Wall clock time and date at job start Sun Mar 29 2020 21:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86806 * 119.99968 * 2 1 4 4 H 1.48498 * 109.46927 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46999 * 300.00099 * 3 2 1 6 6 H 1.48501 * 109.46732 * 60.00505 * 3 2 1 7 7 C 1.38759 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00224 * 180.02562 * 7 2 1 9 9 O 1.34917 * 119.99630 * 359.97438 * 7 2 1 10 10 C 1.34316 * 116.99680 * 180.02562 * 9 7 2 11 11 O 1.21203 * 120.00410 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99907 * 180.02562 * 10 9 7 13 13 C 1.52302 * 115.91285 * 248.28958 * 12 10 9 14 14 C 1.52065 * 115.93007 * 180.02562 * 12 10 9 15 15 H 1.09002 * 117.25450 * 359.36391 * 14 12 10 16 16 C 1.52709 * 119.79724 * 211.06675 * 14 12 10 17 17 C 1.50933 * 111.20927 * 21.30472 * 16 14 12 18 18 C 1.53294 * 108.42434 * 305.55662 * 17 16 14 19 19 C 1.52070 * 114.26593 * 33.95909 * 12 10 9 20 20 H 0.97000 * 119.99835 * 359.97438 * 1 2 3 21 21 H 1.09007 * 117.54038 * 146.09589 * 13 12 10 22 22 H 1.08994 * 117.53860 * 0.85145 * 13 12 10 23 23 H 1.08999 * 109.36150 * 141.89654 * 16 14 12 24 24 H 1.08998 * 109.35901 * 261.48184 * 16 14 12 25 25 H 1.09005 * 109.89722 * 185.75616 * 17 16 14 26 26 H 1.09009 * 109.50291 * 65.11987 * 17 16 14 27 27 H 1.09010 * 109.61239 * 314.47423 * 18 17 16 28 28 H 1.08998 * 109.62173 * 193.93851 * 18 17 16 29 29 H 1.08999 * 109.27459 * 286.50100 * 19 12 10 30 30 H 1.09009 * 109.26915 * 46.00432 * 19 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7084 1.3464 -0.0006 5 1 1.8896 2.3965 -1.2125 6 1 1.8897 2.3964 1.2126 7 6 2.0083 -1.2017 -0.0005 8 1 3.0883 -1.2017 -0.0001 9 8 1.3336 -2.3701 -0.0005 10 6 2.0652 -3.4965 -0.0005 11 8 3.2756 -3.4331 -0.0001 12 6 1.3811 -4.8393 -0.0011 13 6 1.5300 -5.6627 1.2715 14 6 2.2977 -6.0526 -0.0005 15 1 3.3717 -5.8668 -0.0104 16 6 1.8500 -7.3423 -0.6847 17 6 0.7700 -7.0731 -1.7041 18 6 -0.3709 -6.3175 -1.0132 19 6 0.0731 -4.8739 -0.7760 20 1 -0.4850 0.8401 0.0004 21 1 0.6898 -6.2918 1.5659 22 1 2.1010 -5.2256 2.0905 23 1 2.7037 -7.8028 -1.1819 24 1 1.4560 -8.0302 0.0634 25 1 0.3953 -8.0149 -2.1051 26 1 1.1758 -6.4640 -2.5120 27 1 -0.5982 -6.7917 -0.0583 28 1 -1.2555 -6.3285 -1.6499 29 1 -0.6955 -4.3495 -0.2083 30 1 0.2111 -4.3785 -1.7371 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869706231.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:10 Heat of formation + Delta-G solvation = -74.144324 kcal Electronic energy + Delta-G solvation = -14055.381266 eV Core-core repulsion = 11623.038834 eV Total energy + Delta-G solvation = -2432.342432 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.04190 -38.05109 -35.08172 -32.78492 -32.11786 -30.64907 -25.81897 -24.44172 -23.25125 -21.07244 -20.25053 -18.00542 -17.62217 -16.83905 -15.22280 -14.58415 -14.33070 -14.22151 -13.75282 -13.60505 -13.16616 -12.96704 -12.09824 -11.78878 -11.60873 -11.38905 -11.18740 -10.77214 -10.62331 -10.39666 -10.38065 -10.25769 -9.78478 -9.61256 -9.25157 -8.87806 -8.54432 -6.37713 -4.04976 3.09609 3.20700 3.28367 3.40718 3.93386 4.21173 4.50703 4.94480 4.96166 5.08626 5.17488 5.31957 5.38540 5.51153 5.71548 5.82235 5.84114 5.94619 6.05016 6.18343 6.23875 6.37038 6.40202 6.55363 6.64047 6.69980 6.95355 7.43693 7.99345 8.76090 9.11382 9.92919 10.80476 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.056256 B = 0.008252 C = 0.007673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.603101 B = 3392.405640 C = 3648.430164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.042 3.958 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.382 4.382 8 H 0.095 0.905 9 O -0.207 6.207 10 C 0.428 3.572 11 O -0.558 6.558 12 C -0.099 4.099 13 C -0.158 4.158 14 C -0.123 4.123 15 H 0.115 0.885 16 C -0.085 4.085 17 C -0.122 4.122 18 C -0.120 4.120 19 C -0.077 4.077 20 H 0.268 0.732 21 H 0.101 0.899 22 H 0.095 0.905 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.005 -11.300 -0.990 11.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.459 4.459 8 H 0.112 0.888 9 O -0.114 6.114 10 C 0.274 3.726 11 O -0.455 6.455 12 C -0.100 4.100 13 C -0.195 4.195 14 C -0.141 4.141 15 H 0.133 0.867 16 C -0.123 4.123 17 C -0.159 4.159 18 C -0.157 4.157 19 C -0.114 4.114 20 H 0.078 0.922 21 H 0.119 0.881 22 H 0.114 0.886 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.882 -11.099 -0.988 11.178 hybrid contribution 0.441 0.966 0.061 1.064 sum -0.440 -10.133 -0.927 10.185 Atomic orbital electron populations 1.70005 1.05950 1.27458 1.46751 1.25319 0.95806 0.98779 0.96292 0.85637 0.79481 0.80176 0.78101 1.18993 1.20174 1.20178 1.21289 0.92381 0.79988 1.52206 0.88783 1.83873 1.39119 1.13099 1.75311 1.22222 0.85952 0.86263 0.78134 1.90527 1.15686 1.87869 1.51433 1.20401 0.98207 0.88593 1.02776 1.23164 1.02727 1.02441 0.91201 1.22288 0.98486 0.93632 0.99743 0.86743 1.20692 0.98507 0.95086 0.97982 1.21260 0.96202 1.00047 0.98416 1.21648 0.97812 0.95812 1.00471 1.20746 0.94131 0.96270 1.00246 0.92200 0.88108 0.88633 0.91700 0.91778 0.92031 0.91594 0.91946 0.91682 0.90338 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.69 13.67 55.48 0.76 -24.94 16 2 C 0.04 1.20 5.49 -17.53 -0.10 1.11 16 3 Si 0.94 21.71 29.55 -169.99 -5.02 16.69 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.38 -11.64 9.65 30.92 0.30 -11.34 16 8 H 0.09 2.90 6.86 -52.49 -0.36 2.54 16 9 O -0.21 -6.13 9.38 -20.71 -0.19 -6.33 16 10 C 0.43 11.15 7.32 36.01 0.26 11.41 16 11 O -0.56 -15.71 15.30 -19.05 -0.29 -16.00 16 12 C -0.10 -1.95 2.50 -156.96 -0.39 -2.34 16 13 C -0.16 -2.63 9.29 -26.78 -0.25 -2.88 16 14 C -0.12 -2.05 5.71 -90.93 -0.52 -2.57 16 15 H 0.11 2.08 7.50 -51.93 -0.39 1.69 16 16 C -0.09 -1.08 5.66 -27.92 -0.16 -1.24 16 17 C -0.12 -1.51 5.88 -27.62 -0.16 -1.67 16 18 C -0.12 -1.59 5.70 -26.64 -0.15 -1.74 16 19 C -0.08 -1.35 5.18 -27.26 -0.14 -1.49 16 20 H 0.27 7.27 8.31 -40.82 -0.34 6.94 16 21 H 0.10 1.39 7.26 -51.92 -0.38 1.02 16 22 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.71 8.06 -51.93 -0.42 0.29 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.89 8.04 -51.92 -0.42 0.47 16 27 H 0.06 0.76 7.10 -51.92 -0.37 0.39 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 30 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 LS Contribution 253.57 15.07 3.82 3.82 Total: -1.00 -33.00 253.57 -6.24 -39.24 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -4.00 Total: 0.27 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -1.31 Total: -12.76 kcal Atomic # 7 Polarization: -25.69 SS G_CDS: 0.76 Total: -24.94 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.49 Total: -22.33 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -33.00 -6.24 -39.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869706231.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.902 kcal (2) G-P(sol) polarization free energy of solvation -33.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds