Wall clock time and date at job start Sun Mar 29 2020 22:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46613 * 2 1 4 4 C 1.50696 * 109.47154 * 119.99583 * 2 1 3 5 5 H 1.08001 * 120.00153 * 114.36513 * 4 2 1 6 6 C 1.37883 * 120.00327 * 294.36952 * 4 2 1 7 7 N 1.31513 * 120.00408 * 156.86053 * 6 4 2 8 8 Si 1.86797 * 119.99627 * 336.85892 * 6 4 2 9 9 H 1.48502 * 109.47157 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.47182 * 300.00051 * 8 6 4 11 11 H 1.48501 * 109.47156 * 60.00260 * 8 6 4 12 12 N 1.46494 * 109.47469 * 239.99818 * 2 1 3 13 13 C 1.38573 * 119.99950 * 84.99687 * 12 2 1 14 14 C 1.39465 * 120.51674 * 359.72421 * 13 12 2 15 15 C 1.38470 * 118.31164 * 179.80119 * 14 13 12 16 16 F 1.35103 * 120.42656 * 180.22202 * 15 14 13 17 17 N 1.32784 * 119.13880 * 0.47455 * 15 14 13 18 18 C 1.31763 * 120.96483 * 359.74228 * 17 15 14 19 19 N 1.31761 * 121.85732 * 0.02594 * 18 17 15 20 20 H 1.09000 * 109.47182 * 293.10481 * 1 2 3 21 21 H 1.09001 * 109.47137 * 53.11102 * 1 2 3 22 22 H 1.08998 * 109.47063 * 173.10517 * 1 2 3 23 23 H 0.97002 * 119.99657 * 354.93259 * 7 6 4 24 24 H 0.97003 * 120.00269 * 265.00359 * 12 2 1 25 25 H 1.08000 * 120.83856 * 359.97438 * 14 13 12 26 26 H 1.07998 * 119.06986 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5761 -1.6384 1.1341 6 6 1.7976 -0.1754 2.4795 7 7 1.8074 -0.9527 3.5402 8 14 1.4659 1.6535 2.6648 9 1 1.2470 1.9741 4.0982 10 1 2.6315 2.4218 2.1587 11 1 0.2560 2.0187 1.8851 12 7 2.0184 -0.6906 -1.1961 13 6 2.1507 0.0007 -2.3898 14 6 1.8166 1.3525 -2.4661 15 6 1.9705 1.9995 -3.6806 16 9 1.6641 3.3098 -3.8015 17 7 2.4184 1.3142 -4.7260 18 6 2.7205 0.0361 -4.6199 19 7 2.5932 -0.6164 -3.4823 20 1 -0.3633 0.4033 0.9452 21 1 -0.3633 0.6169 -0.8219 22 1 -0.3633 -1.0202 -0.1234 23 1 1.9063 -1.9122 3.4375 24 1 2.2491 -1.6318 -1.1525 25 1 1.4499 1.8820 -1.5991 26 1 3.0819 -0.4917 -5.4900 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853250940.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:22 Heat of formation + Delta-G solvation = 3.492659 kcal Electronic energy + Delta-G solvation = -13536.939355 eV Core-core repulsion = 10951.370050 eV Total energy + Delta-G solvation = -2585.569305 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.082 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.91939 -40.49701 -36.69976 -33.50837 -32.34125 -30.90894 -29.09780 -25.09249 -24.30249 -23.09485 -20.58211 -18.72237 -17.85602 -17.38300 -16.02232 -15.57530 -15.17067 -14.91321 -14.33797 -13.99242 -13.61983 -13.30732 -12.79797 -12.59713 -12.12042 -11.66550 -10.82436 -10.70973 -10.57550 -10.21428 -10.02610 -9.53663 -9.29447 -9.18755 -8.48803 -7.72568 -6.77145 -4.39949 1.14889 1.56202 3.21961 3.29422 3.41169 3.50461 3.68861 4.03748 4.27199 4.47299 4.92667 5.05055 5.35491 5.58542 5.76111 6.03545 6.26384 6.32741 6.49818 6.70220 6.94685 7.04618 7.36930 7.67143 8.09086 8.13637 8.41012 8.62452 9.27139 10.61514 Molecular weight = 211.08amu Principal moments of inertia in cm(-1) A = 0.042501 B = 0.009227 C = 0.008043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.653313 B = 3033.758727 C = 3480.551759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.245 3.755 3 H 0.037 0.963 4 C -0.629 4.629 5 H 0.066 0.934 6 C 0.048 3.952 7 N -0.883 5.883 8 Si 1.030 2.970 9 H -0.279 1.279 10 H -0.279 1.279 11 H -0.273 1.273 12 N -0.666 5.666 13 C 0.462 3.538 14 C -0.322 4.322 15 C 0.375 3.625 16 F -0.109 7.109 17 N -0.611 5.611 18 C 0.369 3.631 19 N -0.596 5.596 20 H 0.065 0.935 21 H 0.028 0.972 22 H 0.050 0.950 23 H 0.273 0.727 24 H 0.407 0.593 25 H 0.153 0.847 26 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.873 3.525 -10.459 11.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.141 3.859 3 H 0.054 0.946 4 C -0.666 4.666 5 H 0.084 0.916 6 C -0.161 4.161 7 N -0.514 5.514 8 Si 0.857 3.143 9 H -0.204 1.204 10 H -0.205 1.205 11 H -0.199 1.199 12 N -0.290 5.290 13 C 0.215 3.785 14 C -0.352 4.352 15 C 0.218 3.782 16 F -0.088 7.088 17 N -0.338 5.338 18 C 0.079 3.921 19 N -0.323 5.323 20 H 0.084 0.916 21 H 0.047 0.953 22 H 0.069 0.931 23 H 0.084 0.916 24 H 0.243 0.757 25 H 0.170 0.830 26 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -0.929 4.386 -9.778 10.757 hybrid contribution 0.026 -0.897 -0.424 0.992 sum -0.903 3.489 -10.202 10.820 Atomic orbital electron populations 1.22560 0.98392 1.00837 1.00424 1.19244 0.90788 0.93705 0.82138 0.94580 1.21924 1.42568 1.11642 0.90463 0.91591 1.25656 0.92920 1.05966 0.91562 1.70851 1.42019 1.06725 1.31781 0.84231 0.77560 0.75529 0.77019 1.20409 1.20482 1.19897 1.45370 1.64658 1.13235 1.05778 1.18557 0.85286 0.87651 0.86964 1.21857 1.17183 0.96391 0.99810 1.17960 0.91323 0.79126 0.89773 1.91611 1.89481 1.31286 1.96469 1.67763 1.22594 1.11048 1.32428 1.24348 0.88515 0.85141 0.94106 1.68044 1.24230 1.40326 0.99670 0.91616 0.95258 0.93053 0.91640 0.75684 0.82951 0.78353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 9.16 37.16 0.34 -2.95 15 2 C 0.24 5.28 1.85 -69.09 -0.13 5.16 15 3 H 0.04 0.79 5.10 -51.93 -0.26 0.52 15 4 C -0.63 -16.00 8.95 -34.44 -0.31 -16.31 15 5 H 0.07 1.80 7.96 -52.49 -0.42 1.38 15 6 C 0.05 1.26 5.19 -17.82 -0.09 1.17 15 7 N -0.88 -25.00 13.70 55.43 0.76 -24.24 15 8 Si 1.03 22.85 26.44 -169.99 -4.50 18.36 15 9 H -0.28 -6.28 7.11 56.52 0.40 -5.87 15 10 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 11 H -0.27 -5.53 6.15 56.52 0.35 -5.18 15 12 N -0.67 -13.02 5.22 -54.94 -0.29 -13.31 15 13 C 0.46 8.51 7.69 -154.76 -1.19 7.32 15 14 C -0.32 -5.67 8.95 -39.04 -0.35 -6.02 15 15 C 0.37 6.34 8.50 -17.05 -0.14 6.20 15 16 F -0.11 -1.76 17.30 2.25 0.04 -1.72 15 17 N -0.61 -9.96 10.45 -14.98 -0.16 -10.12 15 18 C 0.37 5.42 12.28 -92.21 -1.13 4.29 15 19 N -0.60 -10.12 10.47 -13.84 -0.14 -10.26 15 20 H 0.07 1.36 5.48 -51.93 -0.28 1.08 15 21 H 0.03 0.52 7.65 -51.93 -0.40 0.12 15 22 H 0.05 1.02 8.14 -51.93 -0.42 0.60 15 23 H 0.27 7.70 8.73 -40.82 -0.36 7.34 15 24 H 0.41 7.77 8.65 -40.82 -0.35 7.41 15 25 H 0.15 2.63 6.16 -52.49 -0.32 2.31 15 26 H 0.20 2.02 8.06 -52.49 -0.42 1.60 15 LS Contribution 232.44 15.07 3.50 3.50 Total: -1.00 -27.32 232.44 -5.88 -33.20 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -2.09 Total: 5.74 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -3.00 Total: -1.14 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: 0.17 Total: -57.93 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.50 Total: 18.36 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -27.32 -5.88 -33.20 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853250940.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.692 kcal (2) G-P(sol) polarization free energy of solvation -27.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds