Wall clock time and date at job start Sun Mar 29 2020 22:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.39162 * 119.99844 * 180.02562 * 11 10 9 13 13 C 1.39210 * 120.06226 * 359.72961 * 12 11 10 14 14 N 1.32002 * 119.92741 * 179.70839 * 13 12 11 15 15 C 1.32393 * 120.05918 * 0.56149 * 14 13 12 16 16 F 1.35107 * 119.94051 * 179.73227 * 15 14 13 17 17 C 1.38466 * 120.12279 * 359.71694 * 15 14 13 18 18 N 1.32211 * 120.07130 * 359.97438 * 17 15 14 19 19 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 21 21 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 22 22 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 23 23 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 24 24 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 25 25 H 1.08001 * 120.02826 * 359.97438 * 13 12 11 26 26 H 1.08002 * 119.96410 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 2.2087 -6.1359 0.0024 13 6 3.6008 -6.1374 -0.0034 14 7 4.2582 -7.2821 0.0029 15 6 3.5948 -8.4278 0.0034 16 9 4.2701 -9.5980 0.0043 17 6 2.2101 -8.4290 0.0033 18 7 1.5466 -7.2855 0.0032 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5575 -0.8880 21 1 0.6247 -2.5564 0.8919 22 1 2.8714 -3.6047 -0.8890 23 1 2.8726 -3.6039 0.8910 24 1 0.5429 -4.9308 0.0020 25 1 4.1422 -5.2029 -0.0086 26 1 1.6715 -9.3652 0.0032 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853475751.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:55 Heat of formation + Delta-G solvation = 0.152717 kcal Electronic energy + Delta-G solvation = -12887.253955 eV Core-core repulsion = 10301.539819 eV Total energy + Delta-G solvation = -2585.714135 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.082 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.82154 -40.84057 -36.36164 -34.20043 -33.16323 -30.69059 -28.47657 -25.35506 -24.61911 -22.87722 -21.18729 -18.24839 -17.86775 -17.36391 -16.21121 -16.15800 -14.91082 -14.68771 -14.65733 -14.43783 -13.56936 -13.49161 -13.45043 -12.36748 -11.60043 -11.45344 -11.37242 -11.15332 -10.74613 -10.69948 -9.80667 -9.78928 -9.43915 -9.18443 -8.54689 -7.60003 -6.19791 -4.24437 0.86879 1.19500 3.17400 3.22535 3.29875 3.33145 3.62084 3.70074 4.31319 4.35088 4.51239 4.95761 5.16543 5.17572 5.51334 5.88831 5.99397 6.35857 6.44810 6.77678 7.31997 7.43592 7.44608 7.59980 7.76004 7.95937 8.15164 8.81084 9.41405 10.91613 Molecular weight = 211.08amu Principal moments of inertia in cm(-1) A = 0.083730 B = 0.005259 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 334.328823 B = 5323.029864 C = 5636.911145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.014 3.986 10 C 0.119 3.881 11 N -0.695 5.695 12 C 0.355 3.645 13 C 0.025 3.975 14 N -0.430 5.430 15 C 0.160 3.840 16 F -0.117 7.117 17 C 0.100 3.900 18 N -0.491 5.491 19 H 0.264 0.736 20 H 0.025 0.975 21 H 0.025 0.975 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.409 0.591 25 H 0.177 0.823 26 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.814 -12.028 -0.005 12.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.079 0.921 9 C -0.024 4.024 10 C -0.004 4.004 11 N -0.324 5.324 12 C 0.113 3.887 13 C -0.146 4.146 14 N -0.149 5.149 15 C 0.003 3.997 16 F -0.097 7.097 17 C -0.064 4.064 18 N -0.214 5.214 19 H 0.073 0.927 20 H 0.044 0.956 21 H 0.044 0.956 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.245 0.755 25 H 0.194 0.806 26 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.777 -11.744 0.004 12.336 hybrid contribution 0.174 0.692 -0.007 0.713 sum 3.951 -11.052 -0.003 11.737 Atomic orbital electron populations 1.69947 1.06149 1.27112 1.49722 1.25001 0.94895 0.99519 0.94781 0.86494 0.79797 0.82902 0.78263 1.20491 1.21113 1.19679 1.20985 0.93183 0.90187 1.52210 0.92112 1.19301 0.94145 0.90601 0.98340 1.22026 0.96755 0.81095 1.00495 1.45251 1.09749 1.01919 1.75465 1.19597 0.90362 0.87581 0.91113 1.22956 0.90519 0.96035 1.05108 1.67520 1.40889 0.97725 1.08721 1.18697 0.88590 0.82198 1.10233 1.91578 1.81130 1.42488 1.94461 1.23191 0.90090 0.97443 0.95659 1.68074 1.38498 0.96864 1.17978 0.92666 0.95631 0.95619 0.92132 0.92126 0.75509 0.80575 0.80760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.20 13.29 55.43 0.74 -24.46 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 15 3 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 15 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 5 H -0.29 -6.49 7.11 56.52 0.40 -6.08 15 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 7 C -0.53 -13.60 9.11 -34.44 -0.31 -13.92 15 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 15 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 15 10 C 0.12 2.11 4.84 -4.04 -0.02 2.09 15 11 N -0.70 -11.19 5.73 -60.29 -0.35 -11.53 15 12 C 0.36 5.52 7.67 -154.62 -1.19 4.33 15 13 C 0.02 0.37 10.49 -17.12 -0.18 0.19 15 14 N -0.43 -6.73 10.50 -13.24 -0.14 -6.87 15 15 C 0.16 2.28 8.43 -17.23 -0.15 2.13 15 16 F -0.12 -1.60 17.29 2.25 0.04 -1.56 15 17 C 0.10 1.28 11.20 -17.30 -0.19 1.08 15 18 N -0.49 -7.34 10.53 -12.16 -0.13 -7.46 15 19 H 0.26 7.06 8.31 -40.82 -0.34 6.72 15 20 H 0.03 0.62 8.14 -51.93 -0.42 0.20 15 21 H 0.03 0.62 8.14 -51.93 -0.42 0.20 15 22 H 0.06 1.04 7.93 -51.93 -0.41 0.62 15 23 H 0.06 1.04 7.95 -51.93 -0.41 0.63 15 24 H 0.41 6.47 8.60 -40.82 -0.35 6.12 15 25 H 0.18 2.36 6.72 -52.49 -0.35 2.01 15 26 H 0.18 1.56 8.06 -52.49 -0.42 1.14 15 LS Contribution 242.08 15.07 3.65 3.65 Total: -1.00 -28.27 242.08 -5.82 -34.10 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -2.34 Total: 1.12 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -2.28 Total: -2.39 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: 0.12 Total: -50.33 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -28.27 -5.82 -34.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853475751.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.252 kcal (2) G-P(sol) polarization free energy of solvation -28.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds