Wall clock time and date at job start Sun Mar 29 2020 21:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47253 * 2 1 4 4 N 1.29998 * 127.34040 * 270.04952 * 3 2 1 5 5 O 1.20653 * 112.33119 * 179.68713 * 4 3 2 6 6 C 1.33484 * 113.17855 * 0.46365 * 5 4 3 7 7 C 1.37477 * 106.31560 * 359.55529 * 6 5 4 8 8 C 1.47220 * 128.57359 * 180.22301 * 7 6 5 9 9 O 1.21557 * 119.99735 * 180.02562 * 8 7 6 10 10 O 1.34791 * 120.00184 * 0.02562 * 8 7 6 11 11 C 1.34889 * 117.00282 * 179.97438 * 10 8 7 12 12 H 1.08003 * 119.99893 * 0.02562 * 11 10 8 13 13 C 1.38758 * 120.00419 * 179.97438 * 11 10 8 14 14 N 1.31450 * 119.99835 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00325 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47270 * 60.00105 * 15 13 11 17 17 H 1.48498 * 109.47259 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46870 * 299.99900 * 15 13 11 19 19 H 1.09002 * 109.47301 * 60.00012 * 1 2 3 20 20 H 1.09002 * 109.47077 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47073 * 299.99548 * 1 2 3 22 22 H 1.09011 * 109.47195 * 240.00484 * 2 1 3 23 23 H 1.08992 * 109.47396 * 120.00552 * 2 1 3 24 24 H 1.08002 * 126.84550 * 179.82460 * 6 5 4 25 25 H 0.97005 * 119.99999 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2944 2.1645 -1.0335 5 8 2.6773 3.2651 -0.7211 6 6 2.7461 3.4420 0.6002 7 6 2.3299 2.2622 1.1700 8 6 2.2115 1.9240 2.5979 9 8 1.8229 0.8214 2.9312 10 8 2.5341 2.8368 3.5358 11 6 2.4025 2.4630 4.8251 12 1 2.0525 1.4702 5.0665 13 6 2.7178 3.3536 5.8414 14 7 3.1442 4.5618 5.5477 15 14 2.5363 2.8356 7.6270 16 1 3.4085 1.6637 7.8936 17 1 2.9346 3.9599 8.5115 18 1 1.1219 2.4712 7.8953 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 1.8934 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 3.0614 4.3356 1.1184 25 1 3.3650 5.1843 6.2582 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860435575.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:04 Heat of formation + Delta-G solvation = -28.321773 kcal Electronic energy + Delta-G solvation = -13587.180816 eV Core-core repulsion = 10955.566394 eV Total energy + Delta-G solvation = -2631.614422 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.068 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.49841 -38.90528 -35.56550 -34.57791 -32.36591 -31.70191 -30.91353 -26.02603 -24.36147 -23.63365 -20.47211 -20.34498 -17.80934 -17.52480 -17.29817 -16.21629 -15.04357 -14.49363 -14.48009 -14.20230 -13.88721 -13.14205 -12.47689 -12.32480 -11.76148 -11.39373 -11.36308 -11.31986 -10.67327 -10.56235 -10.52308 -9.96389 -9.61559 -9.24972 -9.24147 -8.68293 -6.54265 -4.18442 1.55495 2.12960 3.12144 3.12757 3.16622 3.37233 3.87520 3.91788 4.28933 4.53180 4.78621 5.05525 5.37286 5.49798 5.51443 5.56440 5.92738 6.04885 6.12885 6.37943 6.43510 6.74309 7.28206 7.82087 8.52671 8.58955 8.94454 9.70870 10.63313 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.046651 B = 0.008480 C = 0.007340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.056391 B = 3301.180974 C = 3813.557623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.044 4.044 3 C 0.064 3.936 4 N -0.369 5.369 5 O 0.084 5.916 6 C -0.004 4.004 7 C -0.208 4.208 8 C 0.469 3.531 9 O -0.544 6.544 10 O -0.205 6.205 11 C -0.376 4.376 12 H 0.099 0.901 13 C 0.042 3.958 14 N -0.860 5.860 15 Si 0.948 3.052 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.268 1.268 19 H 0.051 0.949 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.076 0.924 23 H 0.100 0.900 24 H 0.233 0.767 25 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.518 -2.513 -7.034 7.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 C -0.098 4.098 4 N -0.077 5.077 5 O 0.026 5.974 6 C -0.085 4.085 7 C -0.213 4.213 8 C 0.316 3.684 9 O -0.442 6.442 10 O -0.112 6.112 11 C -0.452 4.452 12 H 0.117 0.883 13 C -0.162 4.162 14 N -0.496 5.496 15 Si 0.772 3.228 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.193 1.193 19 H 0.070 0.930 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.095 0.905 23 H 0.119 0.881 24 H 0.249 0.751 25 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.586 -2.719 -8.133 8.721 hybrid contribution -0.014 -0.097 1.765 1.767 sum -1.600 -2.817 -6.368 7.144 Atomic orbital electron populations 1.21653 0.93934 1.02087 1.02221 1.19990 0.96570 0.87639 1.04043 1.24779 0.99654 0.98790 0.86577 1.73574 1.17545 0.92849 1.23746 1.84484 1.62913 1.26325 1.23684 1.26621 0.98294 1.00845 0.82755 1.21649 1.11024 0.94923 0.93747 1.19249 0.80518 0.84140 0.84512 1.90636 1.47970 1.23414 1.82146 1.83898 1.70792 1.40167 1.16366 1.21263 1.45551 1.01106 0.77262 0.88347 1.25382 0.95853 0.94817 1.00189 1.69971 1.40401 1.05143 1.34124 0.85676 0.79340 0.78276 0.79535 1.19339 1.20272 1.19334 0.93012 0.91798 0.91817 0.90505 0.88117 0.75086 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.89 37.16 0.37 -1.65 15 2 C -0.04 -0.70 6.20 -27.88 -0.17 -0.87 15 3 C 0.06 1.18 6.84 -79.75 -0.55 0.64 15 4 N -0.37 -6.49 12.01 34.79 0.42 -6.07 15 5 O 0.08 1.39 11.06 18.68 0.21 1.59 15 6 C 0.00 -0.07 12.24 30.46 0.37 0.30 15 7 C -0.21 -4.25 6.47 -102.91 -0.67 -4.91 15 8 C 0.47 11.69 7.89 34.38 0.27 11.96 15 9 O -0.54 -14.34 14.94 -19.31 -0.29 -14.63 15 10 O -0.21 -5.71 9.65 -21.90 -0.21 -5.92 15 11 C -0.38 -10.77 9.65 30.92 0.30 -10.47 15 12 H 0.10 2.82 6.86 -52.48 -0.36 2.46 15 13 C 0.04 1.15 5.49 -17.52 -0.10 1.06 15 14 N -0.86 -24.13 13.67 55.48 0.76 -23.38 15 15 Si 0.95 20.56 29.55 -169.99 -5.02 15.54 15 16 H -0.27 -5.71 7.11 56.52 0.40 -5.30 15 17 H -0.28 -5.78 7.11 56.52 0.40 -5.38 15 18 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 19 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 20 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 21 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 22 H 0.08 1.04 8.14 -51.92 -0.42 0.61 15 23 H 0.10 1.73 7.11 -51.93 -0.37 1.36 15 24 H 0.23 3.29 8.06 -52.49 -0.42 2.87 15 25 H 0.27 7.01 8.31 -40.82 -0.34 6.67 15 LS Contribution 239.78 15.07 3.61 3.61 Total: -1.00 -31.31 239.78 -2.67 -33.98 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: -1.98 Total: -0.78 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -0.17 Total: -3.96 kcal Atomic # 7 Polarization: -30.62 SS G_CDS: 1.18 Total: -29.45 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.29 Total: -18.95 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -31.31 -2.67 -33.98 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860435575.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.660 kcal (2) G-P(sol) polarization free energy of solvation -31.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds