Wall clock time and date at job start Sun Mar 29 2020 21:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86806 * 119.99968 * 2 1 4 4 H 1.48498 * 109.46927 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46999 * 300.00099 * 3 2 1 6 6 H 1.48501 * 109.46732 * 60.00505 * 3 2 1 7 7 C 1.38759 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00224 * 180.02562 * 7 2 1 9 9 O 1.34917 * 119.99630 * 359.97438 * 7 2 1 10 10 C 1.34316 * 116.99680 * 180.02562 * 9 7 2 11 11 O 1.21203 * 120.00410 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99907 * 180.02562 * 10 9 7 13 13 C 1.52302 * 115.91285 * 248.28958 * 12 10 9 14 14 C 1.52065 * 115.93007 * 180.02562 * 12 10 9 15 15 H 1.09002 * 117.25450 * 359.36391 * 14 12 10 16 16 C 1.52709 * 119.79724 * 211.06675 * 14 12 10 17 17 C 1.50933 * 111.20927 * 21.30472 * 16 14 12 18 18 C 1.53294 * 108.42434 * 305.55662 * 17 16 14 19 19 C 1.52070 * 114.26593 * 33.95909 * 12 10 9 20 20 H 0.97000 * 119.99835 * 359.97438 * 1 2 3 21 21 H 1.09007 * 117.54038 * 146.09589 * 13 12 10 22 22 H 1.08994 * 117.53860 * 0.85145 * 13 12 10 23 23 H 1.08999 * 109.36150 * 141.89654 * 16 14 12 24 24 H 1.08998 * 109.35901 * 261.48184 * 16 14 12 25 25 H 1.09005 * 109.89722 * 185.75616 * 17 16 14 26 26 H 1.09009 * 109.50291 * 65.11987 * 17 16 14 27 27 H 1.09010 * 109.61239 * 314.47423 * 18 17 16 28 28 H 1.08998 * 109.62173 * 193.93851 * 18 17 16 29 29 H 1.08999 * 109.27459 * 286.50100 * 19 12 10 30 30 H 1.09009 * 109.26915 * 46.00432 * 19 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7084 1.3464 -0.0006 5 1 1.8896 2.3965 -1.2125 6 1 1.8897 2.3964 1.2126 7 6 2.0083 -1.2017 -0.0005 8 1 3.0883 -1.2017 -0.0001 9 8 1.3336 -2.3701 -0.0005 10 6 2.0652 -3.4965 -0.0005 11 8 3.2756 -3.4331 -0.0001 12 6 1.3811 -4.8393 -0.0011 13 6 1.5300 -5.6627 1.2715 14 6 2.2977 -6.0526 -0.0005 15 1 3.3717 -5.8668 -0.0104 16 6 1.8500 -7.3423 -0.6847 17 6 0.7700 -7.0731 -1.7041 18 6 -0.3709 -6.3175 -1.0132 19 6 0.0731 -4.8739 -0.7760 20 1 -0.4850 0.8401 0.0004 21 1 0.6898 -6.2918 1.5659 22 1 2.1010 -5.2256 2.0905 23 1 2.7037 -7.8028 -1.1819 24 1 1.4560 -8.0302 0.0634 25 1 0.3953 -8.0149 -2.1051 26 1 1.1758 -6.4640 -2.5120 27 1 -0.5982 -6.7917 -0.0583 28 1 -1.2555 -6.3285 -1.6499 29 1 -0.6955 -4.3495 -0.2083 30 1 0.2111 -4.3785 -1.7371 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869706231.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:10 Heat of formation + Delta-G solvation = -94.547605 kcal Electronic energy + Delta-G solvation = -14056.266019 eV Core-core repulsion = 11623.038834 eV Total energy + Delta-G solvation = -2433.227185 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.72750 -39.85650 -37.21027 -34.35784 -34.04755 -31.90839 -27.91592 -25.83986 -24.83294 -22.38638 -21.85352 -19.91960 -19.45711 -18.55130 -17.22518 -16.59473 -16.26003 -15.55892 -15.06849 -14.86774 -14.80430 -14.30495 -13.81981 -13.43787 -13.27216 -12.91764 -12.84558 -12.43892 -12.22034 -12.03736 -11.91964 -11.73093 -11.43038 -11.00666 -10.77862 -10.74197 -10.64638 -8.58447 -6.39022 1.21956 1.30149 1.49048 1.53268 2.07052 2.59667 2.75969 2.96436 3.56770 3.72707 3.87179 4.07465 4.15974 4.35937 4.46059 4.58686 4.66910 4.71919 4.81323 5.00272 5.05203 5.11570 5.14996 5.26777 5.32412 5.35993 5.42974 5.53562 5.78588 6.59488 6.85985 7.73528 8.62477 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.056256 B = 0.008252 C = 0.007673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.603101 B = 3392.405640 C = 3648.430164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.003 4.003 3 Si 1.019 2.981 4 H -0.267 1.267 5 H -0.257 1.257 6 H -0.256 1.256 7 C -0.428 4.428 8 H 0.077 0.923 9 O -0.235 6.235 10 C 0.419 3.581 11 O -0.589 6.589 12 C -0.130 4.130 13 C -0.140 4.140 14 C -0.108 4.108 15 H 0.091 0.909 16 C -0.081 4.081 17 C -0.120 4.120 18 C -0.110 4.110 19 C -0.072 4.072 20 H 0.280 0.720 21 H 0.142 0.858 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.095 0.905 25 H 0.098 0.902 26 H 0.046 0.954 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.613 -12.786 -0.915 12.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.203 4.203 3 Si 0.837 3.163 4 H -0.191 1.191 5 H -0.181 1.181 6 H -0.181 1.181 7 C -0.503 4.503 8 H 0.095 0.905 9 O -0.143 6.143 10 C 0.268 3.732 11 O -0.488 6.488 12 C -0.131 4.131 13 C -0.177 4.177 14 C -0.126 4.126 15 H 0.110 0.890 16 C -0.118 4.118 17 C -0.158 4.158 18 C -0.148 4.148 19 C -0.109 4.109 20 H 0.089 0.911 21 H 0.159 0.841 22 H 0.099 0.901 23 H 0.098 0.902 24 H 0.114 0.886 25 H 0.116 0.884 26 H 0.065 0.935 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.507 -12.611 -0.914 12.734 hybrid contribution 0.656 1.388 0.048 1.536 sum -0.851 -11.223 -0.865 11.289 Atomic orbital electron populations 1.70083 1.07603 1.29390 1.46553 1.26568 0.96947 1.02285 0.94500 0.84569 0.77631 0.74593 0.79501 1.19107 1.18115 1.18069 1.21482 0.92070 0.81434 1.55354 0.90526 1.83899 1.40052 1.13963 1.76384 1.23636 0.86060 0.87678 0.75842 1.90476 1.17233 1.88580 1.52522 1.20595 0.99925 0.85918 1.06683 1.23357 1.03554 1.00897 0.89876 1.22448 0.96854 0.93647 0.99671 0.89032 1.20782 0.99432 0.92869 0.98713 1.21289 0.95593 1.01209 0.97672 1.21646 0.98726 0.92230 1.02156 1.20710 0.92553 0.99566 0.98112 0.91072 0.84060 0.90055 0.90168 0.88644 0.88398 0.93535 0.89778 0.89933 0.92220 0.93722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.53 13.67 21.63 0.30 -54.23 16 2 C 0.00 -0.15 5.49 84.88 0.47 0.32 16 3 Si 1.02 44.85 29.55 68.60 2.03 46.88 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 6 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 7 C -0.43 -27.38 9.65 67.94 0.66 -26.72 16 8 H 0.08 5.01 6.86 -2.91 -0.02 4.99 16 9 O -0.24 -14.77 9.38 14.85 0.14 -14.63 16 10 C 0.42 23.07 7.32 71.24 0.52 23.59 16 11 O -0.59 -35.11 15.30 20.80 0.32 -34.80 16 12 C -0.13 -5.22 2.50 -53.77 -0.13 -5.35 16 13 C -0.14 -4.45 9.29 30.56 0.28 -4.17 16 14 C -0.11 -3.46 5.71 -11.00 -0.06 -3.52 16 15 H 0.09 3.36 7.50 -2.39 -0.02 3.34 16 16 C -0.08 -1.74 5.66 29.82 0.17 -1.57 16 17 C -0.12 -2.54 5.88 30.02 0.18 -2.37 16 18 C -0.11 -2.59 5.70 30.65 0.17 -2.41 16 19 C -0.07 -2.56 5.18 30.25 0.16 -2.40 16 20 H 0.28 15.25 8.31 -92.71 -0.77 14.47 16 21 H 0.14 3.34 7.26 -2.38 -0.02 3.32 16 22 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 23 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.10 1.56 8.06 -2.39 -0.02 1.54 16 25 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 26 H 0.05 1.17 8.04 -2.38 -0.02 1.15 16 27 H 0.08 1.65 7.10 -2.38 -0.02 1.63 16 28 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -76.31 253.57 6.31 -70.00 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 1.12 Total: 11.38 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: 2.41 Total: -24.61 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.30 Total: -54.23 kcal Atomic # 8 Polarization: -49.88 SS G_CDS: 0.46 Total: -49.42 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -76.31 6.31 -70.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869706231.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.544 kcal (2) G-P(sol) polarization free energy of solvation -76.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds