Wall clock time and date at job start Sun Mar 29 2020 21:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48490 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46716 * 300.00150 * 3 2 1 6 6 H 1.48500 * 109.46999 * 59.99848 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00072 * 179.97438 * 10 9 7 12 12 O 1.21583 * 120.00212 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99868 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00109 * 180.02562 * 13 11 10 15 15 H 1.09000 * 110.34183 * 34.30070 * 14 13 11 16 16 C 1.51104 * 110.38837 * 272.01364 * 14 13 11 17 17 C 1.30801 * 110.94791 * 257.62431 * 16 14 13 18 18 C 1.51098 * 111.14958 * 359.94810 * 17 16 14 19 19 C 1.54635 * 104.72833 * 343.59652 * 18 17 16 20 20 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 22 22 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 23 23 H 0.97001 * 119.99251 * 0.02562 * 10 9 7 24 24 H 0.97006 * 119.99964 * 0.02562 * 13 11 10 25 25 H 1.08003 * 124.44800 * 77.58248 * 16 14 13 26 26 H 1.07994 * 124.40548 * 179.97438 * 17 16 14 27 27 H 1.09006 * 110.38820 * 224.78328 * 18 17 16 28 28 H 1.09002 * 110.48906 * 102.45687 * 18 17 16 29 29 H 1.09000 * 111.03914 * 266.59957 * 19 18 17 30 30 H 1.09000 * 111.07588 * 142.67815 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5584 -5.1056 0.0020 13 7 2.6296 -5.9078 0.0005 14 6 2.1412 -7.2890 0.0005 15 1 1.2187 -7.3647 -0.5750 16 6 1.9195 -7.7689 1.4161 17 6 2.8963 -8.5473 1.8044 18 6 3.9271 -8.7146 0.7124 19 6 3.2156 -8.2402 -0.5760 20 1 -0.4849 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 3.1567 -3.4354 0.0009 24 1 3.5833 -5.7305 0.0002 25 1 1.0679 -7.5032 2.0249 26 1 2.9574 -9.0102 2.7782 27 1 4.2182 -9.7612 0.6220 28 1 4.8006 -8.0944 0.9140 29 1 2.7557 -9.0779 -1.1002 30 1 3.9038 -7.7033 -1.2288 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854024830.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:10 Heat of formation + Delta-G solvation = -19.270332 kcal Electronic energy + Delta-G solvation = -13384.055496 eV Core-core repulsion = 10986.385330 eV Total energy + Delta-G solvation = -2397.670166 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.69022 -37.89864 -34.09046 -33.09414 -32.11732 -29.03284 -27.75525 -26.28315 -22.64870 -20.76291 -20.22552 -18.72324 -18.11098 -16.39932 -15.88365 -15.57814 -14.81251 -14.52043 -14.12394 -13.49164 -13.01891 -12.43396 -12.01281 -11.93099 -11.74625 -11.56178 -11.39964 -11.03612 -10.88987 -10.86643 -10.27555 -9.47312 -9.32244 -8.99326 -8.73792 -8.64946 -7.71661 -6.12814 -4.19117 2.17590 3.25783 3.32359 3.35574 3.59050 3.99661 4.35613 4.52799 4.65726 5.01557 5.17670 5.23333 5.30259 5.41445 5.63885 5.74567 5.83454 5.97239 6.11310 6.50961 6.83483 6.97680 7.18146 7.56477 7.59952 7.61086 7.95456 8.08792 8.80496 8.99973 9.38272 9.52666 10.97578 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.070353 B = 0.005698 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.896928 B = 4912.808817 C = 5073.874962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.730 5.730 11 C 0.693 3.307 12 O -0.601 6.601 13 N -0.746 5.746 14 C 0.181 3.819 15 H 0.091 0.909 16 C -0.161 4.161 17 C -0.168 4.168 18 C -0.101 4.101 19 C -0.133 4.133 20 H 0.265 0.735 21 H 0.024 0.976 22 H 0.024 0.976 23 H 0.386 0.614 24 H 0.390 0.610 25 H 0.124 0.876 26 H 0.122 0.878 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.067 -14.555 0.679 17.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.382 5.382 11 C 0.392 3.608 12 O -0.480 6.480 13 N -0.402 5.402 14 C 0.076 3.924 15 H 0.110 0.890 16 C -0.181 4.181 17 C -0.188 4.188 18 C -0.138 4.138 19 C -0.171 4.171 20 H 0.075 0.925 21 H 0.042 0.958 22 H 0.042 0.958 23 H 0.218 0.782 24 H 0.223 0.777 25 H 0.142 0.858 26 H 0.140 0.860 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.754 -14.565 0.649 16.513 hybrid contribution 1.242 1.132 0.176 1.690 sum 8.996 -13.433 0.825 16.188 Atomic orbital electron populations 1.69994 1.06092 1.27114 1.49144 1.24948 0.94906 0.99396 0.94810 0.86359 0.79794 0.83007 0.77715 1.19686 1.20823 1.20823 1.21272 0.93293 0.90461 1.52860 0.91924 1.18979 0.87814 0.81115 0.97578 1.45716 1.10722 1.04448 1.77332 1.16188 0.85283 0.81074 0.78205 1.90859 1.14262 1.84201 1.58694 1.45198 1.08599 1.04510 1.81904 1.20426 0.97780 0.80478 0.93741 0.89049 1.23826 0.98997 0.97094 0.98142 1.23337 0.96011 1.00299 0.99111 1.21383 0.97813 1.01380 0.93189 1.22731 0.97906 0.99174 0.97254 0.92542 0.95767 0.95781 0.78229 0.77662 0.85764 0.86006 0.91143 0.90802 0.89872 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.54 -14.95 9.28 -34.44 -0.32 -15.27 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.23 16 9 C 0.27 7.30 5.43 -5.19 -0.03 7.27 16 10 N -0.73 -16.10 5.55 -66.41 -0.37 -16.47 16 11 C 0.69 14.80 8.56 -86.92 -0.74 14.06 16 12 O -0.60 -15.45 16.02 5.29 0.08 -15.37 16 13 N -0.75 -11.67 5.10 -58.77 -0.30 -11.97 16 14 C 0.18 2.52 3.21 -68.02 -0.22 2.30 16 15 H 0.09 1.46 7.60 -51.93 -0.39 1.06 16 16 C -0.16 -2.17 10.43 -35.77 -0.37 -2.54 16 17 C -0.17 -1.82 10.78 -35.78 -0.39 -2.20 16 18 C -0.10 -0.91 6.81 -26.83 -0.18 -1.09 16 19 C -0.13 -1.30 6.79 -25.01 -0.17 -1.47 16 20 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 21 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.39 7.27 8.34 -40.82 -0.34 6.93 16 24 H 0.39 4.95 8.61 -40.82 -0.35 4.59 16 25 H 0.12 1.82 8.06 -52.48 -0.42 1.39 16 26 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.72 8.04 -51.93 -0.42 0.30 16 LS Contribution 262.89 15.07 3.96 3.96 Total: -1.00 -32.92 262.89 -7.42 -40.34 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -4.00 Total: 6.48 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -2.52 Total: 2.73 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.07 Total: -54.21 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.08 Total: -15.37 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.92 -7.42 -40.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854024830.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.071 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds