Wall clock time and date at job start Sun Mar 29 2020 22:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00127 * 2 1 4 4 H 1.48497 * 109.47225 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47016 * 300.00250 * 3 2 1 6 6 H 1.48497 * 109.46884 * 59.99731 * 3 2 1 7 7 C 1.37879 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00063 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99967 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46727 * 180.02562 * 9 7 2 11 11 N 1.46507 * 109.46877 * 179.97438 * 10 9 7 12 12 C 1.39191 * 119.99635 * 179.97438 * 11 10 9 13 13 C 1.39501 * 120.13090 * 0.02562 * 12 11 10 14 14 C 1.38495 * 117.92310 * 179.97438 * 13 12 11 15 15 C 1.39083 * 118.00851 * 359.97438 * 14 13 12 16 16 F 1.35103 * 120.02500 * 179.97438 * 15 14 13 17 17 N 1.31943 * 119.95960 * 0.02562 * 15 14 13 18 18 N 1.28351 * 122.24518 * 359.97438 * 17 15 14 19 19 H 0.96993 * 119.99725 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47311 * 60.00237 * 9 7 2 21 21 H 1.09002 * 109.46875 * 299.99922 * 9 7 2 22 22 H 1.09002 * 109.47734 * 60.00055 * 10 9 7 23 23 H 1.09002 * 109.47180 * 299.99491 * 10 9 7 24 24 H 0.97001 * 119.99964 * 0.02562 * 11 10 9 25 25 H 1.08001 * 121.03936 * 359.95317 * 13 12 11 26 26 H 1.08001 * 121.00030 * 179.73069 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 7 1.5128 -4.9308 -0.0020 12 6 2.2089 -6.1362 -0.0024 13 6 3.6039 -6.1393 -0.0018 14 6 4.2497 -7.3644 -0.0017 15 6 3.4681 -8.5148 -0.0017 16 9 4.0557 -9.7314 -0.0021 17 7 2.1522 -8.4174 -0.0022 18 7 1.5495 -7.2842 -0.0023 19 1 -0.4849 0.8400 -0.0004 20 1 0.6248 -2.5564 -0.8920 21 1 0.6241 -2.5575 0.8880 22 1 2.8714 -3.6048 0.8890 23 1 2.8727 -3.6039 -0.8910 24 1 0.5428 -4.9308 -0.0028 25 1 4.1628 -5.2152 -0.0017 26 1 5.3280 -7.4248 -0.0056 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865671115.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:54 Heat of formation + Delta-G solvation = 9.461270 kcal Electronic energy + Delta-G solvation = -12875.558818 eV Core-core repulsion = 10290.248332 eV Total energy + Delta-G solvation = -2585.310486 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.082 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.91343 -40.78156 -36.50726 -33.40711 -32.98440 -31.23477 -28.76194 -25.23494 -24.66202 -22.99851 -21.11780 -18.37685 -17.79036 -17.39487 -16.25240 -16.23814 -14.74575 -14.69145 -14.57170 -13.96723 -13.87152 -13.61035 -13.35990 -12.42849 -11.69360 -11.40017 -11.38591 -10.92410 -10.73061 -10.29679 -10.05354 -9.80704 -9.55564 -9.41555 -8.56983 -7.76873 -6.21401 -4.26253 0.74630 1.10721 3.14500 3.19674 3.28400 3.31271 3.57457 3.67039 4.30004 4.41126 4.61467 4.81243 5.06438 5.15879 5.56888 5.72231 5.90898 5.96520 6.21124 6.42610 7.04444 7.41510 7.43558 7.71865 7.77530 8.11932 8.76555 8.79632 9.39595 10.90033 Molecular weight = 211.08amu Principal moments of inertia in cm(-1) A = 0.086523 B = 0.005208 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.537073 B = 5374.612238 C = 5677.703280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.121 3.879 11 N -0.696 5.696 12 C 0.341 3.659 13 C -0.152 4.152 14 C -0.101 4.101 15 C 0.175 3.825 16 F -0.113 7.113 17 N -0.223 5.223 18 N -0.288 5.288 19 H 0.263 0.737 20 H 0.026 0.974 21 H 0.026 0.974 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.411 0.589 25 H 0.159 0.841 26 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.878 -10.082 -0.008 12.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.326 5.326 12 C 0.097 3.903 13 C -0.186 4.186 14 C -0.130 4.130 15 C 0.008 3.992 16 F -0.093 7.093 17 N -0.069 5.069 18 N -0.141 5.141 19 H 0.073 0.927 20 H 0.044 0.956 21 H 0.044 0.956 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.247 0.753 25 H 0.176 0.824 26 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.412 -10.532 -0.008 12.331 hybrid contribution 1.560 1.448 -0.002 2.128 sum 7.972 -9.084 -0.009 12.086 Atomic orbital electron populations 1.69961 1.06134 1.27022 1.49684 1.25008 0.94902 0.99525 0.94794 0.86442 0.80003 0.83260 0.77756 1.19603 1.20856 1.20851 1.21006 0.93138 0.90200 1.52216 0.92161 1.19310 0.94175 0.90579 0.98422 1.21991 0.96748 0.81229 1.00214 1.45167 1.09816 1.01740 1.75913 1.20302 0.90126 0.89179 0.90723 1.21896 0.93381 0.99555 1.03727 1.22010 1.02277 0.90912 0.97802 1.19558 0.90606 0.81422 1.07574 1.91584 1.82310 1.41176 1.94251 1.72601 1.07281 1.18393 1.08674 1.73037 1.28577 0.92490 1.20018 0.92689 0.95566 0.95566 0.92365 0.92367 0.75266 0.82390 0.82525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.13 13.29 55.43 0.74 -24.39 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 3 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 15 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 7 C -0.53 -13.53 9.11 -34.44 -0.31 -13.84 15 8 H 0.06 1.48 7.74 -52.48 -0.41 1.07 15 9 C 0.01 0.29 5.09 -27.88 -0.14 0.15 15 10 C 0.12 2.13 4.86 -4.04 -0.02 2.11 15 11 N -0.70 -11.34 5.74 -60.26 -0.35 -11.69 15 12 C 0.34 5.35 7.75 -154.71 -1.20 4.15 15 13 C -0.15 -1.96 9.42 -39.02 -0.37 -2.32 15 14 C -0.10 -1.16 10.19 -39.17 -0.40 -1.56 15 15 C 0.17 2.48 8.52 -17.19 -0.15 2.33 15 16 F -0.11 -1.53 17.30 2.25 0.04 -1.49 15 17 N -0.22 -3.73 11.50 30.28 0.35 -3.38 15 18 N -0.29 -4.94 11.53 31.25 0.36 -4.57 15 19 H 0.26 7.03 8.31 -40.82 -0.34 6.69 15 20 H 0.03 0.64 8.14 -51.93 -0.42 0.22 15 21 H 0.03 0.64 8.14 -51.93 -0.42 0.22 15 22 H 0.06 0.98 7.97 -51.93 -0.41 0.57 15 23 H 0.06 0.98 7.96 -51.93 -0.41 0.57 15 24 H 0.41 6.65 8.60 -40.82 -0.35 6.30 15 25 H 0.16 1.74 6.84 -52.49 -0.36 1.38 15 26 H 0.16 1.23 8.06 -52.49 -0.42 0.80 15 LS Contribution 242.36 15.07 3.65 3.65 Total: -1.00 -28.49 242.36 -5.26 -33.75 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -2.35 Total: 0.33 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -2.68 Total: -7.47 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 1.10 Total: -44.04 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -28.49 -5.26 -33.75 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865671115.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.214 kcal (2) G-P(sol) polarization free energy of solvation -28.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds