Wall clock time and date at job start Sun Mar 29 2020 22:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46643 * 2 1 4 4 C 1.50692 * 109.47045 * 240.00115 * 2 1 3 5 5 H 1.08002 * 120.00435 * 335.27047 * 4 2 1 6 6 C 1.37885 * 119.99879 * 155.27367 * 4 2 1 7 7 N 1.31512 * 119.99754 * 5.45737 * 6 4 2 8 8 Si 1.86797 * 119.99878 * 185.45406 * 6 4 2 9 9 H 1.48496 * 109.47417 * 269.99944 * 8 6 4 10 10 H 1.48497 * 109.47145 * 30.00841 * 8 6 4 11 11 H 1.48510 * 109.46922 * 150.00000 * 8 6 4 12 12 N 1.46500 * 109.47254 * 119.99924 * 2 1 3 13 13 C 1.38573 * 119.99714 * 275.00320 * 12 2 1 14 14 C 1.39462 * 120.51687 * 359.72099 * 13 12 2 15 15 C 1.38474 * 118.31008 * 179.80064 * 14 13 12 16 16 F 1.35095 * 120.43253 * 180.21673 * 15 14 13 17 17 N 1.32787 * 119.13707 * 0.47889 * 15 14 13 18 18 C 1.31766 * 120.96475 * 359.73603 * 17 15 14 19 19 N 1.31759 * 121.85685 * 0.02903 * 18 17 15 20 20 H 1.09000 * 109.47134 * 55.04917 * 1 2 3 21 21 H 1.09000 * 109.46661 * 175.04893 * 1 2 3 22 22 H 1.08998 * 109.47207 * 295.05045 * 1 2 3 23 23 H 0.96996 * 120.00598 * 355.06476 * 7 6 4 24 24 H 0.97000 * 119.99839 * 94.99768 * 12 2 1 25 25 H 1.07995 * 120.84712 * 0.02562 * 14 13 12 26 26 H 1.07999 * 119.07033 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 1.4114 -1.4454 -1.7210 6 6 3.2847 -0.4220 -1.7300 7 7 4.0828 0.3919 -1.0741 8 14 3.8478 -1.1874 -3.3382 9 1 4.5280 -2.4779 -3.0608 10 1 2.6708 -1.4259 -4.2117 11 1 4.7922 -0.2667 -4.0207 12 7 2.0184 -0.6906 1.1962 13 6 2.1507 0.0008 2.3898 14 6 1.8275 1.3554 2.4631 15 6 1.9730 2.0003 3.6799 16 9 1.6682 3.3109 3.8004 17 7 2.4209 1.3151 4.7254 18 6 2.7212 0.0365 4.6197 19 7 2.5931 -0.6163 3.4823 20 1 -0.3633 0.5887 -0.8423 21 1 -0.3633 -1.0239 -0.0887 22 1 -0.3633 0.4351 0.9310 23 1 3.7653 0.8451 -0.2775 24 1 2.2491 -1.6318 1.1526 25 1 1.4695 1.8871 1.5940 26 1 3.0826 -0.4913 5.4898 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853250941.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:23 Heat of formation + Delta-G solvation = -21.531507 kcal Electronic energy + Delta-G solvation = -13623.603318 eV Core-core repulsion = 11036.948884 eV Total energy + Delta-G solvation = -2586.654434 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.082 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -50.22984 -41.76518 -38.25573 -35.11688 -33.71419 -32.27035 -30.51034 -26.83440 -25.59347 -24.51766 -22.71943 -19.96308 -19.40137 -18.61661 -17.32789 -16.99233 -16.47732 -16.11692 -15.75413 -15.54289 -15.19239 -15.16385 -14.61736 -13.99894 -13.21265 -12.94207 -12.67523 -12.56591 -11.95689 -11.86548 -11.63077 -10.85272 -10.82266 -10.73296 -10.45743 -9.03929 -8.75986 -6.59980 -0.11896 0.27134 1.56267 1.59981 1.80495 2.15310 2.38889 2.50674 2.77878 3.17670 3.31291 3.77113 4.03128 4.26789 4.37399 4.59820 4.62533 4.69259 4.96994 5.28775 5.40067 5.60786 5.74758 6.05871 6.32684 6.44067 6.75449 7.18396 7.27784 8.60252 Molecular weight = 211.08amu Principal moments of inertia in cm(-1) A = 0.043465 B = 0.008461 C = 0.008331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.048774 B = 3308.631115 C = 3360.220671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.235 3.765 3 H 0.028 0.972 4 C -0.612 4.612 5 H 0.063 0.937 6 C -0.013 4.013 7 N -0.914 5.914 8 Si 1.119 2.881 9 H -0.276 1.276 10 H -0.265 1.265 11 H -0.287 1.287 12 N -0.672 5.672 13 C 0.447 3.553 14 C -0.332 4.332 15 C 0.372 3.628 16 F -0.107 7.107 17 N -0.618 5.618 18 C 0.372 3.628 19 N -0.608 5.608 20 H 0.064 0.936 21 H 0.052 0.948 22 H 0.042 0.958 23 H 0.261 0.739 24 H 0.398 0.602 25 H 0.145 0.855 26 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.191 -0.890 5.104 6.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.135 3.865 3 H 0.046 0.954 4 C -0.650 4.650 5 H 0.081 0.919 6 C -0.216 4.216 7 N -0.549 5.549 8 Si 0.940 3.060 9 H -0.202 1.202 10 H -0.189 1.189 11 H -0.213 1.213 12 N -0.298 5.298 13 C 0.200 3.800 14 C -0.363 4.363 15 C 0.215 3.785 16 F -0.086 7.086 17 N -0.346 5.346 18 C 0.083 3.917 19 N -0.336 5.336 20 H 0.083 0.917 21 H 0.071 0.929 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.234 0.766 25 H 0.163 0.837 26 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -2.732 -1.293 4.571 5.480 hybrid contribution -1.433 0.732 0.432 1.666 sum -4.165 -0.561 5.003 6.534 Atomic orbital electron populations 1.21988 0.95546 1.01505 1.00478 1.19064 0.92049 0.93265 0.82144 0.95400 1.22391 1.04884 1.27019 1.10734 0.91892 1.27384 0.93598 0.95465 1.05137 1.70892 1.37477 1.27624 1.18911 0.82893 0.76161 0.75520 0.71398 1.20171 1.18948 1.21332 1.46765 1.64443 1.13004 1.05605 1.18951 0.85325 0.88167 0.87522 1.21762 1.18596 0.96267 0.99672 1.18046 0.91238 0.79266 0.89928 1.91600 1.89487 1.31061 1.96477 1.67873 1.22968 1.11655 1.32100 1.25272 0.86964 0.84786 0.94720 1.68153 1.24481 1.40871 1.00049 0.91681 0.92927 0.93866 0.92831 0.76609 0.83711 0.74032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 9.44 71.98 0.68 -4.43 15 2 C 0.24 10.48 1.83 44.24 0.08 10.56 15 3 H 0.03 1.37 5.31 -2.39 -0.01 1.36 15 4 C -0.61 -30.10 8.50 25.60 0.22 -29.88 15 5 H 0.06 3.03 7.81 -2.91 -0.02 3.01 15 6 C -0.01 -0.65 5.45 84.66 0.46 -0.19 15 7 N -0.91 -51.52 13.63 21.45 0.29 -51.23 15 8 Si 1.12 45.52 29.91 68.60 2.05 47.57 15 9 H -0.28 -10.78 7.11 99.48 0.71 -10.07 15 10 H -0.26 -9.85 7.11 99.48 0.71 -9.14 15 11 H -0.29 -11.91 7.11 99.48 0.71 -11.20 15 12 N -0.67 -28.55 5.22 -327.71 -1.71 -30.26 15 13 C 0.45 18.06 7.69 133.10 1.02 19.08 15 14 C -0.33 -12.89 8.94 22.62 0.20 -12.69 15 15 C 0.37 13.61 8.50 84.60 0.72 14.33 15 16 F -0.11 -3.70 17.30 44.97 0.78 -2.92 15 17 N -0.62 -21.28 10.45 -201.32 -2.10 -23.38 15 18 C 0.37 11.53 12.28 180.90 2.22 13.75 15 19 N -0.61 -22.43 10.47 -197.70 -2.07 -24.50 15 20 H 0.06 2.31 8.14 -2.39 -0.02 2.29 15 21 H 0.05 1.90 8.14 -2.39 -0.02 1.88 15 22 H 0.04 1.50 7.83 -2.39 -0.02 1.48 15 23 H 0.26 15.00 6.78 -92.71 -0.63 14.38 15 24 H 0.40 16.96 8.72 -92.71 -0.81 16.15 15 25 H 0.15 5.63 6.35 -2.91 -0.02 5.62 15 26 H 0.24 4.93 8.06 -2.91 -0.02 4.91 15 Total: -1.00 -56.95 238.05 3.39 -53.55 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.55 Total: 20.65 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 5.61 Total: 10.52 kcal Atomic # 7 Polarization: -123.78 SS G_CDS: -5.59 Total: -129.37 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.78 Total: -2.92 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.05 Total: 47.57 kcal Total: -56.95 3.39 -53.55 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853250941.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.023 kcal (2) G-P(sol) polarization free energy of solvation -56.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds