Wall clock time and date at job start Sun Mar 29 2020 22:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46613 * 2 1 4 4 C 1.50696 * 109.47154 * 119.99583 * 2 1 3 5 5 H 1.08001 * 120.00153 * 114.36513 * 4 2 1 6 6 C 1.37883 * 120.00327 * 294.36952 * 4 2 1 7 7 N 1.31513 * 120.00408 * 156.86053 * 6 4 2 8 8 Si 1.86797 * 119.99627 * 336.85892 * 6 4 2 9 9 H 1.48502 * 109.47157 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.47182 * 300.00051 * 8 6 4 11 11 H 1.48501 * 109.47156 * 60.00260 * 8 6 4 12 12 N 1.46494 * 109.47469 * 239.99818 * 2 1 3 13 13 C 1.38573 * 119.99950 * 84.99687 * 12 2 1 14 14 C 1.39465 * 120.51674 * 359.72421 * 13 12 2 15 15 C 1.38470 * 118.31164 * 179.80119 * 14 13 12 16 16 F 1.35103 * 120.42656 * 180.22202 * 15 14 13 17 17 N 1.32784 * 119.13880 * 0.47455 * 15 14 13 18 18 C 1.31763 * 120.96483 * 359.74228 * 17 15 14 19 19 N 1.31761 * 121.85732 * 0.02594 * 18 17 15 20 20 H 1.09000 * 109.47182 * 293.10481 * 1 2 3 21 21 H 1.09001 * 109.47137 * 53.11102 * 1 2 3 22 22 H 1.08998 * 109.47063 * 173.10517 * 1 2 3 23 23 H 0.97002 * 119.99657 * 354.93259 * 7 6 4 24 24 H 0.97003 * 120.00269 * 265.00359 * 12 2 1 25 25 H 1.08000 * 120.83856 * 359.97438 * 14 13 12 26 26 H 1.07998 * 119.06986 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5761 -1.6384 1.1341 6 6 1.7976 -0.1754 2.4795 7 7 1.8074 -0.9527 3.5402 8 14 1.4659 1.6535 2.6648 9 1 1.2470 1.9741 4.0982 10 1 2.6315 2.4218 2.1587 11 1 0.2560 2.0187 1.8851 12 7 2.0184 -0.6906 -1.1961 13 6 2.1507 0.0007 -2.3898 14 6 1.8166 1.3525 -2.4661 15 6 1.9705 1.9995 -3.6806 16 9 1.6641 3.3098 -3.8015 17 7 2.4184 1.3142 -4.7260 18 6 2.7205 0.0361 -4.6199 19 7 2.5932 -0.6164 -3.4823 20 1 -0.3633 0.4033 0.9452 21 1 -0.3633 0.6169 -0.8219 22 1 -0.3633 -1.0202 -0.1234 23 1 1.9063 -1.9122 3.4375 24 1 2.2491 -1.6318 -1.1525 25 1 1.4499 1.8820 -1.5991 26 1 3.0819 -0.4917 -5.4900 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853250940.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:21 Heat of formation + Delta-G solvation = -14.085349 kcal Electronic energy + Delta-G solvation = -13537.701594 eV Core-core repulsion = 10951.370050 eV Total energy + Delta-G solvation = -2586.331544 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.082 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -50.20227 -41.81803 -38.25409 -35.22023 -33.88967 -32.40005 -30.62474 -26.94607 -25.59769 -24.53023 -22.24403 -20.32985 -19.28847 -19.00373 -17.31909 -17.04500 -16.53639 -16.40335 -15.68646 -15.38629 -15.23284 -14.72311 -14.40226 -14.35086 -13.81982 -13.32716 -12.48880 -12.32124 -12.02540 -11.72475 -11.70421 -11.20876 -10.85419 -10.49350 -10.48468 -9.22084 -8.83112 -6.47638 -0.13106 0.21607 1.47947 1.53298 1.70358 2.05825 2.38266 2.45030 2.74629 2.93497 3.28893 3.66853 4.01699 4.24632 4.35005 4.61488 4.65552 4.69765 4.93733 5.33247 5.42065 5.54031 5.61035 5.95316 6.16890 6.48003 6.63570 7.12858 7.27952 8.52688 Molecular weight = 211.08amu Principal moments of inertia in cm(-1) A = 0.042501 B = 0.009227 C = 0.008043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.653313 B = 3033.758727 C = 3480.551759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.251 3.749 3 H 0.043 0.957 4 C -0.629 4.629 5 H 0.033 0.967 6 C 0.002 3.998 7 N -0.919 5.919 8 Si 1.065 2.935 9 H -0.286 1.286 10 H -0.265 1.265 11 H -0.238 1.238 12 N -0.676 5.676 13 C 0.454 3.546 14 C -0.331 4.331 15 C 0.377 3.623 16 F -0.105 7.105 17 N -0.615 5.615 18 C 0.376 3.624 19 N -0.605 5.605 20 H 0.059 0.941 21 H 0.054 0.946 22 H 0.045 0.955 23 H 0.259 0.741 24 H 0.405 0.595 25 H 0.156 0.844 26 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.223 4.959 -12.372 13.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.146 3.854 3 H 0.061 0.939 4 C -0.666 4.666 5 H 0.051 0.949 6 C -0.200 4.200 7 N -0.552 5.552 8 Si 0.885 3.115 9 H -0.212 1.212 10 H -0.190 1.190 11 H -0.162 1.162 12 N -0.301 5.301 13 C 0.208 3.792 14 C -0.361 4.361 15 C 0.220 3.780 16 F -0.083 7.083 17 N -0.342 5.342 18 C 0.087 3.913 19 N -0.332 5.332 20 H 0.078 0.922 21 H 0.072 0.928 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.241 0.759 25 H 0.174 0.826 26 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -1.274 5.815 -11.752 13.174 hybrid contribution 0.205 -1.405 0.033 1.420 sum -1.069 4.410 -11.720 12.568 Atomic orbital electron populations 1.22445 0.97010 1.01116 1.01072 1.19012 0.91648 0.93379 0.81341 0.93925 1.22105 1.41525 1.10511 0.92473 0.94870 1.26959 0.92317 1.09325 0.91432 1.70969 1.45188 1.06100 1.32932 0.83817 0.79462 0.71015 0.77204 1.21199 1.18985 1.16150 1.45114 1.65915 1.13146 1.05937 1.18638 0.85685 0.87947 0.86909 1.21882 1.17791 0.96124 1.00323 1.18033 0.90921 0.79340 0.89747 1.91624 1.89346 1.30947 1.96431 1.67891 1.22491 1.11681 1.32129 1.25285 0.86793 0.84696 0.94516 1.68102 1.24354 1.40753 0.99953 0.92208 0.92752 0.93541 0.93164 0.75874 0.82625 0.73905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.03 9.16 71.98 0.66 -5.37 15 2 C 0.25 10.51 1.85 44.25 0.08 10.59 15 3 H 0.04 1.76 5.10 -2.39 -0.01 1.75 15 4 C -0.63 -32.33 8.95 25.60 0.23 -32.11 15 5 H 0.03 1.88 7.96 -2.91 -0.02 1.86 15 6 C 0.00 0.09 5.19 84.66 0.44 0.53 15 7 N -0.92 -53.39 13.70 21.45 0.29 -53.10 15 8 Si 1.06 44.84 26.44 68.60 1.81 46.66 15 9 H -0.29 -12.37 7.11 99.48 0.71 -11.66 15 10 H -0.26 -10.50 7.11 99.48 0.71 -9.79 15 11 H -0.24 -8.64 6.15 99.48 0.61 -8.03 15 12 N -0.68 -25.78 5.22 -327.72 -1.71 -27.49 15 13 C 0.45 15.82 7.69 133.10 1.02 16.84 15 14 C -0.33 -10.84 8.95 22.62 0.20 -10.64 15 15 C 0.38 11.71 8.50 84.60 0.72 12.43 15 16 F -0.10 -3.08 17.30 44.97 0.78 -2.30 15 17 N -0.61 -18.09 10.45 -201.32 -2.10 -20.19 15 18 C 0.38 9.76 12.28 180.90 2.22 11.98 15 19 N -0.60 -19.07 10.47 -197.69 -2.07 -21.14 15 20 H 0.06 2.34 5.48 -2.39 -0.01 2.33 15 21 H 0.05 1.79 7.65 -2.39 -0.02 1.78 15 22 H 0.05 1.79 8.14 -2.39 -0.02 1.77 15 23 H 0.26 15.26 8.73 -92.71 -0.81 14.45 15 24 H 0.41 15.47 8.65 -92.71 -0.80 14.67 15 25 H 0.16 4.94 6.16 -2.91 -0.02 4.92 15 26 H 0.25 3.84 8.06 -2.91 -0.02 3.81 15 Total: -1.00 -58.32 232.44 2.87 -55.45 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.29 Total: 17.85 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 5.58 Total: 4.27 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -5.59 Total: -121.93 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.78 Total: -2.30 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.81 Total: 46.66 kcal Total: -58.32 2.87 -55.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853250940.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.367 kcal (2) G-P(sol) polarization free energy of solvation -58.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds