Wall clock time and date at job start Sun Mar 29 2020 22:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.39162 * 119.99844 * 180.02562 * 11 10 9 13 13 C 1.39210 * 120.06226 * 359.72961 * 12 11 10 14 14 N 1.32002 * 119.92741 * 179.70839 * 13 12 11 15 15 C 1.32393 * 120.05918 * 0.56149 * 14 13 12 16 16 F 1.35107 * 119.94051 * 179.73227 * 15 14 13 17 17 C 1.38466 * 120.12279 * 359.71694 * 15 14 13 18 18 N 1.32211 * 120.07130 * 359.97438 * 17 15 14 19 19 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 21 21 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 22 22 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 23 23 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 24 24 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 25 25 H 1.08001 * 120.02826 * 359.97438 * 13 12 11 26 26 H 1.08002 * 119.96410 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 2.2087 -6.1359 0.0024 13 6 3.6008 -6.1374 -0.0034 14 7 4.2582 -7.2821 0.0029 15 6 3.5948 -8.4278 0.0034 16 9 4.2701 -9.5980 0.0043 17 6 2.2101 -8.4290 0.0033 18 7 1.5466 -7.2855 0.0032 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5575 -0.8880 21 1 0.6247 -2.5564 0.8919 22 1 2.8714 -3.6047 -0.8890 23 1 2.8726 -3.6039 0.8910 24 1 0.5429 -4.9308 0.0020 25 1 4.1422 -5.2029 -0.0086 26 1 1.6715 -9.3652 0.0032 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853475751.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:55 Heat of formation + Delta-G solvation = -18.843539 kcal Electronic energy + Delta-G solvation = -12888.077694 eV Core-core repulsion = 10301.539819 eV Total energy + Delta-G solvation = -2586.537875 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.082 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.91321 -41.98776 -37.72575 -35.49039 -34.91611 -32.24368 -29.89479 -26.83025 -26.00695 -24.18098 -22.79432 -19.46011 -19.01819 -18.80879 -17.90192 -17.28139 -16.55242 -16.01076 -15.95389 -15.73809 -14.85463 -14.83432 -14.59085 -14.20354 -13.19417 -13.04822 -12.75651 -12.60150 -12.49327 -12.26596 -11.61142 -11.37766 -11.10654 -10.56018 -10.32298 -8.81116 -8.22701 -6.33240 -0.21888 0.03049 1.44599 1.45068 1.55713 1.94546 2.43220 2.51542 2.57053 3.13527 3.23919 3.43904 3.79728 4.12321 4.37499 4.48742 4.50889 4.86065 5.21877 5.40029 5.58507 5.58602 5.80909 6.12647 6.26434 6.36701 6.76568 6.84449 7.36969 8.89434 Molecular weight = 211.08amu Principal moments of inertia in cm(-1) A = 0.083730 B = 0.005259 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 334.328823 B = 5323.029864 C = 5636.911145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.072 0.928 9 C 0.018 3.982 10 C 0.139 3.861 11 N -0.699 5.699 12 C 0.348 3.652 13 C 0.020 3.980 14 N -0.450 5.450 15 C 0.157 3.843 16 F -0.113 7.113 17 C 0.114 3.886 18 N -0.502 5.502 19 H 0.264 0.736 20 H 0.003 0.997 21 H 0.003 0.997 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.408 0.592 25 H 0.188 0.812 26 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.862 -12.736 -0.005 13.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.090 0.910 9 C -0.019 4.019 10 C 0.016 3.984 11 N -0.328 5.328 12 C 0.107 3.893 13 C -0.150 4.150 14 N -0.168 5.168 15 C -0.001 4.001 16 F -0.093 7.093 17 C -0.050 4.050 18 N -0.225 5.225 19 H 0.073 0.927 20 H 0.021 0.979 21 H 0.022 0.978 22 H 0.089 0.911 23 H 0.088 0.912 24 H 0.244 0.756 25 H 0.205 0.795 26 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 4.847 -12.469 0.004 13.378 hybrid contribution -0.154 0.767 -0.008 0.782 sum 4.693 -11.702 -0.004 12.608 Atomic orbital electron populations 1.70077 1.07799 1.27912 1.51293 1.25907 0.95678 1.03308 0.94633 0.85450 0.78762 0.78473 0.78400 1.19960 1.21266 1.18422 1.21504 0.94015 0.91385 1.51006 0.91018 1.19128 0.94533 0.92119 0.96126 1.21616 0.95237 0.80120 1.01451 1.44982 1.09583 1.01759 1.76513 1.19607 0.90572 0.87466 0.91648 1.23074 0.90303 0.96382 1.05247 1.67501 1.41633 0.98347 1.09354 1.18934 0.89273 0.81995 1.09863 1.91590 1.81163 1.42169 1.94379 1.23762 0.89657 0.98094 0.93499 1.68111 1.38971 0.97259 1.18133 0.92738 0.97860 0.97849 0.91141 0.91167 0.75579 0.79486 0.76756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.48 13.29 21.45 0.28 -53.20 15 2 C 0.00 0.17 5.46 84.66 0.46 0.64 15 3 Si 0.96 41.60 29.54 68.60 2.03 43.63 15 4 H -0.27 -11.52 7.11 99.48 0.71 -10.82 15 5 H -0.29 -12.34 7.11 99.48 0.71 -11.63 15 6 H -0.26 -10.63 7.11 99.48 0.71 -9.92 15 7 C -0.54 -27.78 9.11 25.60 0.23 -27.54 15 8 H 0.07 3.44 7.74 -2.91 -0.02 3.42 15 9 C 0.02 0.86 5.09 29.85 0.15 1.01 15 10 C 0.14 4.82 4.84 86.38 0.42 5.24 15 11 N -0.70 -22.00 5.73 -344.67 -1.98 -23.98 15 12 C 0.35 10.30 7.67 132.95 1.02 11.32 15 13 C 0.02 0.55 10.49 84.90 0.89 1.44 15 14 N -0.45 -13.31 10.50 -195.82 -2.06 -15.36 15 15 C 0.16 4.12 8.43 84.66 0.71 4.83 15 16 F -0.11 -2.83 17.29 44.97 0.78 -2.06 15 17 C 0.11 2.58 11.20 84.69 0.95 3.53 15 18 N -0.50 -14.00 10.53 -192.39 -2.03 -16.02 15 19 H 0.26 14.36 8.31 -92.71 -0.77 13.59 15 20 H 0.00 0.15 8.14 -2.39 -0.02 0.13 15 21 H 0.00 0.16 8.14 -2.39 -0.02 0.14 15 22 H 0.07 2.31 7.93 -2.39 -0.02 2.29 15 23 H 0.07 2.31 7.95 -2.39 -0.02 2.29 15 24 H 0.41 12.89 8.60 -92.71 -0.80 12.09 15 25 H 0.19 4.72 6.72 -2.91 -0.02 4.70 15 26 H 0.22 2.98 8.06 -2.91 -0.02 2.96 15 Total: -1.00 -59.55 242.08 2.28 -57.27 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 0.41 Total: 9.25 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 4.84 Total: 0.46 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -5.77 Total: -108.56 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.78 Total: -2.06 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -59.55 2.28 -57.27 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853475751.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.430 kcal (2) G-P(sol) polarization free energy of solvation -59.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds