Wall clock time and date at job start Sun Mar 29 2020 22:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00186 * 2 1 4 4 H 1.48499 * 109.47036 * 269.99505 * 3 2 1 5 5 H 1.48495 * 109.47276 * 29.99426 * 3 2 1 6 6 H 1.48503 * 109.47113 * 150.00034 * 3 2 1 7 7 C 1.37883 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99667 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99751 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46547 * 180.02562 * 9 7 2 11 11 N 1.46507 * 109.46700 * 179.97438 * 10 9 7 12 12 C 1.38574 * 119.99854 * 180.02562 * 11 10 9 13 13 C 1.39465 * 120.51526 * 0.02562 * 12 11 10 14 14 C 1.38474 * 118.31403 * 179.97438 * 13 12 11 15 15 F 1.35099 * 120.43105 * 179.97438 * 14 13 12 16 16 N 1.32789 * 119.13326 * 359.97438 * 14 13 12 17 17 C 1.31755 * 120.96726 * 0.02562 * 16 14 13 18 18 N 1.31766 * 121.85997 * 359.97438 * 17 16 14 19 19 H 0.96998 * 119.99365 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47157 * 60.00352 * 9 7 2 21 21 H 1.09000 * 109.47201 * 299.99742 * 9 7 2 22 22 H 1.09000 * 109.47107 * 60.00318 * 10 9 7 23 23 H 1.08991 * 109.47735 * 299.99731 * 10 9 7 24 24 H 0.96996 * 119.99755 * 0.02562 * 11 10 9 25 25 H 1.08005 * 120.84435 * 359.70271 * 13 12 11 26 26 H 1.08002 * 119.07164 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0010 11 7 5.4865 -2.6366 0.0009 12 6 6.1793 -3.8368 0.0003 13 6 5.4929 -5.0508 -0.0009 14 6 6.2307 -6.2225 -0.0020 15 9 5.6096 -7.4223 -0.0026 16 7 7.5567 -6.1515 -0.0025 17 6 8.1733 -4.9871 -0.0014 18 7 7.5097 -3.8487 -0.0003 19 1 -0.4849 0.8401 -0.0004 20 1 3.8746 -0.6801 0.8912 21 1 3.8753 -0.6805 -0.8889 22 1 3.6585 -3.1502 -0.8893 23 1 3.6578 -3.1507 0.8906 24 1 5.9715 -1.7966 0.0014 25 1 4.4131 -5.0764 0.0036 26 1 9.2531 -4.9651 -0.0014 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853475865.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:56 Heat of formation + Delta-G solvation = -17.675448 kcal Electronic energy + Delta-G solvation = -12988.896114 eV Core-core repulsion = 10402.408891 eV Total energy + Delta-G solvation = -2586.487223 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.082 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -50.22705 -41.84170 -38.01112 -35.29956 -34.01078 -32.73346 -31.01144 -27.05315 -25.42347 -24.10732 -22.61983 -19.77227 -19.31624 -18.83217 -17.36572 -16.86518 -16.59285 -16.21397 -16.12397 -16.09674 -15.22030 -15.00387 -14.75940 -14.55278 -13.42836 -13.32692 -12.57661 -12.12735 -11.94548 -11.83101 -11.72233 -11.48318 -10.86720 -10.78018 -10.53009 -9.29654 -8.31256 -6.37684 -0.16843 0.15902 1.38544 1.40258 1.50536 1.89825 2.34955 2.35231 2.71166 3.04652 3.25301 3.61657 4.01401 4.12462 4.30786 4.38607 4.58956 4.72624 5.03550 5.30397 5.36834 5.48685 5.59942 6.04968 6.18678 6.47687 6.71373 7.08040 7.27437 8.84722 Molecular weight = 211.08amu Principal moments of inertia in cm(-1) A = 0.056543 B = 0.006169 C = 0.005585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.083657 B = 4537.940999 C = 5012.579004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.950 3.050 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.241 1.241 7 C -0.534 4.534 8 H 0.041 0.959 9 C -0.017 4.017 10 C 0.143 3.857 11 N -0.692 5.692 12 C 0.455 3.545 13 C -0.325 4.325 14 C 0.374 3.626 15 F -0.107 7.107 16 N -0.613 5.613 17 C 0.376 3.624 18 N -0.597 5.597 19 H 0.267 0.733 20 H 0.033 0.967 21 H 0.031 0.969 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.415 0.585 25 H 0.158 0.842 26 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.176 -6.474 0.030 16.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.190 4.190 3 Si 0.774 3.226 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.165 1.165 7 C -0.572 4.572 8 H 0.059 0.941 9 C -0.055 4.055 10 C 0.020 3.980 11 N -0.321 5.321 12 C 0.210 3.790 13 C -0.355 4.355 14 C 0.217 3.783 15 F -0.085 7.085 16 N -0.340 5.340 17 C 0.088 3.912 18 N -0.323 5.323 19 H 0.076 0.924 20 H 0.051 0.949 21 H 0.050 0.950 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.252 0.748 25 H 0.176 0.824 26 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 15.665 -6.378 0.033 16.914 hybrid contribution -1.283 0.658 -0.022 1.442 sum 14.383 -5.720 0.011 15.478 Atomic orbital electron populations 1.70050 1.08373 1.28329 1.51984 1.25965 0.95570 1.03515 0.93941 0.85658 0.79635 0.78184 0.79142 1.19293 1.21433 1.16466 1.21209 0.91160 0.93619 1.51231 0.94085 1.19651 0.94647 0.93244 0.97948 1.21409 0.75987 0.99204 1.01430 1.44885 1.06746 1.05058 1.75425 1.18485 0.88234 0.86704 0.85557 1.21903 1.03588 0.91127 1.18874 1.18101 0.88020 0.80506 0.91686 1.91632 1.80903 1.43429 1.92585 1.67896 1.08450 1.32840 1.24796 1.25314 1.01832 0.79168 0.84914 1.68098 1.06408 1.32948 1.24848 0.92373 0.94899 0.95042 0.91665 0.91667 0.74774 0.82429 0.73825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.91 13.96 21.45 0.30 -56.61 15 2 C 0.01 0.43 5.47 84.66 0.46 0.89 15 3 Si 0.95 41.26 27.47 68.60 1.88 43.15 15 4 H -0.27 -11.24 7.11 99.48 0.71 -10.53 15 5 H -0.29 -12.56 7.11 99.48 0.71 -11.86 15 6 H -0.24 -9.45 6.54 99.48 0.65 -8.80 15 7 C -0.53 -28.27 9.66 25.60 0.25 -28.02 15 8 H 0.04 2.39 7.99 -2.91 -0.02 2.36 15 9 C -0.02 -0.70 4.16 29.85 0.12 -0.57 15 10 C 0.14 4.81 4.86 86.38 0.42 5.23 15 11 N -0.69 -19.91 5.71 -344.66 -1.97 -21.88 15 12 C 0.46 12.90 7.71 133.10 1.03 13.93 15 13 C -0.32 -9.06 9.39 22.62 0.21 -8.85 15 14 C 0.37 10.39 8.50 84.60 0.72 11.11 15 15 F -0.11 -2.92 17.30 44.97 0.78 -2.14 15 16 N -0.61 -16.02 10.45 -201.31 -2.10 -18.12 15 17 C 0.38 8.20 12.28 180.90 2.22 10.42 15 18 N -0.60 -15.44 10.47 -197.70 -2.07 -17.51 15 19 H 0.27 15.02 8.31 -92.71 -0.77 14.25 15 20 H 0.03 1.31 7.20 -2.39 -0.02 1.29 15 21 H 0.03 1.23 7.57 -2.39 -0.02 1.21 15 22 H 0.07 2.21 7.97 -2.39 -0.02 2.19 15 23 H 0.07 2.21 7.97 -2.39 -0.02 2.19 15 24 H 0.41 10.98 8.60 -92.71 -0.80 10.18 15 25 H 0.16 4.24 6.86 -2.91 -0.02 4.22 15 26 H 0.25 2.92 8.06 -2.91 -0.02 2.90 15 Total: -1.00 -61.98 238.66 2.61 -59.37 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.36 Total: 9.61 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 5.43 Total: 4.14 kcal Atomic # 7 Polarization: -108.28 SS G_CDS: -5.84 Total: -114.12 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.78 Total: -2.14 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 1.88 Total: 43.15 kcal Total: -61.98 2.61 -59.37 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853475865.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.693 kcal (2) G-P(sol) polarization free energy of solvation -61.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds