Wall clock time and date at job start Sun Mar 29 2020 21:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 115.56310 * 2 1 4 4 C 1.53079 * 117.51500 * 214.29538 * 2 1 3 5 5 C 1.52994 * 59.98277 * 252.52350 * 4 2 1 6 6 H 1.09005 * 117.50088 * 252.49419 * 5 4 2 7 7 C 1.53003 * 117.49888 * 107.50232 * 5 4 2 8 8 H 1.09003 * 115.54814 * 273.84612 * 7 5 4 9 9 C 1.53000 * 117.50178 * 59.50928 * 7 5 4 10 10 C 1.53004 * 117.50143 * 128.17470 * 7 5 4 11 11 H 1.08998 * 117.50141 * 145.00003 * 10 7 5 12 12 C 1.50693 * 117.49697 * 359.97282 * 10 7 5 13 13 O 1.21213 * 120.00261 * 264.16451 * 12 10 7 14 14 O 1.34317 * 119.99788 * 84.16924 * 12 10 7 15 15 C 1.34924 * 116.99856 * 179.97438 * 14 12 10 16 16 H 1.07997 * 119.99850 * 0.02562 * 15 14 12 17 17 C 1.38753 * 119.99690 * 179.97438 * 15 14 12 18 18 N 1.31441 * 120.00168 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99802 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47164 * 59.99869 * 19 17 15 21 21 H 1.48493 * 109.46988 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46884 * 299.99891 * 19 17 15 23 23 H 1.08996 * 109.47258 * 279.32183 * 1 2 3 24 24 H 1.09005 * 109.47127 * 39.32442 * 1 2 3 25 25 H 1.09000 * 109.47354 * 159.31636 * 1 2 3 26 26 H 1.09001 * 117.49257 * 145.03897 * 4 2 1 27 27 H 1.08996 * 117.50766 * 0.02562 * 4 2 1 28 28 H 1.08998 * 117.50242 * 215.00278 * 9 7 5 29 29 H 1.09000 * 117.49299 * 0.02562 * 9 7 5 30 30 H 0.96999 * 119.99736 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2371 -1.1216 -0.7650 5 6 2.2364 -1.1210 0.7650 6 1 3.1713 -0.8751 1.2687 7 6 1.3587 -2.1562 1.4714 8 1 0.3208 -1.8632 1.6293 9 6 1.6405 -3.6330 1.1876 10 6 2.0175 -3.0280 2.5424 11 1 1.4130 -3.3087 3.4048 12 6 3.4812 -2.8018 2.8202 13 8 4.3152 -3.4947 2.2782 14 8 3.8618 -1.8325 3.6685 15 6 5.1870 -1.6833 3.8733 16 1 5.8880 -2.3282 3.3643 17 6 5.6492 -0.7006 4.7370 18 7 4.7960 0.0846 5.3560 19 14 7.4840 -0.4936 5.0200 20 1 8.1516 -0.1811 3.7309 21 1 7.7147 0.6162 5.9793 22 1 8.0442 -1.7518 5.5754 23 1 -0.3633 0.1665 1.0140 24 1 -0.3634 0.7950 -0.6513 25 1 -0.3634 -0.9614 -0.3630 26 1 3.1724 -0.8757 -1.2679 27 1 1.6123 -1.8592 -1.2686 28 1 0.7880 -4.3116 1.1589 29 1 2.4515 -3.8670 0.4979 30 1 5.1191 0.7713 5.9601 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869886011.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:01 Heat of formation + Delta-G solvation = -59.353271 kcal Electronic energy + Delta-G solvation = -13798.153654 eV Core-core repulsion = 11366.452610 eV Total energy + Delta-G solvation = -2431.701044 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.30806 -39.50102 -37.41384 -36.10718 -34.31334 -29.33073 -28.04528 -25.54211 -24.89148 -21.91941 -21.50892 -20.20876 -19.83335 -18.19824 -17.43812 -16.83198 -16.26065 -15.99691 -15.59372 -14.93843 -14.22492 -13.87452 -13.65468 -13.38034 -13.12437 -13.03332 -12.42610 -12.36107 -12.23916 -12.10273 -12.00533 -11.92312 -11.50950 -11.00410 -10.72513 -10.67537 -10.47529 -8.56341 -6.36813 1.27534 1.29797 1.46156 1.59364 2.07672 2.54320 2.72485 2.93005 3.07433 3.54201 3.79671 3.90442 4.06486 4.12355 4.32406 4.46736 4.57642 4.69346 4.84768 4.89062 4.95719 5.00101 5.04493 5.16601 5.20996 5.22483 5.33484 5.47172 5.80598 6.64333 6.88078 7.77717 8.64250 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.035523 B = 0.008769 C = 0.007961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.042497 B = 3192.440484 C = 3516.381832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.137 4.137 3 H 0.095 0.905 4 C -0.158 4.158 5 C -0.160 4.160 6 H 0.053 0.947 7 C -0.082 4.082 8 H 0.148 0.852 9 C -0.121 4.121 10 C -0.175 4.175 11 H 0.148 0.852 12 C 0.428 3.572 13 O -0.587 6.587 14 O -0.240 6.240 15 C -0.426 4.426 16 H 0.077 0.923 17 C -0.003 4.003 18 N -0.900 5.900 19 Si 1.016 2.984 20 H -0.263 1.263 21 H -0.256 1.256 22 H -0.261 1.261 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.119 0.881 28 H 0.147 0.853 29 H 0.084 0.916 30 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.090 -0.672 -8.777 12.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.156 4.156 3 H 0.113 0.887 4 C -0.195 4.195 5 C -0.179 4.179 6 H 0.072 0.928 7 C -0.100 4.100 8 H 0.165 0.835 9 C -0.158 4.158 10 C -0.194 4.194 11 H 0.166 0.834 12 C 0.276 3.724 13 O -0.485 6.485 14 O -0.148 6.148 15 C -0.501 4.501 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.538 5.538 19 Si 0.834 3.166 20 H -0.188 1.188 21 H -0.180 1.180 22 H -0.185 1.185 23 H 0.080 0.920 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.103 0.897 27 H 0.137 0.863 28 H 0.165 0.835 29 H 0.103 0.897 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.890 -0.652 -8.751 12.491 hybrid contribution 1.350 0.108 0.532 1.455 sum -7.540 -0.544 -8.219 11.167 Atomic orbital electron populations 1.21361 0.90322 1.03241 1.02389 1.22493 0.97182 0.93472 1.02403 0.88723 1.23170 1.02525 1.01829 0.91977 1.21743 0.99688 1.01401 0.95020 0.92846 1.21942 0.99543 0.91061 0.97431 0.83469 1.23218 1.03417 0.95559 0.93588 1.21861 0.89037 1.10975 0.97535 0.83427 1.23388 0.92166 0.78816 0.77986 1.90491 1.55739 1.49414 1.52897 1.83920 1.27661 1.48033 1.55150 1.21367 0.79752 1.19842 1.29172 0.90515 1.26535 1.05983 0.93715 0.94104 1.70077 1.37163 1.19186 1.27329 0.84727 0.73636 0.79123 0.79111 1.18752 1.18003 1.18528 0.92011 0.90631 0.90883 0.89700 0.86293 0.83475 0.89713 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 8.77 71.98 0.63 -1.68 16 2 C -0.14 -3.78 6.41 -10.77 -0.07 -3.85 16 3 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 4 C -0.16 -4.42 9.82 30.62 0.30 -4.12 16 5 C -0.16 -5.71 5.46 -10.80 -0.06 -5.77 16 6 H 0.05 2.55 6.99 -2.38 -0.02 2.54 16 7 C -0.08 -2.55 5.39 -10.79 -0.06 -2.61 16 8 H 0.15 3.53 6.81 -2.39 -0.02 3.52 16 9 C -0.12 -3.54 9.69 30.62 0.30 -3.24 16 10 C -0.18 -6.75 6.29 -11.51 -0.07 -6.82 16 11 H 0.15 4.92 8.14 -2.39 -0.02 4.90 16 12 C 0.43 23.02 5.99 71.23 0.43 23.45 16 13 O -0.59 -34.44 15.84 20.76 0.33 -34.11 16 14 O -0.24 -14.93 9.71 14.77 0.14 -14.79 16 15 C -0.43 -27.10 9.65 67.94 0.66 -26.45 16 16 H 0.08 4.97 6.86 -2.91 -0.02 4.95 16 17 C 0.00 -0.18 5.49 84.87 0.47 0.29 16 18 N -0.90 -54.85 13.67 21.62 0.30 -54.55 16 19 Si 1.02 44.93 29.55 68.60 2.03 46.96 16 20 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 22 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 23 H 0.06 1.25 7.91 -2.39 -0.02 1.23 16 24 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.07 1.23 7.76 -2.39 -0.02 1.21 16 26 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.12 2.70 8.08 -2.39 -0.02 2.68 16 28 H 0.15 2.90 8.14 -2.39 -0.02 2.88 16 29 H 0.08 2.83 7.93 -2.39 -0.02 2.81 16 30 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -76.66 264.40 6.44 -70.22 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 1.12 Total: 17.07 kcal Atomic # 6 Polarization: -33.32 SS G_CDS: 2.52 Total: -30.80 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.30 Total: -54.55 kcal Atomic # 8 Polarization: -49.37 SS G_CDS: 0.47 Total: -48.89 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -76.66 6.44 -70.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869886011.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.867 kcal (2) G-P(sol) polarization free energy of solvation -76.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds