Wall clock time and date at job start Sun Mar 29 2020 21:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00250 * 2 1 4 4 H 1.48496 * 109.47111 * 240.00770 * 3 2 1 5 5 H 1.48506 * 109.47015 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47177 * 119.99989 * 3 2 1 7 7 C 1.37873 * 119.99607 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99962 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00307 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.46917 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99739 * 179.97438 * 10 9 7 12 12 O 1.21595 * 119.99947 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00231 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00157 * 179.97438 * 13 11 10 15 15 H 1.09002 * 110.34691 * 325.70343 * 14 13 11 16 16 C 1.51108 * 110.47992 * 88.05647 * 14 13 11 17 17 C 1.30528 * 111.09990 * 135.29802 * 16 14 13 18 18 C 1.51102 * 111.10594 * 359.97438 * 17 16 14 19 19 C 1.54627 * 104.72724 * 343.56243 * 18 17 16 20 20 H 0.97005 * 119.99771 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.46789 * 59.99881 * 9 7 2 22 22 H 1.08999 * 109.46739 * 300.00041 * 9 7 2 23 23 H 0.96996 * 120.00519 * 0.02562 * 10 9 7 24 24 H 0.97004 * 120.00085 * 0.02562 * 13 11 10 25 25 H 1.07991 * 124.45026 * 315.27530 * 16 14 13 26 26 H 1.07999 * 124.44339 * 179.97438 * 17 16 14 27 27 H 1.09002 * 110.38610 * 224.74720 * 18 17 16 28 28 H 1.08999 * 110.38698 * 102.38025 * 18 17 16 29 29 H 1.08995 * 111.04004 * 266.60128 * 19 18 17 30 30 H 1.09006 * 111.07285 * 142.67787 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 1.7536 -4.8833 -0.0015 12 8 0.5581 -5.1055 0.0003 13 7 2.6294 -5.9078 -0.0031 14 6 2.1410 -7.2890 -0.0022 15 1 1.2197 -7.3649 0.5754 16 6 1.9168 -7.7714 -1.4166 17 6 2.3941 -8.9748 -1.5838 18 6 3.0167 -9.4952 -0.3092 19 6 3.2173 -8.2400 0.5713 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8897 23 1 3.1565 -3.4355 -0.0021 24 1 3.5831 -5.7306 -0.0042 25 1 1.4258 -7.1964 -2.1876 26 1 2.3498 -9.5260 -2.5115 27 1 3.9758 -9.9680 -0.5206 28 1 2.3451 -10.1997 0.1813 29 1 4.2166 -7.8253 0.4396 30 1 3.0235 -8.4623 1.6207 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854024831.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:11 Heat of formation + Delta-G solvation = -44.368527 kcal Electronic energy + Delta-G solvation = -13324.942612 eV Core-core repulsion = 10926.184107 eV Total energy + Delta-G solvation = -2398.758505 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.11191 -39.21288 -36.11949 -34.82197 -34.10523 -29.96891 -29.48655 -27.56000 -24.61803 -21.97383 -21.90011 -19.92038 -19.59306 -18.09401 -17.65203 -16.74277 -16.64594 -16.16558 -15.65366 -14.95741 -14.35186 -14.14103 -14.02023 -13.27350 -12.94128 -12.83512 -12.68482 -12.57600 -12.31176 -12.22618 -12.10078 -11.49645 -11.25121 -10.78936 -10.26798 -9.92812 -9.59503 -8.27772 -6.44736 1.23854 1.43928 1.48666 1.56769 2.01736 2.24868 2.41117 3.06992 3.54603 3.65338 3.78120 4.19072 4.43236 4.50825 4.71850 4.86831 4.98162 5.07369 5.17247 5.25935 5.26979 5.48953 5.56022 5.62551 5.69198 5.85285 5.91377 6.28811 6.66896 7.24771 7.33695 7.74038 8.84580 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.082565 B = 0.005455 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.046105 B = 5131.799959 C = 5267.409993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.988 3.012 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.285 3.715 10 N -0.724 5.724 11 C 0.689 3.311 12 O -0.651 6.651 13 N -0.724 5.724 14 C 0.174 3.826 15 H 0.067 0.933 16 C -0.205 4.205 17 C -0.140 4.140 18 C -0.095 4.095 19 C -0.119 4.119 20 H 0.269 0.731 21 H -0.017 1.017 22 H -0.015 1.015 23 H 0.405 0.595 24 H 0.410 0.590 25 H 0.095 0.905 26 H 0.143 0.857 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.583 -15.865 -0.332 19.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.811 3.189 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.162 3.838 10 N -0.377 5.377 11 C 0.388 3.612 12 O -0.534 6.534 13 N -0.380 5.380 14 C 0.069 3.931 15 H 0.085 0.915 16 C -0.224 4.224 17 C -0.159 4.159 18 C -0.132 4.132 19 C -0.157 4.157 20 H 0.078 0.922 21 H 0.001 0.999 22 H 0.003 0.997 23 H 0.240 0.760 24 H 0.247 0.753 25 H 0.113 0.887 26 H 0.161 0.839 27 H 0.117 0.883 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.348 -15.929 -0.307 18.998 hybrid contribution 0.266 1.252 -0.208 1.296 sum 10.614 -14.678 -0.515 18.121 Atomic orbital electron populations 1.70149 1.08343 1.28655 1.49893 1.26091 0.95786 1.03940 0.93789 0.85161 0.77853 0.76398 0.79495 1.18662 1.21043 1.18591 1.21574 0.94313 0.90438 1.53067 0.89788 1.18402 0.88152 0.83457 0.93831 1.45303 1.10859 1.03825 1.77741 1.16418 0.85254 0.81711 0.77781 1.90829 1.16879 1.84980 1.60739 1.45075 1.08835 1.04261 1.79876 1.20852 0.98388 0.79580 0.94296 0.91544 1.23557 1.02594 0.98566 0.97708 1.23551 0.97230 0.95340 0.99776 1.21405 1.02188 0.97153 0.92458 1.22802 0.98149 0.94223 1.00535 0.92222 0.99877 0.99735 0.76008 0.75307 0.88671 0.83897 0.88280 0.89109 0.88738 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.29 13.29 21.45 0.28 -57.00 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.99 42.78 29.54 68.60 2.03 44.81 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 7 C -0.56 -30.98 9.28 25.60 0.24 -30.75 16 8 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 9 C 0.28 16.35 5.43 85.64 0.46 16.82 16 10 N -0.72 -32.60 5.55 -482.30 -2.68 -35.28 16 11 C 0.69 30.38 8.56 179.06 1.53 31.92 16 12 O -0.65 -35.55 16.02 -4.01 -0.06 -35.62 16 13 N -0.72 -22.45 5.14 -458.06 -2.36 -24.80 16 14 C 0.17 4.79 3.22 44.94 0.14 4.94 16 15 H 0.07 2.23 7.60 -2.39 -0.02 2.21 16 16 C -0.20 -5.52 10.41 26.26 0.27 -5.25 16 17 C -0.14 -2.65 10.77 26.26 0.28 -2.37 16 18 C -0.09 -1.31 6.81 30.53 0.21 -1.10 16 19 C -0.12 -1.99 6.88 31.71 0.22 -1.77 16 20 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 21 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 22 H -0.02 -0.99 8.14 -2.39 -0.02 -1.00 16 23 H 0.40 14.94 8.34 -92.71 -0.77 14.17 16 24 H 0.41 9.56 8.41 -92.71 -0.78 8.78 16 25 H 0.10 3.06 8.06 -2.92 -0.02 3.04 16 26 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 27 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.09 1.28 7.81 -2.39 -0.02 1.26 16 30 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 Total: -1.00 -75.34 262.56 0.63 -74.71 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -0.41 Total: 20.09 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: 3.82 Total: 13.09 kcal Atomic # 7 Polarization: -112.34 SS G_CDS: -4.75 Total: -117.09 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -0.06 Total: -35.62 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -75.34 0.63 -74.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854024831.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.342 kcal (2) G-P(sol) polarization free energy of solvation -75.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds