Wall clock time and date at job start Sun Mar 29 2020 21:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48490 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46716 * 300.00150 * 3 2 1 6 6 H 1.48500 * 109.46999 * 59.99848 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00072 * 179.97438 * 10 9 7 12 12 O 1.21583 * 120.00212 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99868 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00109 * 180.02562 * 13 11 10 15 15 H 1.09000 * 110.34183 * 34.30070 * 14 13 11 16 16 C 1.51104 * 110.38837 * 272.01364 * 14 13 11 17 17 C 1.30801 * 110.94791 * 257.62431 * 16 14 13 18 18 C 1.51098 * 111.14958 * 359.94810 * 17 16 14 19 19 C 1.54635 * 104.72833 * 343.59652 * 18 17 16 20 20 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 22 22 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 23 23 H 0.97001 * 119.99251 * 0.02562 * 10 9 7 24 24 H 0.97006 * 119.99964 * 0.02562 * 13 11 10 25 25 H 1.08003 * 124.44800 * 77.58248 * 16 14 13 26 26 H 1.07994 * 124.40548 * 179.97438 * 17 16 14 27 27 H 1.09006 * 110.38820 * 224.78328 * 18 17 16 28 28 H 1.09002 * 110.48906 * 102.45687 * 18 17 16 29 29 H 1.09000 * 111.03914 * 266.59957 * 19 18 17 30 30 H 1.09000 * 111.07588 * 142.67815 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5584 -5.1056 0.0020 13 7 2.6296 -5.9078 0.0005 14 6 2.1412 -7.2890 0.0005 15 1 1.2187 -7.3647 -0.5750 16 6 1.9195 -7.7689 1.4161 17 6 2.8963 -8.5473 1.8044 18 6 3.9271 -8.7146 0.7124 19 6 3.2156 -8.2402 -0.5760 20 1 -0.4849 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 3.1567 -3.4354 0.0009 24 1 3.5833 -5.7305 0.0002 25 1 1.0679 -7.5032 2.0249 26 1 2.9574 -9.0102 2.7782 27 1 4.2182 -9.7612 0.6220 28 1 4.8006 -8.0944 0.9140 29 1 2.7557 -9.0779 -1.1002 30 1 3.9038 -7.7033 -1.2288 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854024830.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:10 Heat of formation + Delta-G solvation = -43.930411 kcal Electronic energy + Delta-G solvation = -13385.124837 eV Core-core repulsion = 10986.385330 eV Total energy + Delta-G solvation = -2398.739507 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.14804 -39.20697 -36.11222 -34.70508 -34.01904 -29.94310 -29.47013 -27.72027 -24.67819 -22.07323 -21.64467 -19.92802 -19.66539 -18.09766 -17.49338 -16.82428 -16.58068 -16.22399 -15.53817 -15.01160 -14.61805 -14.13795 -14.03699 -13.22141 -12.89097 -12.81858 -12.74036 -12.46551 -12.23172 -12.20761 -11.94648 -11.44411 -11.28283 -10.81432 -10.26376 -9.99573 -9.59110 -8.28279 -6.44981 1.16698 1.44027 1.45715 1.59143 2.08006 2.26101 2.41227 3.06772 3.60532 3.62572 3.76370 4.24622 4.39131 4.55652 4.74249 4.90775 4.99055 5.07939 5.18077 5.24908 5.26575 5.49286 5.58406 5.63274 5.70143 5.85256 5.89936 6.29614 6.67292 7.24716 7.34120 7.74637 8.84569 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.070353 B = 0.005698 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.896928 B = 4912.808817 C = 5073.874962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.988 3.012 4 H -0.253 1.253 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.285 3.715 10 N -0.724 5.724 11 C 0.689 3.311 12 O -0.651 6.651 13 N -0.720 5.720 14 C 0.172 3.828 15 H 0.060 0.940 16 C -0.210 4.210 17 C -0.131 4.131 18 C -0.099 4.099 19 C -0.121 4.121 20 H 0.269 0.731 21 H -0.015 1.015 22 H -0.017 1.017 23 H 0.404 0.596 24 H 0.409 0.591 25 H 0.097 0.903 26 H 0.142 0.858 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.492 -15.167 0.713 19.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.811 3.189 4 H -0.176 1.176 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.592 4.592 8 H 0.102 0.898 9 C 0.161 3.839 10 N -0.377 5.377 11 C 0.389 3.611 12 O -0.534 6.534 13 N -0.377 5.377 14 C 0.067 3.933 15 H 0.078 0.922 16 C -0.229 4.229 17 C -0.151 4.151 18 C -0.135 4.135 19 C -0.159 4.159 20 H 0.078 0.922 21 H 0.003 0.997 22 H 0.001 0.999 23 H 0.240 0.760 24 H 0.246 0.754 25 H 0.115 0.885 26 H 0.160 0.840 27 H 0.117 0.883 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.263 -15.239 0.684 18.962 hybrid contribution 0.164 1.180 0.194 1.207 sum 11.427 -14.059 0.878 18.139 Atomic orbital electron populations 1.70159 1.08352 1.28528 1.50057 1.26094 0.95788 1.03958 0.93827 0.85060 0.79027 0.77099 0.77684 1.17594 1.20393 1.20442 1.21631 0.94321 0.90407 1.52798 0.89769 1.18413 0.88159 0.83479 0.93828 1.45300 1.10844 1.03807 1.77776 1.16398 0.85237 0.81681 0.77760 1.90823 1.16899 1.84954 1.60722 1.45011 1.08758 1.04085 1.79827 1.20688 0.98339 0.79904 0.94354 0.92214 1.23617 1.00319 1.00727 0.98249 1.23715 0.94542 0.96740 1.00055 1.21481 0.97280 1.03424 0.91353 1.22741 0.96644 0.98426 0.98061 0.92230 0.99738 0.99886 0.76022 0.75416 0.88461 0.84032 0.88317 0.89174 0.88389 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.99 42.79 29.54 68.60 2.03 44.82 16 4 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.55 -30.81 9.28 25.60 0.24 -30.58 16 8 H 0.08 4.22 7.60 -2.91 -0.02 4.20 16 9 C 0.28 16.31 5.43 85.63 0.46 16.78 16 10 N -0.72 -32.54 5.55 -482.28 -2.68 -35.22 16 11 C 0.69 30.38 8.56 179.06 1.53 31.91 16 12 O -0.65 -35.54 16.02 -3.98 -0.06 -35.60 16 13 N -0.72 -22.20 5.10 -458.12 -2.34 -24.54 16 14 C 0.17 4.74 3.21 44.93 0.14 4.88 16 15 H 0.06 2.01 7.60 -2.39 -0.02 1.99 16 16 C -0.21 -5.63 10.43 25.98 0.27 -5.36 16 17 C -0.13 -2.48 10.78 25.98 0.28 -2.20 16 18 C -0.10 -1.34 6.81 30.53 0.21 -1.13 16 19 C -0.12 -2.01 6.79 31.71 0.22 -1.79 16 20 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 21 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 22 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 23 H 0.40 14.90 8.34 -92.71 -0.77 14.13 16 24 H 0.41 9.47 8.61 -92.70 -0.80 8.67 16 25 H 0.10 3.07 8.06 -2.91 -0.02 3.05 16 26 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 27 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.09 1.33 8.04 -2.39 -0.02 1.31 16 Total: -1.00 -75.43 262.89 0.62 -74.81 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -0.42 Total: 19.59 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 3.82 Total: 13.14 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -4.73 Total: -116.76 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -0.06 Total: -35.60 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -75.43 0.62 -74.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854024830.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.877 kcal (2) G-P(sol) polarization free energy of solvation -75.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds