Wall clock time and date at job start Sun Mar 29 2020 21:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 115.56310 * 2 1 4 4 C 1.53079 * 117.51500 * 214.29538 * 2 1 3 5 5 C 1.52994 * 59.98277 * 252.52350 * 4 2 1 6 6 H 1.09005 * 117.50088 * 252.49419 * 5 4 2 7 7 C 1.53003 * 117.49888 * 107.50232 * 5 4 2 8 8 H 1.09003 * 115.54814 * 273.84612 * 7 5 4 9 9 C 1.53000 * 117.50178 * 59.50928 * 7 5 4 10 10 C 1.53004 * 117.50143 * 128.17470 * 7 5 4 11 11 H 1.08998 * 117.50141 * 145.00003 * 10 7 5 12 12 C 1.50693 * 117.49697 * 359.97282 * 10 7 5 13 13 O 1.21213 * 120.00261 * 264.16451 * 12 10 7 14 14 O 1.34317 * 119.99788 * 84.16924 * 12 10 7 15 15 C 1.34924 * 116.99856 * 179.97438 * 14 12 10 16 16 H 1.07997 * 119.99850 * 0.02562 * 15 14 12 17 17 C 1.38753 * 119.99690 * 179.97438 * 15 14 12 18 18 N 1.31441 * 120.00168 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99802 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47164 * 59.99869 * 19 17 15 21 21 H 1.48493 * 109.46988 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46884 * 299.99891 * 19 17 15 23 23 H 1.08996 * 109.47258 * 279.32183 * 1 2 3 24 24 H 1.09005 * 109.47127 * 39.32442 * 1 2 3 25 25 H 1.09000 * 109.47354 * 159.31636 * 1 2 3 26 26 H 1.09001 * 117.49257 * 145.03897 * 4 2 1 27 27 H 1.08996 * 117.50766 * 0.02562 * 4 2 1 28 28 H 1.08998 * 117.50242 * 215.00278 * 9 7 5 29 29 H 1.09000 * 117.49299 * 0.02562 * 9 7 5 30 30 H 0.96999 * 119.99736 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2371 -1.1216 -0.7650 5 6 2.2364 -1.1210 0.7650 6 1 3.1713 -0.8751 1.2687 7 6 1.3587 -2.1562 1.4714 8 1 0.3208 -1.8632 1.6293 9 6 1.6405 -3.6330 1.1876 10 6 2.0175 -3.0280 2.5424 11 1 1.4130 -3.3087 3.4048 12 6 3.4812 -2.8018 2.8202 13 8 4.3152 -3.4947 2.2782 14 8 3.8618 -1.8325 3.6685 15 6 5.1870 -1.6833 3.8733 16 1 5.8880 -2.3282 3.3643 17 6 5.6492 -0.7006 4.7370 18 7 4.7960 0.0846 5.3560 19 14 7.4840 -0.4936 5.0200 20 1 8.1516 -0.1811 3.7309 21 1 7.7147 0.6162 5.9793 22 1 8.0442 -1.7518 5.5754 23 1 -0.3633 0.1665 1.0140 24 1 -0.3634 0.7950 -0.6513 25 1 -0.3634 -0.9614 -0.3630 26 1 3.1724 -0.8757 -1.2679 27 1 1.6123 -1.8592 -1.2686 28 1 0.7880 -4.3116 1.1589 29 1 2.4515 -3.8670 0.4979 30 1 5.1191 0.7713 5.9601 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869886011.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:02 Heat of formation + Delta-G solvation = -39.446681 kcal Electronic energy + Delta-G solvation = -13797.290440 eV Core-core repulsion = 11366.452610 eV Total energy + Delta-G solvation = -2430.837829 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.46293 -37.94246 -35.58452 -34.41153 -32.07986 -28.32983 -25.92277 -23.89938 -23.38774 -20.76006 -19.84002 -18.57910 -17.62868 -16.35040 -15.96878 -15.00513 -14.36912 -14.29732 -13.88709 -13.43264 -12.89171 -12.48197 -12.24722 -11.79719 -11.40822 -11.25132 -11.18595 -10.81152 -10.63600 -10.48695 -10.37409 -10.21840 -9.72479 -9.40632 -9.23594 -8.91877 -8.53255 -6.36608 -4.04523 3.14280 3.20368 3.24464 3.47299 3.88697 3.96308 4.27134 4.61655 4.87621 4.98148 5.16104 5.22788 5.30525 5.46085 5.55884 5.62677 5.82911 5.95514 5.97151 5.99973 6.09324 6.17814 6.32598 6.46467 6.51623 6.69505 6.90537 7.43485 7.99997 8.77383 9.12056 9.94195 10.81321 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.035523 B = 0.008769 C = 0.007961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.042497 B = 3192.440484 C = 3516.381832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.152 4.152 3 H 0.102 0.898 4 C -0.173 4.173 5 C -0.119 4.119 6 H 0.114 0.886 7 C -0.101 4.101 8 H 0.112 0.888 9 C -0.149 4.149 10 C -0.139 4.139 11 H 0.125 0.875 12 C 0.429 3.571 13 O -0.555 6.555 14 O -0.209 6.209 15 C -0.384 4.384 16 H 0.093 0.907 17 C 0.043 3.957 18 N -0.864 5.864 19 Si 0.942 3.058 20 H -0.270 1.270 21 H -0.279 1.279 22 H -0.270 1.270 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.678 -0.643 -7.887 11.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.170 4.170 3 H 0.120 0.880 4 C -0.210 4.210 5 C -0.137 4.137 6 H 0.132 0.868 7 C -0.119 4.119 8 H 0.130 0.870 9 C -0.186 4.186 10 C -0.158 4.158 11 H 0.143 0.857 12 C 0.275 3.725 13 O -0.452 6.452 14 O -0.116 6.116 15 C -0.460 4.460 16 H 0.111 0.889 17 C -0.161 4.161 18 N -0.501 5.501 19 Si 0.766 3.234 20 H -0.195 1.195 21 H -0.204 1.204 22 H -0.195 1.195 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.109 0.891 27 H 0.111 0.889 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.453 -0.619 -7.854 10.845 hybrid contribution 0.938 0.109 0.317 0.996 sum -6.516 -0.510 -7.536 9.975 Atomic orbital electron populations 1.21319 0.93185 1.01435 1.01696 1.22338 0.95126 0.94535 1.05028 0.88003 1.23074 1.02217 1.01327 0.94368 1.21877 1.00674 0.98044 0.93066 0.86844 1.21769 0.98852 0.91066 1.00250 0.87001 1.23043 1.02936 0.95081 0.97543 1.21670 0.92989 1.06471 0.94642 0.85740 1.22094 0.89462 0.80803 0.80097 1.90544 1.53811 1.48664 1.52182 1.83901 1.27943 1.46251 1.53500 1.21172 0.79201 1.18329 1.27307 0.88889 1.25309 1.00299 0.95064 0.95458 1.69993 1.34487 1.18697 1.26941 0.85778 0.80799 0.78249 0.78545 1.19539 1.20379 1.19506 0.92077 0.92610 0.92580 0.89143 0.88903 0.88326 0.87851 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 8.77 37.15 0.33 -1.08 16 2 C -0.15 -2.20 6.41 -90.58 -0.58 -2.78 16 3 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 4 C -0.17 -2.52 9.82 -26.69 -0.26 -2.79 16 5 C -0.12 -2.10 5.46 -90.62 -0.49 -2.59 16 6 H 0.11 2.51 6.99 -51.93 -0.36 2.14 16 7 C -0.10 -1.67 5.39 -90.62 -0.49 -2.15 16 8 H 0.11 1.57 6.81 -51.93 -0.35 1.21 16 9 C -0.15 -2.36 9.69 -26.69 -0.26 -2.62 16 10 C -0.14 -2.69 6.29 -91.73 -0.58 -3.27 16 11 H 0.12 2.15 8.14 -51.93 -0.42 1.73 16 12 C 0.43 11.02 5.99 36.00 0.22 11.23 16 13 O -0.55 -15.49 15.84 -19.05 -0.30 -15.79 16 14 O -0.21 -6.15 9.71 -20.73 -0.20 -6.35 16 15 C -0.38 -11.60 9.65 30.92 0.30 -11.30 16 16 H 0.09 2.83 6.86 -52.49 -0.36 2.47 16 17 C 0.04 1.22 5.49 -17.53 -0.10 1.13 16 18 N -0.86 -25.70 13.67 55.48 0.76 -24.94 16 19 Si 0.94 21.68 29.55 -169.99 -5.02 16.66 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H 0.06 0.72 7.91 -51.93 -0.41 0.31 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.61 7.76 -51.93 -0.40 0.21 16 26 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.09 1.21 8.08 -51.93 -0.42 0.79 16 28 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.10 1.79 7.93 -51.93 -0.41 1.38 16 30 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 264.40 15.07 3.98 3.98 Total: -1.00 -32.98 264.40 -6.67 -39.65 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -3.97 Total: 3.01 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -1.92 Total: -16.22 kcal Atomic # 7 Polarization: -25.70 SS G_CDS: 0.76 Total: -24.94 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.50 Total: -22.14 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.98 -6.67 -39.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869886011.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.203 kcal (2) G-P(sol) polarization free energy of solvation -32.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds