Wall clock time and date at job start Sun Mar 29 2020 22:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46643 * 2 1 4 4 C 1.50692 * 109.47045 * 240.00115 * 2 1 3 5 5 H 1.08002 * 120.00435 * 335.27047 * 4 2 1 6 6 C 1.37885 * 119.99879 * 155.27367 * 4 2 1 7 7 N 1.31512 * 119.99754 * 5.45737 * 6 4 2 8 8 Si 1.86797 * 119.99878 * 185.45406 * 6 4 2 9 9 H 1.48496 * 109.47417 * 269.99944 * 8 6 4 10 10 H 1.48497 * 109.47145 * 30.00841 * 8 6 4 11 11 H 1.48510 * 109.46922 * 150.00000 * 8 6 4 12 12 N 1.46500 * 109.47254 * 119.99924 * 2 1 3 13 13 C 1.38573 * 119.99714 * 275.00320 * 12 2 1 14 14 C 1.39462 * 120.51687 * 359.72099 * 13 12 2 15 15 C 1.38474 * 118.31008 * 179.80064 * 14 13 12 16 16 F 1.35095 * 120.43253 * 180.21673 * 15 14 13 17 17 N 1.32787 * 119.13707 * 0.47889 * 15 14 13 18 18 C 1.31766 * 120.96475 * 359.73603 * 17 15 14 19 19 N 1.31759 * 121.85685 * 0.02903 * 18 17 15 20 20 H 1.09000 * 109.47134 * 55.04917 * 1 2 3 21 21 H 1.09000 * 109.46661 * 175.04893 * 1 2 3 22 22 H 1.08998 * 109.47207 * 295.05045 * 1 2 3 23 23 H 0.96996 * 120.00598 * 355.06476 * 7 6 4 24 24 H 0.97000 * 119.99839 * 94.99768 * 12 2 1 25 25 H 1.07995 * 120.84712 * 0.02562 * 14 13 12 26 26 H 1.07999 * 119.07033 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 1.4114 -1.4454 -1.7210 6 6 3.2847 -0.4220 -1.7300 7 7 4.0828 0.3919 -1.0741 8 14 3.8478 -1.1874 -3.3382 9 1 4.5280 -2.4779 -3.0608 10 1 2.6708 -1.4259 -4.2117 11 1 4.7922 -0.2667 -4.0207 12 7 2.0184 -0.6906 1.1962 13 6 2.1507 0.0008 2.3898 14 6 1.8275 1.3554 2.4631 15 6 1.9730 2.0003 3.6799 16 9 1.6682 3.3109 3.8004 17 7 2.4209 1.3151 4.7254 18 6 2.7212 0.0365 4.6197 19 7 2.5931 -0.6163 3.4823 20 1 -0.3633 0.5887 -0.8423 21 1 -0.3633 -1.0239 -0.0887 22 1 -0.3633 0.4351 0.9310 23 1 3.7653 0.8451 -0.2775 24 1 2.2491 -1.6318 1.1526 25 1 1.4695 1.8871 1.5940 26 1 3.0826 -0.4913 5.4898 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853250941.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:23 Heat of formation + Delta-G solvation = -5.327112 kcal Electronic energy + Delta-G solvation = -13622.900642 eV Core-core repulsion = 11036.948884 eV Total energy + Delta-G solvation = -2585.951759 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.082 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.75509 -40.25760 -36.57667 -33.38807 -32.07671 -30.66034 -28.89958 -24.96695 -24.12001 -22.92403 -21.01909 -18.32688 -17.84732 -16.89013 -15.84108 -15.39738 -14.93045 -14.57544 -14.08035 -13.89840 -13.66198 -13.51526 -13.09333 -12.34446 -11.53169 -11.27463 -11.01098 -10.93572 -10.36015 -10.29580 -9.99380 -9.31496 -9.02403 -8.92970 -8.81131 -7.39831 -6.76472 -4.59524 1.35972 1.80711 3.25332 3.28538 3.45410 3.72684 3.90159 4.24932 4.26585 4.67901 5.04044 5.37370 5.56792 5.80550 5.93775 6.06356 6.23743 6.27783 6.58417 6.87743 6.91046 7.18842 7.53844 7.97460 8.03683 8.35706 8.48320 8.71659 9.20736 10.60804 Molecular weight = 211.08amu Principal moments of inertia in cm(-1) A = 0.043465 B = 0.008461 C = 0.008331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.048774 B = 3308.631115 C = 3360.220671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.232 3.768 3 H 0.050 0.950 4 C -0.606 4.606 5 H 0.062 0.938 6 C 0.032 3.968 7 N -0.880 5.880 8 Si 1.075 2.925 9 H -0.284 1.284 10 H -0.284 1.284 11 H -0.281 1.281 12 N -0.666 5.666 13 C 0.456 3.544 14 C -0.321 4.321 15 C 0.370 3.630 16 F -0.113 7.113 17 N -0.616 5.616 18 C 0.366 3.634 19 N -0.598 5.598 20 H 0.057 0.943 21 H 0.047 0.953 22 H 0.031 0.969 23 H 0.275 0.725 24 H 0.399 0.601 25 H 0.148 0.852 26 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.812 -0.259 4.584 5.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.133 3.867 3 H 0.068 0.932 4 C -0.644 4.644 5 H 0.080 0.920 6 C -0.178 4.178 7 N -0.513 5.513 8 Si 0.901 3.099 9 H -0.211 1.211 10 H -0.210 1.210 11 H -0.207 1.207 12 N -0.292 5.292 13 C 0.209 3.791 14 C -0.352 4.352 15 C 0.214 3.786 16 F -0.092 7.092 17 N -0.344 5.344 18 C 0.075 3.925 19 N -0.325 5.325 20 H 0.076 0.924 21 H 0.066 0.934 22 H 0.051 0.949 23 H 0.086 0.914 24 H 0.236 0.764 25 H 0.166 0.834 26 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -2.332 -0.659 4.019 4.693 hybrid contribution -1.512 0.513 0.460 1.661 sum -3.843 -0.146 4.478 5.903 Atomic orbital electron populations 1.22102 0.97845 1.00973 0.99570 1.19196 0.90342 0.94734 0.82454 0.93222 1.22103 1.05083 1.27437 1.09822 0.91984 1.26148 0.93009 0.95696 1.02943 1.70768 1.36654 1.25463 1.18408 0.83452 0.75940 0.76138 0.74324 1.21069 1.20993 1.20668 1.47285 1.63341 1.13211 1.05343 1.18891 0.84932 0.87926 0.87378 1.21772 1.17779 0.96390 0.99283 1.17970 0.91648 0.79005 0.89974 1.91588 1.89633 1.31467 1.96521 1.67735 1.23058 1.11046 1.32569 1.24297 0.88735 0.85202 0.94261 1.68101 1.24226 1.40466 0.99745 0.92387 0.93398 0.94945 0.91364 0.76446 0.83425 0.78715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.44 37.16 0.35 -2.46 15 2 C 0.23 5.17 1.83 -69.08 -0.13 5.04 15 3 H 0.05 1.19 5.31 -51.93 -0.28 0.92 15 4 C -0.61 -14.97 8.50 -34.44 -0.29 -15.27 15 5 H 0.06 1.52 7.81 -52.49 -0.41 1.11 15 6 C 0.03 0.82 5.45 -17.82 -0.10 0.72 15 7 N -0.88 -24.43 13.63 55.43 0.76 -23.67 15 8 Si 1.07 22.82 29.91 -169.99 -5.08 17.73 15 9 H -0.28 -5.90 7.11 56.52 0.40 -5.49 15 10 H -0.28 -5.72 7.11 56.52 0.40 -5.31 15 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 12 N -0.67 -14.19 5.22 -54.93 -0.29 -14.48 15 13 C 0.46 9.35 7.69 -154.76 -1.19 8.16 15 14 C -0.32 -6.30 8.94 -39.04 -0.35 -6.65 15 15 C 0.37 7.00 8.50 -17.05 -0.14 6.86 15 16 F -0.11 -2.02 17.30 2.25 0.04 -1.98 15 17 N -0.62 -11.28 10.45 -14.98 -0.16 -11.44 15 18 C 0.37 6.16 12.28 -92.21 -1.13 5.03 15 19 N -0.60 -11.51 10.47 -13.84 -0.14 -11.66 15 20 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 21 H 0.05 0.90 8.14 -51.93 -0.42 0.47 15 22 H 0.03 0.58 7.83 -51.93 -0.41 0.17 15 23 H 0.27 7.68 6.78 -40.82 -0.28 7.41 15 24 H 0.40 8.51 8.72 -40.82 -0.36 8.16 15 25 H 0.15 2.84 6.35 -52.49 -0.33 2.51 15 26 H 0.20 2.39 8.06 -52.49 -0.42 1.97 15 LS Contribution 238.05 15.07 3.59 3.59 Total: -1.00 -27.17 238.05 -6.39 -33.56 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -2.12 Total: 6.91 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -2.98 Total: 1.43 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: 0.17 Total: -61.25 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.08 Total: 17.73 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -27.17 -6.39 -33.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853250941.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.237 kcal (2) G-P(sol) polarization free energy of solvation -27.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds