Wall clock time and date at job start Sun Mar 29 2020 21:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86801 * 120.00076 * 2 1 4 4 H 1.48493 * 109.47079 * 239.99791 * 3 2 1 5 5 H 1.48500 * 109.46664 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47336 * 119.99494 * 3 2 1 7 7 C 1.38755 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00068 * 180.02562 * 7 2 1 9 9 O 1.34922 * 120.00272 * 0.02562 * 7 2 1 10 10 C 1.34310 * 117.00349 * 179.97438 * 9 7 2 11 11 O 1.21213 * 119.99644 * 0.02562 * 10 9 7 12 12 C 1.50693 * 119.99805 * 180.27868 * 10 9 7 13 13 C 1.52300 * 115.91568 * 111.55618 * 12 10 9 14 14 C 1.51360 * 60.10367 * 106.18669 * 13 12 10 15 15 H 1.08998 * 115.85225 * 251.98704 * 14 13 12 16 16 C 1.52543 * 117.52964 * 111.34545 * 14 13 12 17 17 C 1.52870 * 110.48456 * 270.70908 * 16 14 13 18 18 C 1.53306 * 108.58154 * 53.45967 * 17 16 14 19 19 C 1.52075 * 114.63945 * 325.30420 * 12 10 9 20 20 H 0.96993 * 120.00374 * 0.02562 * 1 2 3 21 21 H 1.09007 * 117.54078 * 213.89801 * 13 12 10 22 22 H 1.09004 * 117.54192 * 359.14549 * 13 12 10 23 23 H 1.09004 * 110.04352 * 149.85068 * 16 14 13 24 24 H 1.08998 * 108.32990 * 30.47974 * 16 14 13 25 25 H 1.09000 * 109.62142 * 293.73597 * 17 16 14 26 26 H 1.08995 * 109.62207 * 173.18442 * 17 16 14 27 27 H 1.08994 * 109.62140 * 165.82517 * 18 17 16 28 28 H 1.09009 * 109.61258 * 45.28643 * 18 17 16 29 29 H 1.08998 * 109.26954 * 314.64222 * 19 12 10 30 30 H 1.09003 * 109.26124 * 74.10784 * 19 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.1022 1.6964 -1.2124 5 1 1.2834 2.7464 -0.0006 6 1 3.1021 1.6965 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0010 9 8 1.3337 -2.3701 0.0005 10 6 2.0652 -3.4966 0.0005 11 8 3.2756 -3.4330 0.0010 12 6 1.3810 -4.8392 -0.0058 13 6 1.5324 -5.6574 -1.2814 14 6 2.2975 -6.0523 -0.0365 15 1 3.3712 -5.8663 -0.0595 16 6 1.8937 -7.3494 0.6574 17 6 0.8020 -7.0840 1.6941 18 6 -0.3503 -6.3390 1.0103 19 6 0.0774 -4.8902 0.7756 20 1 -0.4850 0.8400 -0.0004 21 1 0.6930 -6.2853 -1.5801 22 1 2.1051 -5.2170 -2.0977 23 1 2.7584 -7.7948 1.1494 24 1 1.5153 -8.0386 -0.0974 25 1 1.2048 -6.4727 2.5016 26 1 0.4392 -8.0308 2.0941 27 1 -1.2318 -6.3611 1.6510 28 1 -0.5768 -6.8130 0.0552 29 1 0.2147 -4.3955 1.7370 30 1 -0.6996 -4.3725 0.2130 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869706236.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:12 Heat of formation + Delta-G solvation = -94.846279 kcal Electronic energy + Delta-G solvation = -14051.807608 eV Core-core repulsion = 11618.567472 eV Total energy + Delta-G solvation = -2433.240136 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.75211 -39.86494 -37.19586 -34.35507 -34.05369 -31.88111 -27.91474 -25.86987 -24.85510 -22.32484 -21.85738 -19.91633 -19.46481 -18.56777 -17.22469 -16.59293 -16.27603 -15.54571 -15.06941 -14.86938 -14.79322 -14.28579 -13.80760 -13.44684 -13.27014 -12.92464 -12.82876 -12.43004 -12.19781 -12.07246 -11.92317 -11.75004 -11.40501 -11.03377 -10.82101 -10.74188 -10.63151 -8.57925 -6.38761 1.23726 1.29957 1.46503 1.54528 2.07042 2.60664 2.77366 2.97666 3.54831 3.73048 3.89219 4.10009 4.17579 4.34154 4.44319 4.59038 4.65982 4.71520 4.80275 4.99775 5.05626 5.11618 5.14583 5.26014 5.32151 5.34798 5.41941 5.53342 5.78621 6.59551 6.86110 7.73736 8.62585 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.056291 B = 0.008239 C = 0.007665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.299002 B = 3397.685825 C = 3652.231829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.002 4.002 3 Si 1.018 2.982 4 H -0.262 1.262 5 H -0.255 1.255 6 H -0.262 1.262 7 C -0.429 4.429 8 H 0.077 0.923 9 O -0.235 6.235 10 C 0.420 3.580 11 O -0.589 6.589 12 C -0.132 4.132 13 C -0.138 4.138 14 C -0.108 4.108 15 H 0.087 0.913 16 C -0.081 4.081 17 C -0.120 4.120 18 C -0.110 4.110 19 C -0.070 4.070 20 H 0.280 0.720 21 H 0.141 0.859 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.095 0.905 25 H 0.046 0.954 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.044 0.956 30 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.559 -12.804 0.880 12.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.203 4.203 3 Si 0.836 3.164 4 H -0.186 1.186 5 H -0.179 1.179 6 H -0.187 1.187 7 C -0.505 4.505 8 H 0.095 0.905 9 O -0.143 6.143 10 C 0.268 3.732 11 O -0.488 6.488 12 C -0.134 4.134 13 C -0.175 4.175 14 C -0.126 4.126 15 H 0.106 0.894 16 C -0.118 4.118 17 C -0.157 4.157 18 C -0.147 4.147 19 C -0.108 4.108 20 H 0.089 0.911 21 H 0.159 0.841 22 H 0.099 0.901 23 H 0.100 0.900 24 H 0.113 0.887 25 H 0.065 0.935 26 H 0.115 0.885 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.457 -12.627 0.875 12.741 hybrid contribution 0.677 1.375 -0.060 1.534 sum -0.781 -11.252 0.815 11.308 Atomic orbital electron populations 1.70067 1.07613 1.29538 1.46416 1.26564 0.96943 1.02286 0.94471 0.84692 0.77669 0.74232 0.79765 1.18616 1.17900 1.18657 1.21413 0.92100 0.81444 1.55525 0.90481 1.83897 1.40044 1.13951 1.76373 1.23601 0.86051 0.87641 0.75859 1.90477 1.17213 1.88573 1.52561 1.20541 1.00116 0.85909 1.06792 1.22993 1.03593 1.00778 0.90130 1.22014 0.96924 0.93851 0.99839 0.89433 1.21115 0.99596 0.92619 0.98440 1.21610 0.95398 1.01164 0.97521 1.21633 0.98712 0.92164 1.02213 1.20690 0.92523 0.99553 0.98046 0.91051 0.84125 0.90083 0.90047 0.88677 0.93469 0.88500 0.89858 0.89787 0.93681 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.61 13.67 21.62 0.30 -54.31 16 2 C 0.00 -0.12 5.49 84.87 0.47 0.34 16 3 Si 1.02 44.82 29.55 68.60 2.03 46.85 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 6 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 7 C -0.43 -27.46 9.65 67.94 0.66 -26.80 16 8 H 0.08 5.02 6.86 -2.91 -0.02 5.00 16 9 O -0.24 -14.75 9.41 14.85 0.14 -14.61 16 10 C 0.42 23.11 7.32 71.23 0.52 23.64 16 11 O -0.59 -35.11 15.30 20.77 0.32 -34.79 16 12 C -0.13 -5.32 2.56 -53.77 -0.14 -5.46 16 13 C -0.14 -4.40 9.22 29.83 0.27 -4.12 16 14 C -0.11 -3.46 5.49 -11.79 -0.06 -3.52 16 15 H 0.09 3.22 7.50 -2.39 -0.02 3.20 16 16 C -0.08 -1.74 5.86 30.40 0.18 -1.56 16 17 C -0.12 -2.53 5.94 30.65 0.18 -2.35 16 18 C -0.11 -2.57 5.71 30.65 0.17 -2.40 16 19 C -0.07 -2.50 5.22 30.25 0.16 -2.35 16 20 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 21 H 0.14 3.33 7.28 -2.38 -0.02 3.31 16 22 H 0.08 2.81 8.14 -2.38 -0.02 2.79 16 23 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 24 H 0.09 1.56 8.06 -2.39 -0.02 1.54 16 25 H 0.05 1.19 8.04 -2.39 -0.02 1.17 16 26 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.08 1.64 7.12 -2.38 -0.02 1.63 16 29 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -76.24 253.71 6.31 -69.93 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 1.12 Total: 11.53 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: 2.41 Total: -24.59 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 0.30 Total: -54.31 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: 0.46 Total: -49.40 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -76.24 6.31 -69.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869706236.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.921 kcal (2) G-P(sol) polarization free energy of solvation -76.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds