Wall clock time and date at job start Sun Mar 29 2020 21:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86801 * 120.00076 * 2 1 4 4 H 1.48493 * 109.47079 * 239.99791 * 3 2 1 5 5 H 1.48500 * 109.46664 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47336 * 119.99494 * 3 2 1 7 7 C 1.38755 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00068 * 180.02562 * 7 2 1 9 9 O 1.34922 * 120.00272 * 0.02562 * 7 2 1 10 10 C 1.34310 * 117.00349 * 179.97438 * 9 7 2 11 11 O 1.21213 * 119.99644 * 0.02562 * 10 9 7 12 12 C 1.50693 * 119.99805 * 180.27868 * 10 9 7 13 13 C 1.52300 * 115.91568 * 111.55618 * 12 10 9 14 14 C 1.51360 * 60.10367 * 106.18669 * 13 12 10 15 15 H 1.08998 * 115.85225 * 251.98704 * 14 13 12 16 16 C 1.52543 * 117.52964 * 111.34545 * 14 13 12 17 17 C 1.52870 * 110.48456 * 270.70908 * 16 14 13 18 18 C 1.53306 * 108.58154 * 53.45967 * 17 16 14 19 19 C 1.52075 * 114.63945 * 325.30420 * 12 10 9 20 20 H 0.96993 * 120.00374 * 0.02562 * 1 2 3 21 21 H 1.09007 * 117.54078 * 213.89801 * 13 12 10 22 22 H 1.09004 * 117.54192 * 359.14549 * 13 12 10 23 23 H 1.09004 * 110.04352 * 149.85068 * 16 14 13 24 24 H 1.08998 * 108.32990 * 30.47974 * 16 14 13 25 25 H 1.09000 * 109.62142 * 293.73597 * 17 16 14 26 26 H 1.08995 * 109.62207 * 173.18442 * 17 16 14 27 27 H 1.08994 * 109.62140 * 165.82517 * 18 17 16 28 28 H 1.09009 * 109.61258 * 45.28643 * 18 17 16 29 29 H 1.08998 * 109.26954 * 314.64222 * 19 12 10 30 30 H 1.09003 * 109.26124 * 74.10784 * 19 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.1022 1.6964 -1.2124 5 1 1.2834 2.7464 -0.0006 6 1 3.1021 1.6965 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0010 9 8 1.3337 -2.3701 0.0005 10 6 2.0652 -3.4966 0.0005 11 8 3.2756 -3.4330 0.0010 12 6 1.3810 -4.8392 -0.0058 13 6 1.5324 -5.6574 -1.2814 14 6 2.2975 -6.0523 -0.0365 15 1 3.3712 -5.8663 -0.0595 16 6 1.8937 -7.3494 0.6574 17 6 0.8020 -7.0840 1.6941 18 6 -0.3503 -6.3390 1.0103 19 6 0.0774 -4.8902 0.7756 20 1 -0.4850 0.8400 -0.0004 21 1 0.6930 -6.2853 -1.5801 22 1 2.1051 -5.2170 -2.0977 23 1 2.7584 -7.7948 1.1494 24 1 1.5153 -8.0386 -0.0974 25 1 1.2048 -6.4727 2.5016 26 1 0.4392 -8.0308 2.0941 27 1 -1.2318 -6.3611 1.6510 28 1 -0.5768 -6.8130 0.0552 29 1 0.2147 -4.3955 1.7370 30 1 -0.6996 -4.3725 0.2130 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869706236.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:12 Heat of formation + Delta-G solvation = -74.461468 kcal Electronic energy + Delta-G solvation = -14050.923657 eV Core-core repulsion = 11618.567472 eV Total energy + Delta-G solvation = -2432.356184 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.07016 -38.04258 -35.06502 -32.79736 -32.11662 -30.62239 -25.82260 -24.47486 -23.27179 -21.00661 -20.25132 -18.01446 -17.62038 -16.85273 -15.21584 -14.58489 -14.34864 -14.20241 -13.74540 -13.60663 -13.14748 -12.97067 -12.08666 -11.79717 -11.60204 -11.39055 -11.16013 -10.77326 -10.64035 -10.45371 -10.36234 -10.22281 -9.80068 -9.68013 -9.23183 -8.88019 -8.53536 -6.37174 -4.04648 3.12780 3.20373 3.24545 3.41744 3.93492 4.24083 4.50910 4.93886 4.97625 5.07827 5.18289 5.33892 5.37917 5.52137 5.70485 5.81684 5.83315 5.93498 6.04160 6.18711 6.23735 6.36091 6.40063 6.54767 6.63411 6.69654 6.95584 7.43245 7.99649 8.76258 9.11617 9.93265 10.80902 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.056291 B = 0.008239 C = 0.007665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.299002 B = 3397.685825 C = 3652.231829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.043 3.957 3 Si 0.943 3.057 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.383 4.383 8 H 0.093 0.907 9 O -0.207 6.207 10 C 0.428 3.572 11 O -0.558 6.558 12 C -0.100 4.100 13 C -0.157 4.157 14 C -0.124 4.124 15 H 0.111 0.889 16 C -0.085 4.085 17 C -0.121 4.121 18 C -0.120 4.120 19 C -0.075 4.075 20 H 0.269 0.731 21 H 0.100 0.900 22 H 0.095 0.905 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.014 -11.298 0.961 11.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.161 4.161 3 Si 0.767 3.233 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.460 4.460 8 H 0.111 0.889 9 O -0.113 6.113 10 C 0.275 3.725 11 O -0.455 6.455 12 C -0.101 4.101 13 C -0.194 4.194 14 C -0.142 4.142 15 H 0.129 0.871 16 C -0.123 4.123 17 C -0.158 4.158 18 C -0.157 4.157 19 C -0.113 4.113 20 H 0.079 0.921 21 H 0.118 0.882 22 H 0.113 0.887 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.899 -11.093 0.955 11.170 hybrid contribution 0.479 0.951 -0.074 1.068 sum -0.420 -10.142 0.881 10.189 Atomic orbital electron populations 1.69983 1.05946 1.27684 1.46585 1.25311 0.95801 0.98767 0.96260 0.85759 0.78642 0.79540 0.79313 1.19532 1.20361 1.19515 1.21186 0.92327 0.80016 1.52443 0.88896 1.83871 1.39094 1.13077 1.75297 1.22193 0.85942 0.86231 0.78152 1.90529 1.15676 1.87862 1.51480 1.20354 0.98324 0.88564 1.02874 1.22811 1.02758 1.02331 0.91460 1.21853 0.98613 0.93791 0.99953 0.87107 1.21016 0.98624 0.94882 0.97731 1.21586 0.96019 0.99978 0.98260 1.21635 0.97771 0.95784 1.00527 1.20723 0.94148 0.96228 1.00169 0.92090 0.88172 0.88657 0.91538 0.91795 0.91535 0.92108 0.91648 0.91940 0.91010 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.72 13.67 55.48 0.76 -24.97 16 2 C 0.04 1.22 5.49 -17.53 -0.10 1.13 16 3 Si 0.94 21.74 29.55 -169.99 -5.02 16.72 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.38 -11.68 9.65 30.92 0.30 -11.38 16 8 H 0.09 2.85 6.86 -52.48 -0.36 2.49 16 9 O -0.21 -6.13 9.41 -20.71 -0.19 -6.32 16 10 C 0.43 11.18 7.32 36.00 0.26 11.44 16 11 O -0.56 -15.73 15.30 -19.05 -0.29 -16.02 16 12 C -0.10 -1.98 2.56 -156.97 -0.40 -2.38 16 13 C -0.16 -2.61 9.22 -27.92 -0.26 -2.86 16 14 C -0.12 -2.06 5.49 -92.16 -0.51 -2.57 16 15 H 0.11 2.02 7.50 -51.93 -0.39 1.63 16 16 C -0.09 -1.08 5.86 -27.03 -0.16 -1.24 16 17 C -0.12 -1.50 5.94 -26.64 -0.16 -1.66 16 18 C -0.12 -1.58 5.71 -26.64 -0.15 -1.74 16 19 C -0.08 -1.33 5.22 -27.27 -0.14 -1.47 16 20 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 21 H 0.10 1.39 7.28 -51.93 -0.38 1.01 16 22 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.71 8.06 -51.93 -0.42 0.29 16 25 H 0.07 0.90 8.04 -51.93 -0.42 0.48 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.76 7.12 -51.92 -0.37 0.39 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 253.71 15.07 3.82 3.82 Total: -1.00 -32.99 253.71 -6.24 -39.24 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -4.00 Total: 0.26 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -1.31 Total: -12.73 kcal Atomic # 7 Polarization: -25.72 SS G_CDS: 0.76 Total: -24.97 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.49 Total: -22.34 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -32.99 -6.24 -39.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869706236.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.225 kcal (2) G-P(sol) polarization free energy of solvation -32.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds