Wall clock time and date at job start Sun Mar 29 2020 21:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00250 * 2 1 4 4 H 1.48496 * 109.47111 * 240.00770 * 3 2 1 5 5 H 1.48506 * 109.47015 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47177 * 119.99989 * 3 2 1 7 7 C 1.37873 * 119.99607 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99962 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00307 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.46917 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99739 * 179.97438 * 10 9 7 12 12 O 1.21595 * 119.99947 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00231 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00157 * 179.97438 * 13 11 10 15 15 H 1.09002 * 110.34691 * 325.70343 * 14 13 11 16 16 C 1.51108 * 110.47992 * 88.05647 * 14 13 11 17 17 C 1.30528 * 111.09990 * 135.29802 * 16 14 13 18 18 C 1.51102 * 111.10594 * 359.97438 * 17 16 14 19 19 C 1.54627 * 104.72724 * 343.56243 * 18 17 16 20 20 H 0.97005 * 119.99771 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.46789 * 59.99881 * 9 7 2 22 22 H 1.08999 * 109.46739 * 300.00041 * 9 7 2 23 23 H 0.96996 * 120.00519 * 0.02562 * 10 9 7 24 24 H 0.97004 * 120.00085 * 0.02562 * 13 11 10 25 25 H 1.07991 * 124.45026 * 315.27530 * 16 14 13 26 26 H 1.07999 * 124.44339 * 179.97438 * 17 16 14 27 27 H 1.09002 * 110.38610 * 224.74720 * 18 17 16 28 28 H 1.08999 * 110.38698 * 102.38025 * 18 17 16 29 29 H 1.08995 * 111.04004 * 266.60128 * 19 18 17 30 30 H 1.09006 * 111.07285 * 142.67787 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 1.7536 -4.8833 -0.0015 12 8 0.5581 -5.1055 0.0003 13 7 2.6294 -5.9078 -0.0031 14 6 2.1410 -7.2890 -0.0022 15 1 1.2197 -7.3649 0.5754 16 6 1.9168 -7.7714 -1.4166 17 6 2.3941 -8.9748 -1.5838 18 6 3.0167 -9.4952 -0.3092 19 6 3.2173 -8.2400 0.5713 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8897 23 1 3.1565 -3.4355 -0.0021 24 1 3.5831 -5.7306 -0.0042 25 1 1.4258 -7.1964 -2.1876 26 1 2.3498 -9.5260 -2.5115 27 1 3.9758 -9.9680 -0.5206 28 1 2.3451 -10.1997 0.1813 29 1 4.2166 -7.8253 0.4396 30 1 3.0235 -8.4623 1.6207 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854024831.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:11 Heat of formation + Delta-G solvation = -19.739413 kcal Electronic energy + Delta-G solvation = -13323.874614 eV Core-core repulsion = 10926.184107 eV Total energy + Delta-G solvation = -2397.690507 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.63454 -37.93667 -34.10492 -33.26069 -32.14549 -29.06031 -27.72281 -26.13384 -22.58467 -20.93212 -20.22470 -18.71945 -18.02667 -16.54673 -15.91608 -15.56433 -14.83939 -14.41863 -14.13985 -13.22961 -13.05838 -12.47849 -11.98612 -11.95673 -11.87316 -11.53729 -11.39473 -11.28382 -10.93497 -10.84344 -10.27199 -9.41863 -9.35106 -8.96398 -8.73723 -8.64646 -7.71888 -6.12300 -4.18850 2.22707 3.27857 3.32072 3.33687 3.53482 3.98246 4.35635 4.52753 4.66086 4.99341 5.15150 5.23598 5.31658 5.40265 5.65293 5.70525 5.75597 5.99954 6.12756 6.51003 6.76188 7.02204 7.17388 7.56034 7.59493 7.61146 7.95541 8.08817 8.80118 8.99722 9.38057 9.52505 10.97973 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.082565 B = 0.005455 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.046105 B = 5131.799959 C = 5267.409993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.730 5.730 11 C 0.692 3.308 12 O -0.601 6.601 13 N -0.749 5.749 14 C 0.183 3.817 15 H 0.098 0.902 16 C -0.157 4.157 17 C -0.178 4.178 18 C -0.097 4.097 19 C -0.130 4.130 20 H 0.266 0.734 21 H 0.024 0.976 22 H 0.024 0.976 23 H 0.386 0.614 24 H 0.391 0.609 25 H 0.124 0.876 26 H 0.123 0.877 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.529 -14.956 -0.450 17.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.382 5.382 11 C 0.391 3.609 12 O -0.481 6.481 13 N -0.406 5.406 14 C 0.077 3.923 15 H 0.116 0.884 16 C -0.176 4.176 17 C -0.197 4.197 18 C -0.134 4.134 19 C -0.168 4.168 20 H 0.076 0.924 21 H 0.042 0.958 22 H 0.042 0.958 23 H 0.218 0.782 24 H 0.224 0.776 25 H 0.142 0.858 26 H 0.141 0.859 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.209 -14.959 -0.423 16.611 hybrid contribution 1.240 1.126 -0.146 1.681 sum 8.448 -13.834 -0.569 16.219 Atomic orbital electron populations 1.69975 1.06093 1.27339 1.48939 1.24943 0.94908 0.99373 0.94789 0.86469 0.79391 0.82352 0.78634 1.20111 1.21083 1.20111 1.21198 0.93220 0.90485 1.53137 0.92025 1.18966 0.87806 0.81093 0.97571 1.45717 1.10730 1.04464 1.77297 1.16214 0.85308 0.81113 0.78238 1.90867 1.14265 1.84234 1.58698 1.45258 1.08652 1.04688 1.81963 1.20594 0.97820 0.80168 0.93734 0.88424 1.23782 0.98822 0.96712 0.98305 1.23177 1.01077 0.97091 0.98313 1.21301 1.00615 0.97506 0.93989 1.22780 0.99026 0.95166 0.99821 0.92430 0.95790 0.95771 0.78214 0.77555 0.85830 0.85935 0.91168 0.90557 0.90543 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.54 -14.98 9.28 -34.44 -0.32 -15.30 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.27 7.30 5.43 -5.19 -0.03 7.28 16 10 N -0.73 -16.06 5.55 -66.42 -0.37 -16.43 16 11 C 0.69 14.74 8.56 -86.92 -0.74 13.99 16 12 O -0.60 -15.46 16.02 5.28 0.08 -15.37 16 13 N -0.75 -11.69 5.14 -58.75 -0.30 -12.00 16 14 C 0.18 2.54 3.22 -68.01 -0.22 2.33 16 15 H 0.10 1.57 7.60 -51.93 -0.39 1.17 16 16 C -0.16 -2.12 10.41 -35.69 -0.37 -2.49 16 17 C -0.18 -1.91 10.77 -35.70 -0.38 -2.29 16 18 C -0.10 -0.86 6.81 -26.83 -0.18 -1.05 16 19 C -0.13 -1.28 6.88 -25.01 -0.17 -1.46 16 20 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 21 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.39 7.24 8.34 -40.82 -0.34 6.90 16 24 H 0.39 4.90 8.41 -40.82 -0.34 4.56 16 25 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 26 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.68 7.81 -51.93 -0.41 0.27 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 262.56 15.07 3.96 3.96 Total: -1.00 -32.86 262.56 -7.41 -40.27 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -3.98 Total: 6.58 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -2.52 Total: 2.70 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.07 Total: -54.18 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: 0.08 Total: -15.37 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.86 -7.41 -40.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854024831.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.526 kcal (2) G-P(sol) polarization free energy of solvation -32.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds