09007 * 117.51390 * 107.47922 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9876 2.0516 -1.3073 5 6 2.7521 3.3769 -1.3070 6 6 2.4837 4.1119 -2.5950 7 1 1.8327 3.6774 -3.3391 8 6 3.0693 5.3390 -2.8234 9 7 2.8348 5.9807 -3.9471 10 14 4.1960 6.0902 -1.5366 11 1 5.5934 5.6547 -1.7873 12 1 4.1176 7.5711 -1.6139 13 1 3.7727 5.6420 -0.1856 14 7 2.1470 -1.1086 -0.0005 15 7 1.4465 -2.3219 -0.0005 16 6 2.1790 -3.5907 -0.0005 17 6 1.6139 -4.7326 -0.8476 18 6 1.5144 -4.7901 0.6780 19 1 -0.3632 0.0000 1.0276 20 1 -0.3633 0.8900 -0.5139 21 1 -0.3633 -0.8899 -0.5138 22 1 1.9317 1.9144 0.8418 23 1 3.3288 1.1078 0.0895 24 1 2.3164 1.4422 -2.1492 25 1 0.9193 2.2488 -1.3969 26 1 2.4229 3.9861 -0.4653 27 1 3.8204 3.1801 -1.2173 28 1 3.2471 6.8439 -4.1080 29 1 0.4765 -2.3219 -0.0005 30 1 3.2633 -3.5075 0.0738 31 1 0.6974 -4.5398 -1.4052 32 1 2.3266 -5.4010 -1.3310 33 1 2.1615 -5.4963 1.1984 34 1 0.5323 -4.6352 1.1248 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841632782.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:46 Heat of formation + Delta-G solvation = 29.682338 kcal Electronic energy + Delta-G solvation = -13155.398896 eV Core-core repulsion = 10895.684572 eV Total energy + Delta-G solvation = -2259.714324 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.29574 -37.84557 -35.96461 -34.19637 -31.89811 -29.07844 -28.87967 -25.15067 -23.23362 -22.46247 -21.92124 -20.31420 -18.81671 -17.37259 -17.11425 -16.27847 -15.84677 -15.35133 -15.16871 -14.73212 -14.57020 -13.73765 -13.48922 -13.34787 -13.19423 -12.88420 -12.58719 -12.48068 -12.41837 -11.74751 -11.67471 -11.47871 -11.35623 -11.30188 -11.12642 -10.77739 -10.71864 -8.62711 -8.25569 -6.29604 1.34375 1.40681 1.42085 1.54718 1.95716 2.40746 3.05064 3.10261 3.82821 3.89413 4.07452 4.09422 4.12070 4.31734 4.41558 4.58578 4.69710 4.70848 4.76031 4.95790 4.99668 5.04541 5.14060 5.17817 5.21518 5.28185 5.60224 5.61360 5.71845 5.76995 6.31810 6.34074 6.78917 7.35075 7.59636 8.91483 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.060636 B = 0.004719 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.660342 B = 5932.379153 C = 5961.038227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.062 3.938 3 C -0.050 4.050 4 C -0.085 4.085 5 C -0.013 4.013 6 C -0.533 4.533 7 H 0.028 0.972 8 C 0.000 4.000 9 N -0.956 5.956 10 Si 0.953 3.047 11 H -0.269 1.269 12 H -0.285 1.285 13 H -0.240 1.240 14 N -0.268 5.268 15 N -0.644 5.644 16 C 0.106 3.894 17 C -0.200 4.200 18 C -0.184 4.184 19 H 0.091 0.909 20 H 0.081 0.919 21 H 0.064 0.936 22 H 0.096 0.904 23 H 0.070 0.930 24 H 0.036 0.964 25 H 0.058 0.942 26 H 0.029 0.971 27 H 0.017 0.983 28 H 0.265 0.735 29 H 0.381 0.619 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.391 -18.223 12.240 22.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 C -0.090 4.090 4 C -0.124 4.124 5 C -0.051 4.051 6 C -0.571 4.571 7 H 0.047 0.953 8 C -0.196 4.196 9 N -0.597 5.597 10 Si 0.776 3.224 11 H -0.194 1.194 12 H -0.211 1.211 13 H -0.163 1.163 14 N -0.075 5.075 15 N -0.381 5.381 16 C -0.001 4.001 17 C -0.240 4.240 18 C -0.223 4.223 19 H 0.109 0.891 20 H 0.100 0.900 21 H 0.082 0.918 22 H 0.114 0.886 23 H 0.089 0.911 24 H 0.054 0.946 25 H 0.077 0.923 26 H 0.047 0.953 27 H 0.036 0.964 28 H 0.074 0.926 29 H 0.221 0.779 30 H 0.139 0.861 31 H 0.109 0.891 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.337 -18.628 12.162 22.369 hybrid contribution -0.855 0.779 -0.332 1.203 sum -3.192 -17.850 11.829 21.650 Atomic orbital electron populations 1.21215 0.91974 1.03579 1.03745 1.24738 0.95157 0.93096 1.00212 1.20348 0.99632 0.90296 0.98721 1.21249 1.00145 0.95317 0.95707 1.19560 0.96130 0.94202 0.95159 1.21558 1.28438 1.03780 1.03311 0.95340 1.26082 0.98244 0.97536 0.97766 1.70082 1.46486 1.15965 1.27137 0.85609 0.79024 0.77075 0.80651 1.19436 1.21115 1.16266 1.73702 1.28012 0.92966 1.12774 1.47405 1.05643 0.99576 1.85490 1.21211 0.96170 0.78131 1.04579 1.23550 1.03929 1.02306 0.94168 1.23510 1.03172 1.00546 0.95086 0.89088 0.89998 0.91762 0.88584 0.91128 0.94559 0.92317 0.95258 0.96422 0.92587 0.77881 0.86139 0.89114 0.87043 0.86564 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 9.46 71.24 0.67 -2.63 16 2 C 0.06 1.79 6.55 46.53 0.30 2.09 16 3 C -0.05 -1.56 5.60 29.85 0.17 -1.39 16 4 C -0.09 -3.32 5.03 30.60 0.15 -3.16 16 5 C -0.01 -0.61 4.04 29.85 0.12 -0.49 16 6 C -0.53 -31.28 9.66 25.60 0.25 -31.03 16 7 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 8 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 9 N -0.96 -61.04 13.96 21.45 0.30 -60.74 16 10 Si 0.95 44.53 27.47 68.60 1.88 46.41 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 12 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.24 -10.15 6.54 99.48 0.65 -9.50 16 14 N -0.27 -8.14 11.38 -41.20 -0.47 -8.61 16 15 N -0.64 -16.08 6.47 -169.39 -1.10 -17.18 16 16 C 0.11 2.20 7.02 44.99 0.32 2.51 16 17 C -0.20 -3.22 10.46 30.59 0.32 -2.90 16 18 C -0.18 -2.69 10.46 30.59 0.32 -2.37 16 19 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 20 H 0.08 1.92 6.91 -2.39 -0.02 1.90 16 21 H 0.06 1.34 6.31 -2.39 -0.02 1.33 16 22 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 23 H 0.07 2.23 8.11 -2.39 -0.02 2.22 16 24 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.06 2.22 7.01 -2.39 -0.02 2.20 16 26 H 0.03 1.30 7.20 -2.39 -0.02 1.28 16 27 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 28 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 29 H 0.38 8.29 6.52 -213.32 -1.39 6.90 16 30 H 0.12 2.60 8.14 -2.38 -0.02 2.58 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -68.32 284.85 3.33 -64.99 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -0.38 Total: 14.05 kcal Atomic # 6 Polarization: -42.01 SS G_CDS: 3.09 Total: -38.93 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -1.27 Total: -86.53 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.41 kcal Total: -68.32 3.33 -64.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841632782.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.676 kcal (2) G-P(sol) polarization free energy of solvation -68.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds